RNA–Protein interactions for RNA: ENST00000548220.1

PTPRR-207, Transcript of protein tyrosine phosphatase, receptor type R, humanhuman

TSL 2

Gene PTPRR, Length 1,374 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRR-207ENST00000548220 AEBP2Q6ZN18 517 aaPredicted RBP19.7■□□□□ 0.74
PTPRR-207ENST00000548220 CHIC1Q5VXU3 224 aa18.65■□□□□ 0.58
PTPRR-207ENST00000548220 SENP3Q9H4L4 574 aaPredicted RBP16.94■□□□□ 0.3
PTPRR-207ENST00000548220 PHF23Q9BUL5 403 aaPredicted RBP16.64■□□□□ 0.25
PTPRR-207ENST00000548220 FOXD1Q16676 465 aa15.73■□□□□ 0.11
PTPRR-207ENST00000548220 PLPPR3Q6T4P5 718 aa14.88□□□□□ -0.03
PTPRR-207ENST00000548220 MSH5O43196 834 aa14.86□□□□□ -0.03
PTPRR-207ENST00000548220 POTEDQ86YR6 584 aa14.85□□□□□ -0.03
PTPRR-207ENST00000548220 PIAS4Q8N2W9 510 aaPredicted RBP14.71□□□□□ -0.06
PTPRR-207ENST00000548220 NISCHQ9Y2I1 1504 aa14.61□□□□□ -0.07
PTPRR-207ENST00000548220 PPP6R1Q9UPN7 881 aa14.55□□□□□ -0.08
PTPRR-207ENST00000548220 ADRA2BP18089 450 aa14.52□□□□□ -0.08
PTPRR-207ENST00000548220 SCAF1Q9H7N4 1312 aaKnown RBP13.43□□□□□ -0.26
PTPRR-207ENST00000548220 DMRT2Q9Y5R5 561 aa13.39□□□□□ -0.27
PTPRR-207ENST00000548220 MAPK8IP2Q13387 824 aaPredicted RBP13.35□□□□□ -0.27
PTPRR-207ENST00000548220 PPP4R3CPQ6ZMV5 832 aa12.98□□□□□ -0.33
PTPRR-207ENST00000548220 CCDC180Q9P1Z9 1646 aa12.95□□□□□ -0.34
PTPRR-207ENST00000548220 DCAF8L1A6NGE4 600 aa12.85□□□□□ -0.35
PTPRR-207ENST00000548220 HOXD11P31277 338 aaPredicted RBP12.83□□□□□ -0.36
PTPRR-207ENST00000548220 CNKSR2Q8WXI2 1034 aa12.81□□□□□ -0.36
PTPRR-207ENST00000548220 CACNB1Q02641 598 aaPredicted RBP12.8□□□□□ -0.36
PTPRR-207ENST00000548220 RNF216Q9NWF9 866 aaPredicted RBP12.72□□□□□ -0.37
PTPRR-207ENST00000548220 RNF39Q9H2S5 420 aa12.62□□□□□ -0.39
PTPRR-207ENST00000548220 NCBP3Q53F19 620 aaKnown RBP12.53□□□□□ -0.4
PTPRR-207ENST00000548220 DNAJC5BQ9UF47 199 aa12.48□□□□□ -0.41
PTPRR-207ENST00000548220 C1QBPQ07021 282 aaKnown RBP12.47□□□□□ -0.41
PTPRR-207ENST00000548220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.26□□□□□ -0.45
PTPRR-207ENST00000548220 NPM3O75607 178 aaKnown RBP12.25□□□□□ -0.45
PTPRR-207ENST00000548220 ABCC9O60706 1549 aa12.22□□□□□ -0.45
PTPRR-207ENST00000548220 DCAF1Q9Y4B6 1507 aa12.22□□□□□ -0.45
PTPRR-207ENST00000548220 ZCCHC6Q5VYS8 1495 aaKnown RBP12.22□□□□□ -0.45
PTPRR-207ENST00000548220 MYO15BQ96JP2 1530 aa12.21□□□□□ -0.45
PTPRR-207ENST00000548220 NACADO15069 1562 aa12.11□□□□□ -0.47
PTPRR-207ENST00000548220 RB1CC1Q8TDY2 1594 aa12.02□□□□□ -0.49
PTPRR-207ENST00000548220 DCAF8L2P0C7V8 631 aa11.93□□□□□ -0.5
PTPRR-207ENST00000548220 U3KPZ7 1027 aaPredicted RBP11.93□□□□□ -0.5
PTPRR-207ENST00000548220 KCNA4P22459 653 aa11.88□□□□□ -0.51
PTPRR-207ENST00000548220 CAPN15O75808 1086 aa11.82□□□□□ -0.52
PTPRR-207ENST00000548220 SPINK5Q9NQ38 1064 aaPredicted RBP11.78□□□□□ -0.52
PTPRR-207ENST00000548220 DSG3P32926 999 aa11.76□□□□□ -0.53
PTPRR-207ENST00000548220 APLP2Q06481 763 aa11.74□□□□□ -0.53
PTPRR-207ENST00000548220 SLC4A2P04920 1241 aa11.71□□□□□ -0.53
PTPRR-207ENST00000548220 UNC13AQ9UPW8 1703 aa11.7□□□□□ -0.54
PTPRR-207ENST00000548220 SHROOM4Q9ULL8 1493 aa11.67□□□□□ -0.54
PTPRR-207ENST00000548220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.67□□□□□ -0.54
PTPRR-207ENST00000548220 HNRNPUL2Q1KMD3 747 aaKnown RBP11.67□□□□□ -0.54
PTPRR-207ENST00000548220 SCRIBQ14160 1630 aa11.64□□□□□ -0.55
PTPRR-207ENST00000548220 ZNF219Q9P2Y4 722 aaPredicted RBP11.62□□□□□ -0.55
PTPRR-207ENST00000548220 BICRAQ9NZM4 1560 aa11.59□□□□□ -0.55
PTPRR-207ENST00000548220 TRHP20396 242 aaPredicted RBP11.58□□□□□ -0.56
PTPRR-207ENST00000548220 SAMD1Q6SPF0 538 aaPredicted RBP11.57□□□□□ -0.56
PTPRR-207ENST00000548220 PABPN1Q86U42 306 aaKnown RBP eCLIP11.55□□□□□ -0.56
PTPRR-207ENST00000548220 ABCB7O75027 752 aa11.5□□□□□ -0.57
PTPRR-207ENST00000548220 POTEHQ6S545 545 aa11.49□□□□□ -0.57
PTPRR-207ENST00000548220 MYCNP04198 464 aaPredicted RBP11.4□□□□□ -0.59
PTPRR-207ENST00000548220 BAZ1AQ9NRL2 1556 aaPredicted RBP11.33□□□□□ -0.6
PTPRR-207ENST00000548220 RBM42Q9BTD8 480 aaKnown RBP11.31□□□□□ -0.6
PTPRR-207ENST00000548220 EIF4G1Q04637 1599 aaKnown RBP11.27□□□□□ -0.61
PTPRR-207ENST00000548220 SMARCA4P51532 1647 aa11.26□□□□□ -0.61
PTPRR-207ENST00000548220 CECR2Q9BXF3 1484 aa11.25□□□□□ -0.61
PTPRR-207ENST00000548220 POLA2Q14181 598 aa11.24□□□□□ -0.61
PTPRR-207ENST00000548220 SLC4A1APQ9BWU0 796 aaKnown RBP11.24□□□□□ -0.61
PTPRR-207ENST00000548220 PEG3Q9GZU2 1588 aa11.24□□□□□ -0.61
PTPRR-207ENST00000548220 RSF1Q96T23 1441 aaPredicted RBP11.2□□□□□ -0.62
PTPRR-207ENST00000548220 SMARCA2P51531 1590 aa11.2□□□□□ -0.62
PTPRR-207ENST00000548220 MROH2BQ7Z745 1585 aa11.19□□□□□ -0.62
PTPRR-207ENST00000548220 FOXD4L1Q9NU39 408 aa11.19□□□□□ -0.62
PTPRR-207ENST00000548220 NCAPD3P42695 1498 aa11.16□□□□□ -0.62
PTPRR-207ENST00000548220 ATAD2BQ9ULI0 1458 aa11.14□□□□□ -0.63
PTPRR-207ENST00000548220 CC2D2AQ9P2K1 1620 aa11.14□□□□□ -0.63
PTPRR-207ENST00000548220 HMGXB3Q12766 1538 aa11.12□□□□□ -0.63
PTPRR-207ENST00000548220 ZBTB12Q9Y330 459 aaPredicted RBP11.11□□□□□ -0.63
PTPRR-207ENST00000548220 WIZO95785 1651 aa11.07□□□□□ -0.64
PTPRR-207ENST00000548220 CHRDL2Q6WN34 429 aa11.05□□□□□ -0.64
PTPRR-207ENST00000548220 BAZ1BQ9UIG0 1483 aaKnown RBP11.05□□□□□ -0.64
PTPRR-207ENST00000548220 TOP2AP11388 1531 aaKnown RBP11.03□□□□□ -0.64
PTPRR-207ENST00000548220 ATF5Q9Y2D1 282 aaPredicted RBP11.03□□□□□ -0.64
PTPRR-207ENST00000548220 AKT1S1Q96B36 256 aa11□□□□□ -0.65
PTPRR-207ENST00000548220 SUPT5HO00267 1087 aaKnown RBP10.98□□□□□ -0.65
PTPRR-207ENST00000548220 ATXN8OSP0DMR3 200 aa10.9□□□□□ -0.66
PTPRR-207ENST00000548220 ZBTB22O15209 634 aa10.89□□□□□ -0.67
PTPRR-207ENST00000548220 OSCARQ8IYS5 282 aa10.89□□□□□ -0.67
PTPRR-207ENST00000548220 CCDC88BA6NC98 1476 aa10.88□□□□□ -0.67
PTPRR-207ENST00000548220 REM2Q8IYK8 340 aaPredicted RBP10.85□□□□□ -0.67
PTPRR-207ENST00000548220 LAMC3Q9Y6N6 1575 aa10.82□□□□□ -0.68
PTPRR-207ENST00000548220 CFTRP13569 1480 aa10.81□□□□□ -0.68
PTPRR-207ENST00000548220 CADPSQ9ULU8 1353 aa10.81□□□□□ -0.68
PTPRR-207ENST00000548220 EHMT2Q96KQ7 1210 aa10.79□□□□□ -0.68
PTPRR-207ENST00000548220 PRDM2Q13029 1718 aa10.79□□□□□ -0.68
PTPRR-207ENST00000548220 FBLN2P98095 1184 aa10.75□□□□□ -0.69
PTPRR-207ENST00000548220 PIP4P2Q8N4L2 257 aa10.74□□□□□ -0.69
PTPRR-207ENST00000548220 PITPNM1O00562 1244 aa10.73□□□□□ -0.69
PTPRR-207ENST00000548220 PDS5BQ9NTI5 1447 aa10.73□□□□□ -0.69
PTPRR-207ENST00000548220 SPDYE2BA6NHP3 402 aa10.71□□□□□ -0.69
PTPRR-207ENST00000548220 SPDYE6P0CI01 402 aa10.71□□□□□ -0.69
PTPRR-207ENST00000548220 SPDYE2Q495Y8 402 aa10.71□□□□□ -0.69
PTPRR-207ENST00000548220 SP7Q8TDD2 431 aaPredicted RBP10.7□□□□□ -0.7
PTPRR-207ENST00000548220 FXR2P51116 673 aaKnown RBP eCLIP10.66□□□□□ -0.7
PTPRR-207ENST00000548220 ABCC8Q09428 1581 aa10.65□□□□□ -0.7
PTPRR-207ENST00000548220 NESP48681 1621 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms