RNA–Protein interactions for RNA: ENST00000557440.1

LINC00639-205, long intergenic non-protein coding RNA 639, humanhuman

TSL 2

Gene LINC00639, Length 3,644 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00639-205ENST00000557440 NISCHQ9Y2I1 1504 aa26.8■■□□□ 1.88
LINC00639-205ENST00000557440 DCAF8L2P0C7V8 631 aa24.52■■□□□ 1.52
LINC00639-205ENST00000557440 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
LINC00639-205ENST00000557440 SUPT5HO00267 1087 aaKnown RBP24.23■■□□□ 1.47
LINC00639-205ENST00000557440 EHMT2Q96KQ7 1210 aa23.01■■□□□ 1.27
LINC00639-205ENST00000557440 PCGF6Q9BYE7 350 aa22.74■■□□□ 1.23
LINC00639-205ENST00000557440 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
LINC00639-205ENST00000557440 FAM9AQ8IZU1 332 aaPredicted RBP22.65■■□□□ 1.22
LINC00639-205ENST00000557440 LOC105371045A0A1W2PR82 267 aa22.6■■□□□ 1.21
LINC00639-205ENST00000557440 ZCCHC6Q5VYS8 1495 aaKnown RBP22.47■■□□□ 1.19
LINC00639-205ENST00000557440 MYO15BQ96JP2 1530 aa22.24■■□□□ 1.15
LINC00639-205ENST00000557440 PPARGC1BQ86YN6 1023 aaKnown RBP22.23■■□□□ 1.15
LINC00639-205ENST00000557440 TRIM41Q8WV44 630 aa22.2■■□□□ 1.15
LINC00639-205ENST00000557440 TTBK1Q5TCY1 1321 aaPredicted RBP22.15■■□□□ 1.14
LINC00639-205ENST00000557440 HRCP23327 699 aa22.07■■□□□ 1.12
LINC00639-205ENST00000557440 ABCC9O60706 1549 aa22.03■■□□□ 1.12
LINC00639-205ENST00000557440 CCDC180Q9P1Z9 1646 aa22.03■■□□□ 1.12
LINC00639-205ENST00000557440 SCRIBQ14160 1630 aa21.78■■□□□ 1.08
LINC00639-205ENST00000557440 TRIM26Q12899 539 aaPredicted RBP21.71■■□□□ 1.07
LINC00639-205ENST00000557440 RANGAP1P46060 587 aaPredicted RBP21.69■■□□□ 1.06
LINC00639-205ENST00000557440 PABPN1Q86U42 306 aaKnown RBP eCLIP21.6■■□□□ 1.05
LINC00639-205ENST00000557440 RSF1Q96T23 1441 aaPredicted RBP21.5■■□□□ 1.03
LINC00639-205ENST00000557440 UBTFP17480 764 aaKnown RBP21.45■■□□□ 1.02
LINC00639-205ENST00000557440 CCER1Q8TC90 406 aaPredicted RBP21.4■■□□□ 1.02
LINC00639-205ENST00000557440 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.39■■□□□ 1.01
LINC00639-205ENST00000557440 CECR2Q9BXF3 1484 aa21.36■■□□□ 1.01
LINC00639-205ENST00000557440 DCAF1Q9Y4B6 1507 aa21.29■■□□□ 1
LINC00639-205ENST00000557440 RB1CC1Q8TDY2 1594 aa21.2■□□□□ 0.98
LINC00639-205ENST00000557440 ZEB1P37275 1124 aaPredicted RBP21.15■□□□□ 0.98
LINC00639-205ENST00000557440 HNRNPUL2Q1KMD3 747 aaKnown RBP21.06■□□□□ 0.96
LINC00639-205ENST00000557440 MROH2BQ7Z745 1585 aa21.06■□□□□ 0.96
LINC00639-205ENST00000557440 APLP2Q06481 763 aa21.04■□□□□ 0.96
LINC00639-205ENST00000557440 YTHDC1Q96MU7 727 aaKnown RBP20.92■□□□□ 0.94
LINC00639-205ENST00000557440 WIZO95785 1651 aa20.87■□□□□ 0.93
LINC00639-205ENST00000557440 CSRNP3Q8WYN3 585 aa20.86■□□□□ 0.93
LINC00639-205ENST00000557440 NACADO15069 1562 aa20.82■□□□□ 0.92
LINC00639-205ENST00000557440 ITGAEP38570 1179 aa20.81■□□□□ 0.92
LINC00639-205ENST00000557440 ATP1B4Q9UN42 357 aaPredicted RBP20.8■□□□□ 0.92
LINC00639-205ENST00000557440 ABCC8Q09428 1581 aa20.77■□□□□ 0.92
LINC00639-205ENST00000557440 SOGA1O94964 1423 aa20.73■□□□□ 0.91
LINC00639-205ENST00000557440 CCDC88BA6NC98 1476 aa20.7■□□□□ 0.9
LINC00639-205ENST00000557440 DIEXFQ68CQ4 756 aaKnown RBP20.7■□□□□ 0.9
LINC00639-205ENST00000557440 BAZ1AQ9NRL2 1556 aaPredicted RBP20.58■□□□□ 0.88
LINC00639-205ENST00000557440 CEP162Q5TB80 1403 aa20.58■□□□□ 0.88
LINC00639-205ENST00000557440 RUSC2Q8N2Y8 1516 aa20.56■□□□□ 0.88
LINC00639-205ENST00000557440 SCAF1Q9H7N4 1312 aaKnown RBP20.5■□□□□ 0.87
LINC00639-205ENST00000557440 CENPBP07199 599 aaPredicted RBP20.5■□□□□ 0.87
LINC00639-205ENST00000557440 P3H3Q8IVL6 736 aa20.45■□□□□ 0.86
LINC00639-205ENST00000557440 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
LINC00639-205ENST00000557440 NEUROD1Q13562 356 aa20.42■□□□□ 0.86
LINC00639-205ENST00000557440 GTF3C3Q9Y5Q9 886 aa20.41■□□□□ 0.86
LINC00639-205ENST00000557440 ZNF316A6NFI3 1004 aaPredicted RBP20.33■□□□□ 0.84
LINC00639-205ENST00000557440 TNIKQ9UKE5 1360 aa20.32■□□□□ 0.84
LINC00639-205ENST00000557440 CLIP1P30622 1438 aa20.31■□□□□ 0.84
LINC00639-205ENST00000557440 ACIN1Q9UKV3 1341 aaKnown RBP20.29■□□□□ 0.84
LINC00639-205ENST00000557440 TOP2AP11388 1531 aaKnown RBP20.29■□□□□ 0.84
LINC00639-205ENST00000557440 SMARCA4P51532 1647 aa20.29■□□□□ 0.84
LINC00639-205ENST00000557440 BAZ1BQ9UIG0 1483 aaKnown RBP20.25■□□□□ 0.83
LINC00639-205ENST00000557440 FAM50AQ14320 339 aaKnown RBP20.25■□□□□ 0.83
LINC00639-205ENST00000557440 GOLGA3Q08378 1498 aa20.24■□□□□ 0.83
LINC00639-205ENST00000557440 SMARCA2P51531 1590 aa20.22■□□□□ 0.83
LINC00639-205ENST00000557440 MIER1Q8N108 512 aa20.2■□□□□ 0.82
LINC00639-205ENST00000557440 ARID3CA6NKF2 412 aa20.14■□□□□ 0.81
LINC00639-205ENST00000557440 KANK4Q5T7N3 995 aaPredicted RBP20.14■□□□□ 0.81
LINC00639-205ENST00000557440 RAPGEF2Q9Y4G8 1499 aa20.09■□□□□ 0.81
LINC00639-205ENST00000557440 EEA1Q15075 1411 aa20.09■□□□□ 0.81
LINC00639-205ENST00000557440 CEP164Q9UPV0 1460 aa20.07■□□□□ 0.8
LINC00639-205ENST00000557440 ATAD2BQ9ULI0 1458 aa20.06■□□□□ 0.8
LINC00639-205ENST00000557440 HIRIP3Q9BW71 556 aaPredicted RBP20.04■□□□□ 0.8
LINC00639-205ENST00000557440 CNGB1Q14028 1251 aaPredicted RBP19.99■□□□□ 0.79
LINC00639-205ENST00000557440 PELP1Q8IZL8 1130 aaKnown RBP19.92■□□□□ 0.78
LINC00639-205ENST00000557440 VPS8Q8N3P4 1428 aa19.92■□□□□ 0.78
LINC00639-205ENST00000557440 SYNJ1O43426 1573 aa19.92■□□□□ 0.78
LINC00639-205ENST00000557440 BCANQ96GW7 911 aa19.88■□□□□ 0.77
LINC00639-205ENST00000557440 BICRAQ9NZM4 1560 aa19.87■□□□□ 0.77
LINC00639-205ENST00000557440 SIN3AQ96ST3 1273 aa19.84■□□□□ 0.77
LINC00639-205ENST00000557440 UNC13AQ9UPW8 1703 aa19.83■□□□□ 0.77
LINC00639-205ENST00000557440 KIF27Q86VH2 1401 aa19.83■□□□□ 0.76
LINC00639-205ENST00000557440 DDX10Q13206 875 aaKnown RBP19.82■□□□□ 0.76
LINC00639-205ENST00000557440 CUX2O14529 1486 aa19.78■□□□□ 0.76
LINC00639-205ENST00000557440 EIF4G1Q04637 1599 aaKnown RBP19.78■□□□□ 0.76
LINC00639-205ENST00000557440 CHIC2Q9UKJ5 165 aa19.77■□□□□ 0.75
LINC00639-205ENST00000557440 TRIM52Q96A61 297 aa19.74■□□□□ 0.75
LINC00639-205ENST00000557440 POLR3GLQ9BT43 218 aa19.74■□□□□ 0.75
LINC00639-205ENST00000557440 CARMIL1Q5VZK9 1371 aa19.68■□□□□ 0.74
LINC00639-205ENST00000557440 FBLN2P98095 1184 aa19.68■□□□□ 0.74
LINC00639-205ENST00000557440 KCNH8Q96L42 1107 aa19.67■□□□□ 0.74
LINC00639-205ENST00000557440 CCNB3Q8WWL7 1395 aa19.66■□□□□ 0.74
LINC00639-205ENST00000557440 KIF21BO75037 1637 aa19.66■□□□□ 0.74
LINC00639-205ENST00000557440 ARAP1Q96P48 1450 aa19.61■□□□□ 0.73
LINC00639-205ENST00000557440 RRP7BPQ9NSQ0 103 aa19.61■□□□□ 0.73
LINC00639-205ENST00000557440 DHX57Q6P158 1386 aaKnown RBP19.6■□□□□ 0.73
LINC00639-205ENST00000557440 DNAJC5BQ9UF47 199 aa19.58■□□□□ 0.73
LINC00639-205ENST00000557440 TDRD9Q8NDG6 1382 aaKnown RBP19.57■□□□□ 0.72
LINC00639-205ENST00000557440 ZNF326Q5BKZ1 582 aaKnown RBP19.56■□□□□ 0.72
LINC00639-205ENST00000557440 RAB3GAP2Q9H2M9 1393 aa19.56■□□□□ 0.72
LINC00639-205ENST00000557440 IGF1RP08069 1367 aa19.54■□□□□ 0.72
LINC00639-205ENST00000557440 MTUS2Q5JR59 1369 aa19.53■□□□□ 0.72
LINC00639-205ENST00000557440 CADPSQ9ULU8 1353 aa19.53■□□□□ 0.72
LINC00639-205ENST00000557440 FHOD3Q2V2M9 1422 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms