RNA–Protein interactions for RNA: ENST00000557640.1

RD3L-201, Transcript of retinal degeneration 3 like, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RD3L, Length 1,201 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RD3L-201ENST00000557640 AEBP2Q6ZN18 517 aaPredicted RBP30.29■■■□□ 2.44
RD3L-201ENST00000557640 CHIC1Q5VXU3 224 aa28.36■■■□□ 2.13
RD3L-201ENST00000557640 SENP3Q9H4L4 574 aaPredicted RBP25.95■■□□□ 1.74
RD3L-201ENST00000557640 PHF23Q9BUL5 403 aaPredicted RBP25.57■■□□□ 1.68
RD3L-201ENST00000557640 FOXD1Q16676 465 aa24.23■■□□□ 1.47
RD3L-201ENST00000557640 POTEDQ86YR6 584 aa23.12■■□□□ 1.29
RD3L-201ENST00000557640 MSH5O43196 834 aa22.88■■□□□ 1.25
RD3L-201ENST00000557640 PIAS4Q8N2W9 510 aaPredicted RBP22.57■■□□□ 1.2
RD3L-201ENST00000557640 PLPPR3Q6T4P5 718 aa22.45■■□□□ 1.18
RD3L-201ENST00000557640 PPP6R1Q9UPN7 881 aa22.3■■□□□ 1.16
RD3L-201ENST00000557640 ADRA2BP18089 450 aa22.24■■□□□ 1.15
RD3L-201ENST00000557640 NISCHQ9Y2I1 1504 aa20.63■□□□□ 0.89
RD3L-201ENST00000557640 MAPK8IP2Q13387 824 aaPredicted RBP20.57■□□□□ 0.88
RD3L-201ENST00000557640 DMRT2Q9Y5R5 561 aa20.48■□□□□ 0.87
RD3L-201ENST00000557640 SCAF1Q9H7N4 1312 aaKnown RBP20.38■□□□□ 0.85
RD3L-201ENST00000557640 CACNB1Q02641 598 aaPredicted RBP19.98■□□□□ 0.79
RD3L-201ENST00000557640 DCAF8L1A6NGE4 600 aa19.81■□□□□ 0.76
RD3L-201ENST00000557640 PPP4R3CPQ6ZMV5 832 aa19.62■□□□□ 0.73
RD3L-201ENST00000557640 HOXD11P31277 338 aaPredicted RBP19.52■□□□□ 0.72
RD3L-201ENST00000557640 RNF39Q9H2S5 420 aa19.45■□□□□ 0.7
RD3L-201ENST00000557640 CNKSR2Q8WXI2 1034 aa19.35■□□□□ 0.69
RD3L-201ENST00000557640 RNF216Q9NWF9 866 aaPredicted RBP19.28■□□□□ 0.68
RD3L-201ENST00000557640 C1QBPQ07021 282 aaKnown RBP19.16■□□□□ 0.66
RD3L-201ENST00000557640 DNAJC5BQ9UF47 199 aa18.91■□□□□ 0.62
RD3L-201ENST00000557640 ABCC9O60706 1549 aa18.86■□□□□ 0.61
RD3L-201ENST00000557640 NCBP3Q53F19 620 aaKnown RBP18.76■□□□□ 0.59
RD3L-201ENST00000557640 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
RD3L-201ENST00000557640 CCDC180Q9P1Z9 1646 aa18.7■□□□□ 0.58
RD3L-201ENST00000557640 NPM3O75607 178 aaKnown RBP18.43■□□□□ 0.54
RD3L-201ENST00000557640 U3KPZ7 1027 aaPredicted RBP18.18■□□□□ 0.5
RD3L-201ENST00000557640 CAPN15O75808 1086 aa18.15■□□□□ 0.5
RD3L-201ENST00000557640 SPINK5Q9NQ38 1064 aaPredicted RBP18.09■□□□□ 0.49
RD3L-201ENST00000557640 DSG3P32926 999 aa18.07■□□□□ 0.48
RD3L-201ENST00000557640 POTEHQ6S545 545 aa18.05■□□□□ 0.48
RD3L-201ENST00000557640 RB1CC1Q8TDY2 1594 aa17.81■□□□□ 0.44
RD3L-201ENST00000557640 TRHP20396 242 aaPredicted RBP17.75■□□□□ 0.43
RD3L-201ENST00000557640 SLC4A2P04920 1241 aa17.7■□□□□ 0.42
RD3L-201ENST00000557640 APLP2Q06481 763 aa17.69■□□□□ 0.42
RD3L-201ENST00000557640 ABCB7O75027 752 aa17.67■□□□□ 0.42
RD3L-201ENST00000557640 KCNA4P22459 653 aa17.67■□□□□ 0.42
RD3L-201ENST00000557640 UNC13AQ9UPW8 1703 aa17.67■□□□□ 0.42
RD3L-201ENST00000557640 ZNF219Q9P2Y4 722 aaPredicted RBP17.64■□□□□ 0.41
RD3L-201ENST00000557640 NACADO15069 1562 aa17.62■□□□□ 0.41
RD3L-201ENST00000557640 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.55■□□□□ 0.4
RD3L-201ENST00000557640 HNRNPUL2Q1KMD3 747 aaKnown RBP17.55■□□□□ 0.4
RD3L-201ENST00000557640 BICRAQ9NZM4 1560 aa17.45■□□□□ 0.38
RD3L-201ENST00000557640 PABPN1Q86U42 306 aaKnown RBP eCLIP17.42■□□□□ 0.38
RD3L-201ENST00000557640 SAMD1Q6SPF0 538 aaPredicted RBP17.41■□□□□ 0.38
RD3L-201ENST00000557640 MYO15BQ96JP2 1530 aa17.28■□□□□ 0.36
RD3L-201ENST00000557640 RBM42Q9BTD8 480 aaKnown RBP17.28■□□□□ 0.36
RD3L-201ENST00000557640 DCAF8L2P0C7V8 631 aa17.25■□□□□ 0.35
RD3L-201ENST00000557640 POLA2Q14181 598 aa17.14■□□□□ 0.33
RD3L-201ENST00000557640 ZCCHC6Q5VYS8 1495 aaKnown RBP17.1■□□□□ 0.33
RD3L-201ENST00000557640 CHRDL2Q6WN34 429 aa17.09■□□□□ 0.33
RD3L-201ENST00000557640 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
RD3L-201ENST00000557640 MYCNP04198 464 aaPredicted RBP17.07■□□□□ 0.32
RD3L-201ENST00000557640 SCRIBQ14160 1630 aa17.03■□□□□ 0.32
RD3L-201ENST00000557640 SHROOM4Q9ULL8 1493 aa17.02■□□□□ 0.32
RD3L-201ENST00000557640 DCAF1Q9Y4B6 1507 aa17■□□□□ 0.31
RD3L-201ENST00000557640 CECR2Q9BXF3 1484 aa16.97■□□□□ 0.31
RD3L-201ENST00000557640 EIF4G1Q04637 1599 aaKnown RBP16.97■□□□□ 0.31
RD3L-201ENST00000557640 AKT1S1Q96B36 256 aa16.77■□□□□ 0.28
RD3L-201ENST00000557640 ZBTB12Q9Y330 459 aaPredicted RBP16.72■□□□□ 0.27
RD3L-201ENST00000557640 ATF5Q9Y2D1 282 aaPredicted RBP16.71■□□□□ 0.27
RD3L-201ENST00000557640 SP7Q8TDD2 431 aaPredicted RBP16.7■□□□□ 0.26
RD3L-201ENST00000557640 REM2Q8IYK8 340 aaPredicted RBP16.63■□□□□ 0.25
RD3L-201ENST00000557640 FOXD4L1Q9NU39 408 aa16.63■□□□□ 0.25
RD3L-201ENST00000557640 SLC4A1APQ9BWU0 796 aaKnown RBP16.62■□□□□ 0.25
RD3L-201ENST00000557640 OSCARQ8IYS5 282 aa16.58■□□□□ 0.24
RD3L-201ENST00000557640 PIP4P2Q8N4L2 257 aa16.57■□□□□ 0.24
RD3L-201ENST00000557640 HAX1O00165 279 aa16.48■□□□□ 0.23
RD3L-201ENST00000557640 DNAJC5Q9H3Z4 198 aa16.47■□□□□ 0.23
RD3L-201ENST00000557640 PITPNM1O00562 1244 aa16.44■□□□□ 0.22
RD3L-201ENST00000557640 FXR2P51116 673 aaKnown RBP eCLIP16.37■□□□□ 0.21
RD3L-201ENST00000557640 CUX2O14529 1486 aa16.3■□□□□ 0.2
RD3L-201ENST00000557640 NCAPD3P42695 1498 aa16.24■□□□□ 0.19
RD3L-201ENST00000557640 SMARCA4P51532 1647 aa16.21■□□□□ 0.19
RD3L-201ENST00000557640 ERCC6Q03468 1493 aa16.21■□□□□ 0.19
RD3L-201ENST00000557640 ATAD2BQ9ULI0 1458 aa16.2■□□□□ 0.18
RD3L-201ENST00000557640 ZBTB22O15209 634 aa16.19■□□□□ 0.18
RD3L-201ENST00000557640 NESP48681 1621 aa16.19■□□□□ 0.18
RD3L-201ENST00000557640 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
RD3L-201ENST00000557640 EVX2Q03828 476 aa16.16■□□□□ 0.18
RD3L-201ENST00000557640 SPDYE2BA6NHP3 402 aa16.15■□□□□ 0.18
RD3L-201ENST00000557640 SPDYE6P0CI01 402 aa16.15■□□□□ 0.18
RD3L-201ENST00000557640 ATXN8OSP0DMR3 200 aa16.15■□□□□ 0.18
RD3L-201ENST00000557640 FBLN2P98095 1184 aa16.15■□□□□ 0.18
RD3L-201ENST00000557640 SPDYE2Q495Y8 402 aa16.15■□□□□ 0.18
RD3L-201ENST00000557640 THOC2Q8NI27 1593 aaKnown RBP16.15■□□□□ 0.18
RD3L-201ENST00000557640 SMARCA2P51531 1590 aa16.13■□□□□ 0.17
RD3L-201ENST00000557640 CLEC11AQ9Y240 323 aa16.08■□□□□ 0.16
RD3L-201ENST00000557640 KIF21AQ7Z4S6 1674 aa16.06■□□□□ 0.16
RD3L-201ENST00000557640 PRKAR2AP13861 404 aaKnown RBP16.05■□□□□ 0.16
RD3L-201ENST00000557640 PEG3Q9GZU2 1588 aa16.04■□□□□ 0.16
RD3L-201ENST00000557640 SPDYE1Q8NFV5 336 aaPredicted RBP16.01■□□□□ 0.15
RD3L-201ENST00000557640 BAZ1BQ9UIG0 1483 aaKnown RBP16.01■□□□□ 0.15
RD3L-201ENST00000557640 BAZ1AQ9NRL2 1556 aaPredicted RBP16■□□□□ 0.15
RD3L-201ENST00000557640 LAMC3Q9Y6N6 1575 aa15.96■□□□□ 0.15
RD3L-201ENST00000557640 ZNF692Q9BU19 519 aaPredicted RBP15.95■□□□□ 0.14
RD3L-201ENST00000557640 MROH2BQ7Z745 1585 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 120.2 ms