RNA–Protein interactions for RNA: ENST00000560328.1

NEO1-208, Transcript of neogenin 1, human

TSL 1 (best)

Gene NEO1, Length 5,895 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEO1-208	ENST00000560328	DCAF8L2	P0C7V8	631 aa		16.61	■□□□□ 0.25
NEO1-208	ENST00000560328	NISCH	Q9Y2I1	1504 aa		16.5	■□□□□ 0.23
NEO1-208	ENST00000560328	SUPT5H	O00267	1087 aa	Known RBP	15.75	■□□□□ 0.11
NEO1-208	ENST00000560328	SHROOM4	Q9ULL8	1493 aa		15.63	■□□□□ 0.09
NEO1-208	ENST00000560328	EHMT2	Q96KQ7	1210 aa		15.11	■□□□□ 0.01
NEO1-208	ENST00000560328	FAM9A	Q8IZU1	332 aa	Predicted RBP	14.81	□□□□□ -0.04
NEO1-208	ENST00000560328	APLP2	Q06481	763 aa		14.73	□□□□□ -0.05
NEO1-208	ENST00000560328	TRIM41	Q8WV44	630 aa		14.62	□□□□□ -0.07
NEO1-208	ENST00000560328	TTBK1	Q5TCY1	1321 aa	Predicted RBP	14.56	□□□□□ -0.08
NEO1-208	ENST00000560328	PCGF6	Q9BYE7	350 aa		14.52	□□□□□ -0.08
NEO1-208	ENST00000560328	RANGAP1	P46060	587 aa	Predicted RBP	14.5	□□□□□ -0.09
NEO1-208	ENST00000560328	UBTF	P17480	764 aa	Known RBP	14.38	□□□□□ -0.11
NEO1-208	ENST00000560328	ATP1B4	Q9UN42	357 aa	Predicted RBP	14.32	□□□□□ -0.12
NEO1-208	ENST00000560328	CCER1	Q8TC90	406 aa	Predicted RBP	14.22	□□□□□ -0.13
NEO1-208	ENST00000560328	ZEB1	P37275	1124 aa	Predicted RBP	14.18	□□□□□ -0.14
NEO1-208	ENST00000560328	PELP1	Q8IZL8	1130 aa	Known RBP	14.17	□□□□□ -0.14
NEO1-208	ENST00000560328	ABCC9	O60706	1549 aa		14.16	□□□□□ -0.14
NEO1-208	ENST00000560328	PPARGC1B	Q86YN6	1023 aa	Known RBP	14.13	□□□□□ -0.15
NEO1-208	ENST00000560328	CHIC1	Q5VXU3	224 aa		14.12	□□□□□ -0.15
NEO1-208	ENST00000560328	LOC105371045	A0A1W2PR82	267 aa		14.06	□□□□□ -0.16
NEO1-208	ENST00000560328	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.03	□□□□□ -0.16
NEO1-208	ENST00000560328	TRIM26	Q12899	539 aa	Predicted RBP	14	□□□□□ -0.17
NEO1-208	ENST00000560328	CENPB	P07199	599 aa	Predicted RBP	13.93	□□□□□ -0.18
NEO1-208	ENST00000560328	ITGAE	P38570	1179 aa		13.86	□□□□□ -0.19
NEO1-208	ENST00000560328	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.85	□□□□□ -0.19
NEO1-208	ENST00000560328	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.85	□□□□□ -0.19
NEO1-208	ENST00000560328	YTHDC1	Q96MU7	727 aa	Known RBP	13.76	□□□□□ -0.21
NEO1-208	ENST00000560328	HRC	P23327	699 aa		13.76	□□□□□ -0.21
NEO1-208	ENST00000560328	MYT1L	Q9UL68	1186 aa		13.7	□□□□□ -0.22
NEO1-208	ENST00000560328	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.67	□□□□□ -0.22
NEO1-208	ENST00000560328	NEFL	P07196	543 aa		13.63	□□□□□ -0.23
NEO1-208	ENST00000560328	SCRIB	Q14160	1630 aa		13.61	□□□□□ -0.23
NEO1-208	ENST00000560328	CCDC180	Q9P1Z9	1646 aa		13.57	□□□□□ -0.24
NEO1-208	ENST00000560328	POLR3GL	Q9BT43	218 aa		13.57	□□□□□ -0.24
NEO1-208	ENST00000560328	FAM50A	Q14320	339 aa	Known RBP	13.56	□□□□□ -0.24
NEO1-208	ENST00000560328	ERICH6	Q7L0X2	663 aa		13.55	□□□□□ -0.24
NEO1-208	ENST00000560328	CSRNP3	Q8WYN3	585 aa		13.48	□□□□□ -0.25
NEO1-208	ENST00000560328	FBLN2	P98095	1184 aa		13.47	□□□□□ -0.25
NEO1-208	ENST00000560328	CNGB1	Q14028	1251 aa	Predicted RBP	13.44	□□□□□ -0.26
NEO1-208	ENST00000560328	TRIM52	Q96A61	297 aa		13.43	□□□□□ -0.26
NEO1-208	ENST00000560328	P3H3	Q8IVL6	736 aa		13.4	□□□□□ -0.26
NEO1-208	ENST00000560328	NEUROD1	Q13562	356 aa		13.38	□□□□□ -0.27
NEO1-208	ENST00000560328	DIEXF	Q68CQ4	756 aa	Known RBP	13.38	□□□□□ -0.27
NEO1-208	ENST00000560328	ARID3C	A6NKF2	412 aa		13.31	□□□□□ -0.28
NEO1-208	ENST00000560328	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.3	□□□□□ -0.28
NEO1-208	ENST00000560328	RB1CC1	Q8TDY2	1594 aa		13.29	□□□□□ -0.28
NEO1-208	ENST00000560328	ZNF326	Q5BKZ1	582 aa	Known RBP	13.23	□□□□□ -0.29
NEO1-208	ENST00000560328	RSF1	Q96T23	1441 aa	Predicted RBP	13.2	□□□□□ -0.3
NEO1-208	ENST00000560328	NACAD	O15069	1562 aa		13.19	□□□□□ -0.3
NEO1-208	ENST00000560328	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.18	□□□□□ -0.3
NEO1-208	ENST00000560328	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.17	□□□□□ -0.3
NEO1-208	ENST00000560328	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.15	□□□□□ -0.3
NEO1-208	ENST00000560328	ANP32C	O43423	234 aa		13.13	□□□□□ -0.31
NEO1-208	ENST00000560328	DCAF1	Q9Y4B6	1507 aa		13.12	□□□□□ -0.31
NEO1-208	ENST00000560328	DAXX	Q9UER7	740 aa	Predicted RBP	13.12	□□□□□ -0.31
NEO1-208	ENST00000560328	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.03	□□□□□ -0.32
NEO1-208	ENST00000560328	CLIP1	P30622	1438 aa		13	□□□□□ -0.33
NEO1-208	ENST00000560328	MYO15B	Q96JP2	1530 aa		13	□□□□□ -0.33
NEO1-208	ENST00000560328	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.99	□□□□□ -0.33
NEO1-208	ENST00000560328	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.99	□□□□□ -0.33
NEO1-208	ENST00000560328	CHIC2	Q9UKJ5	165 aa		12.98	□□□□□ -0.33
NEO1-208	ENST00000560328	CLSPN	Q9HAW4	1339 aa		12.98	□□□□□ -0.33
NEO1-208	ENST00000560328	GTF3C3	Q9Y5Q9	886 aa		12.98	□□□□□ -0.33
NEO1-208	ENST00000560328	EEA1	Q15075	1411 aa		12.97	□□□□□ -0.33
NEO1-208	ENST00000560328	CECR2	Q9BXF3	1484 aa		12.97	□□□□□ -0.33
NEO1-208	ENST00000560328	TONSL	Q96HA7	1378 aa		12.97	□□□□□ -0.33
NEO1-208	ENST00000560328	BCAN	Q96GW7	911 aa		12.96	□□□□□ -0.33
NEO1-208	ENST00000560328	NPM1	P06748	294 aa	Known RBP eCLIP	12.96	□□□□□ -0.34
NEO1-208	ENST00000560328	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.95	□□□□□ -0.34
NEO1-208	ENST00000560328	MTUS2	Q5JR59	1369 aa		12.95	□□□□□ -0.34
NEO1-208	ENST00000560328	GOLGA3	Q08378	1498 aa		12.94	□□□□□ -0.34
NEO1-208	ENST00000560328	MYT1	Q01538	1121 aa		12.92	□□□□□ -0.34
NEO1-208	ENST00000560328	CEP162	Q5TB80	1403 aa		12.92	□□□□□ -0.34
NEO1-208	ENST00000560328	CHGA	P10645	457 aa	Known RBP	12.88	□□□□□ -0.35
NEO1-208	ENST00000560328	KIF27	Q86VH2	1401 aa		12.88	□□□□□ -0.35
NEO1-208	ENST00000560328	TSPY4	P0CV99	314 aa		12.88	□□□□□ -0.35
NEO1-208	ENST00000560328	TSPY10	P0CW01	314 aa		12.88	□□□□□ -0.35
NEO1-208	ENST00000560328	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.88	□□□□□ -0.35
NEO1-208	ENST00000560328	ESF1	Q9H501	851 aa	Known RBP	12.88	□□□□□ -0.35
NEO1-208	ENST00000560328	DDX10	Q13206	875 aa	Known RBP	12.84	□□□□□ -0.35
NEO1-208	ENST00000560328	ACIN1	Q9UKV3	1341 aa	Known RBP	12.84	□□□□□ -0.35
NEO1-208	ENST00000560328	TNIK	Q9UKE5	1360 aa		12.84	□□□□□ -0.35
NEO1-208	ENST00000560328	STAG3	Q9UJ98	1225 aa		12.83	□□□□□ -0.36
NEO1-208	ENST00000560328	CEP164	Q9UPV0	1460 aa		12.83	□□□□□ -0.36
NEO1-208	ENST00000560328	NEFM	P07197	916 aa		12.82	□□□□□ -0.36
NEO1-208	ENST00000560328	CANX	P27824	592 aa	Known RBP	12.81	□□□□□ -0.36
NEO1-208	ENST00000560328	RRP7BP	Q9NSQ0	103 aa		12.8	□□□□□ -0.36
NEO1-208	ENST00000560328	MROH2B	Q7Z745	1585 aa		12.8	□□□□□ -0.36
NEO1-208	ENST00000560328	PLEKHD1	A6NEE1	506 aa		12.78	□□□□□ -0.36
NEO1-208	ENST00000560328	SLC24A1	O60721	1099 aa		12.78	□□□□□ -0.36
NEO1-208	ENST00000560328	KCNH8	Q96L42	1107 aa		12.78	□□□□□ -0.36
NEO1-208	ENST00000560328	KDM2A	Q9Y2K7	1162 aa		12.78	□□□□□ -0.36
NEO1-208	ENST00000560328	RTL5	Q5HYW3	569 aa	Predicted RBP	12.77	□□□□□ -0.37
NEO1-208	ENST00000560328	PLPPR3	Q6T4P5	718 aa		12.77	□□□□□ -0.37
NEO1-208	ENST00000560328	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.76	□□□□□ -0.37
NEO1-208	ENST00000560328	CCDC88B	A6NC98	1476 aa		12.74	□□□□□ -0.37
NEO1-208	ENST00000560328	FAM9B	Q8IZU0	186 aa		12.74	□□□□□ -0.37
NEO1-208	ENST00000560328	SOGA1	O94964	1423 aa		12.74	□□□□□ -0.37
NEO1-208	ENST00000560328	ERCC6	Q03468	1493 aa		12.74	□□□□□ -0.37
NEO1-208	ENST00000560328	HNRNPU	Q00839	825 aa	Known RBP eCLIP	12.73	□□□□□ -0.37

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