RNA–Protein interactions for RNA: ENST00000548860.5

CACNB3-209, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 2

Gene CACNB3, Length 4,029 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-209ENST00000548860 NISCHQ9Y2I1 1504 aa26.84■■□□□ 1.89
CACNB3-209ENST00000548860 DCAF8L2P0C7V8 631 aa25.07■■□□□ 1.6
CACNB3-209ENST00000548860 SHROOM4Q9ULL8 1493 aa24.98■■□□□ 1.59
CACNB3-209ENST00000548860 SUPT5HO00267 1087 aaKnown RBP24.83■■□□□ 1.57
CACNB3-209ENST00000548860 EHMT2Q96KQ7 1210 aa23.8■■□□□ 1.4
CACNB3-209ENST00000548860 PCGF6Q9BYE7 350 aa23.5■■□□□ 1.35
CACNB3-209ENST00000548860 FAM9AQ8IZU1 332 aaPredicted RBP23.3■■□□□ 1.32
CACNB3-209ENST00000548860 LOC105371045A0A1W2PR82 267 aa23.14■■□□□ 1.29
CACNB3-209ENST00000548860 CHIC1Q5VXU3 224 aa23.1■■□□□ 1.29
CACNB3-209ENST00000548860 PPARGC1BQ86YN6 1023 aaKnown RBP23■■□□□ 1.27
CACNB3-209ENST00000548860 TTBK1Q5TCY1 1321 aaPredicted RBP22.93■■□□□ 1.26
CACNB3-209ENST00000548860 HRCP23327 699 aa22.73■■□□□ 1.23
CACNB3-209ENST00000548860 TRIM41Q8WV44 630 aa22.66■■□□□ 1.22
CACNB3-209ENST00000548860 ZCCHC6Q5VYS8 1495 aaKnown RBP22.57■■□□□ 1.2
CACNB3-209ENST00000548860 MYO15BQ96JP2 1530 aa22.5■■□□□ 1.19
CACNB3-209ENST00000548860 RANGAP1P46060 587 aaPredicted RBP22.35■■□□□ 1.17
CACNB3-209ENST00000548860 CCDC180Q9P1Z9 1646 aa22.29■■□□□ 1.16
CACNB3-209ENST00000548860 TRIM26Q12899 539 aaPredicted RBP22.27■■□□□ 1.15
CACNB3-209ENST00000548860 CCER1Q8TC90 406 aaPredicted RBP22.11■■□□□ 1.13
CACNB3-209ENST00000548860 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.02■■□□□ 1.12
CACNB3-209ENST00000548860 ABCC9O60706 1549 aa21.98■■□□□ 1.11
CACNB3-209ENST00000548860 UBTFP17480 764 aaKnown RBP21.96■■□□□ 1.11
CACNB3-209ENST00000548860 YTHDC1Q96MU7 727 aaKnown RBP21.82■■□□□ 1.08
CACNB3-209ENST00000548860 ZEB1P37275 1124 aaPredicted RBP21.78■■□□□ 1.08
CACNB3-209ENST00000548860 SCRIBQ14160 1630 aa21.76■■□□□ 1.07
CACNB3-209ENST00000548860 PABPN1Q86U42 306 aaKnown RBP eCLIP21.75■■□□□ 1.07
CACNB3-209ENST00000548860 HNRNPUL2Q1KMD3 747 aaKnown RBP21.67■■□□□ 1.06
CACNB3-209ENST00000548860 APLP2Q06481 763 aa21.64■■□□□ 1.06
CACNB3-209ENST00000548860 DCAF1Q9Y4B6 1507 aa21.5■■□□□ 1.03
CACNB3-209ENST00000548860 RSF1Q96T23 1441 aaPredicted RBP21.49■■□□□ 1.03
CACNB3-209ENST00000548860 ITGAEP38570 1179 aa21.45■■□□□ 1.02
CACNB3-209ENST00000548860 ATP1B4Q9UN42 357 aaPredicted RBP21.42■■□□□ 1.02
CACNB3-209ENST00000548860 DIEXFQ68CQ4 756 aaKnown RBP21.38■■□□□ 1.01
CACNB3-209ENST00000548860 CECR2Q9BXF3 1484 aa21.34■■□□□ 1.01
CACNB3-209ENST00000548860 CENPBP07199 599 aaPredicted RBP21.33■■□□□ 1.01
CACNB3-209ENST00000548860 SCAF1Q9H7N4 1312 aaKnown RBP21.25■□□□□ 0.99
CACNB3-209ENST00000548860 RB1CC1Q8TDY2 1594 aa21.25■□□□□ 0.99
CACNB3-209ENST00000548860 GTF3C3Q9Y5Q9 886 aa21.22■□□□□ 0.99
CACNB3-209ENST00000548860 CSRNP3Q8WYN3 585 aa21.14■□□□□ 0.97
CACNB3-209ENST00000548860 NEUROD1Q13562 356 aa21.13■□□□□ 0.97
CACNB3-209ENST00000548860 MROH2BQ7Z745 1585 aa21.1■□□□□ 0.97
CACNB3-209ENST00000548860 ACIN1Q9UKV3 1341 aaKnown RBP21■□□□□ 0.95
CACNB3-209ENST00000548860 WIZO95785 1651 aa20.97■□□□□ 0.95
CACNB3-209ENST00000548860 ZNF316A6NFI3 1004 aaPredicted RBP20.91■□□□□ 0.94
CACNB3-209ENST00000548860 NACADO15069 1562 aa20.89■□□□□ 0.93
CACNB3-209ENST00000548860 PELP1Q8IZL8 1130 aaKnown RBP20.88■□□□□ 0.93
CACNB3-209ENST00000548860 SOGA1O94964 1423 aa20.88■□□□□ 0.93
CACNB3-209ENST00000548860 P3H3Q8IVL6 736 aa20.87■□□□□ 0.93
CACNB3-209ENST00000548860 ABCC8Q09428 1581 aa20.84■□□□□ 0.93
CACNB3-209ENST00000548860 MIER1Q8N108 512 aa20.81■□□□□ 0.92
CACNB3-209ENST00000548860 CNGB1Q14028 1251 aaPredicted RBP20.81■□□□□ 0.92
CACNB3-209ENST00000548860 CEP162Q5TB80 1403 aa20.8■□□□□ 0.92
CACNB3-209ENST00000548860 CCDC88BA6NC98 1476 aa20.78■□□□□ 0.92
CACNB3-209ENST00000548860 FAM50AQ14320 339 aaKnown RBP20.75■□□□□ 0.91
CACNB3-209ENST00000548860 BCANQ96GW7 911 aa20.73■□□□□ 0.91
CACNB3-209ENST00000548860 RUSC2Q8N2Y8 1516 aa20.67■□□□□ 0.9
CACNB3-209ENST00000548860 HIRIP3Q9BW71 556 aaPredicted RBP20.65■□□□□ 0.9
CACNB3-209ENST00000548860 ARID3CA6NKF2 412 aa20.61■□□□□ 0.89
CACNB3-209ENST00000548860 BAZ1AQ9NRL2 1556 aaPredicted RBP20.56■□□□□ 0.88
CACNB3-209ENST00000548860 CLIP1P30622 1438 aa20.54■□□□□ 0.88
CACNB3-209ENST00000548860 WRNQ14191 1432 aaPredicted RBP eCLIP20.5■□□□□ 0.87
CACNB3-209ENST00000548860 TNIKQ9UKE5 1360 aa20.48■□□□□ 0.87
CACNB3-209ENST00000548860 POLR3GLQ9BT43 218 aa20.47■□□□□ 0.87
CACNB3-209ENST00000548860 KANK4Q5T7N3 995 aaPredicted RBP20.42■□□□□ 0.86
CACNB3-209ENST00000548860 DDX10Q13206 875 aaKnown RBP20.41■□□□□ 0.86
CACNB3-209ENST00000548860 SMARCA4P51532 1647 aa20.39■□□□□ 0.86
CACNB3-209ENST00000548860 GOLGA3Q08378 1498 aa20.39■□□□□ 0.85
CACNB3-209ENST00000548860 TOP2AP11388 1531 aaKnown RBP20.35■□□□□ 0.85
CACNB3-209ENST00000548860 NEFLP07196 543 aa20.34■□□□□ 0.85
CACNB3-209ENST00000548860 SMARCA2P51531 1590 aa20.32■□□□□ 0.84
CACNB3-209ENST00000548860 MYT1Q01538 1121 aa20.3■□□□□ 0.84
CACNB3-209ENST00000548860 TRIM52Q96A61 297 aa20.3■□□□□ 0.84
CACNB3-209ENST00000548860 SIN3AQ96ST3 1273 aa20.29■□□□□ 0.84
CACNB3-209ENST00000548860 UNC13AQ9UPW8 1703 aa20.25■□□□□ 0.83
CACNB3-209ENST00000548860 SENP3-EIF4A1A0A087X0R7 540 aa20.24■□□□□ 0.83
CACNB3-209ENST00000548860 CHIC2Q9UKJ5 165 aa20.21■□□□□ 0.83
CACNB3-209ENST00000548860 KCNH8Q96L42 1107 aa20.21■□□□□ 0.83
CACNB3-209ENST00000548860 BAZ1BQ9UIG0 1483 aaKnown RBP20.21■□□□□ 0.83
CACNB3-209ENST00000548860 RAPGEF2Q9Y4G8 1499 aa20.18■□□□□ 0.82
CACNB3-209ENST00000548860 FKBP8Q14318 412 aa20.18■□□□□ 0.82
CACNB3-209ENST00000548860 CEP164Q9UPV0 1460 aa20.18■□□□□ 0.82
CACNB3-209ENST00000548860 ZNF326Q5BKZ1 582 aaKnown RBP20.16■□□□□ 0.82
CACNB3-209ENST00000548860 EEA1Q15075 1411 aa20.15■□□□□ 0.82
CACNB3-209ENST00000548860 IRX6P78412 446 aaPredicted RBP20.14■□□□□ 0.81
CACNB3-209ENST00000548860 BICRAQ9NZM4 1560 aa20.12■□□□□ 0.81
CACNB3-209ENST00000548860 EIF4G1Q04637 1599 aaKnown RBP20.11■□□□□ 0.81
CACNB3-209ENST00000548860 ANP32CO43423 234 aa20.08■□□□□ 0.81
CACNB3-209ENST00000548860 VPS8Q8N3P4 1428 aa20.08■□□□□ 0.8
CACNB3-209ENST00000548860 ATAD2BQ9ULI0 1458 aa20.05■□□□□ 0.8
CACNB3-209ENST00000548860 ERICH6Q7L0X2 663 aa20.05■□□□□ 0.8
CACNB3-209ENST00000548860 FBLN2P98095 1184 aa20.03■□□□□ 0.8
CACNB3-209ENST00000548860 RRP7BPQ9NSQ0 103 aa20.02■□□□□ 0.79
CACNB3-209ENST00000548860 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
CACNB3-209ENST00000548860 SUPT16HQ9Y5B9 1047 aaKnown RBP19.97■□□□□ 0.79
CACNB3-209ENST00000548860 HNRNPUQ00839 825 aaKnown RBP eCLIP19.95■□□□□ 0.78
CACNB3-209ENST00000548860 ZNF777Q9ULD5 760 aaPredicted RBP19.94■□□□□ 0.78
CACNB3-209ENST00000548860 KIF27Q86VH2 1401 aa19.92■□□□□ 0.78
CACNB3-209ENST00000548860 CCNB3Q8WWL7 1395 aa19.92■□□□□ 0.78
CACNB3-209ENST00000548860 FAM9BQ8IZU0 186 aa19.91■□□□□ 0.78
CACNB3-209ENST00000548860 TONSLQ96HA7 1378 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms