RNA–Protein interactions for RNA: ENST00000545067.6

CCDC7-210, Transcript of coiled-coil domain containing 7, humanhuman

TSL 1 (best)

Gene CCDC7, Length 4,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-210ENST00000545067 NISCHQ9Y2I1 1504 aa16.44■□□□□ 0.22
CCDC7-210ENST00000545067 DCAF8L2P0C7V8 631 aa15.33■□□□□ 0.04
CCDC7-210ENST00000545067 SHROOM4Q9ULL8 1493 aa15.22■□□□□ 0.03
CCDC7-210ENST00000545067 SUPT5HO00267 1087 aaKnown RBP15.14■□□□□ 0.01
CCDC7-210ENST00000545067 EHMT2Q96KQ7 1210 aa14.4□□□□□ -0.1
CCDC7-210ENST00000545067 PCGF6Q9BYE7 350 aa14.27□□□□□ -0.12
CCDC7-210ENST00000545067 FAM9AQ8IZU1 332 aaPredicted RBP14.17□□□□□ -0.14
CCDC7-210ENST00000545067 CHIC1Q5VXU3 224 aa14.12□□□□□ -0.15
CCDC7-210ENST00000545067 LOC105371045A0A1W2PR82 267 aa14.05□□□□□ -0.16
CCDC7-210ENST00000545067 TRIM41Q8WV44 630 aa13.89□□□□□ -0.19
CCDC7-210ENST00000545067 TTBK1Q5TCY1 1321 aaPredicted RBP13.88□□□□□ -0.19
CCDC7-210ENST00000545067 PPARGC1BQ86YN6 1023 aaKnown RBP13.87□□□□□ -0.19
CCDC7-210ENST00000545067 HRCP23327 699 aa13.84□□□□□ -0.19
CCDC7-210ENST00000545067 ZCCHC6Q5VYS8 1495 aaKnown RBP13.77□□□□□ -0.21
CCDC7-210ENST00000545067 MYO15BQ96JP2 1530 aa13.68□□□□□ -0.22
CCDC7-210ENST00000545067 TRIM26Q12899 539 aaPredicted RBP13.63□□□□□ -0.23
CCDC7-210ENST00000545067 RANGAP1P46060 587 aaPredicted RBP13.59□□□□□ -0.23
CCDC7-210ENST00000545067 ABCC9O60706 1549 aa13.54□□□□□ -0.24
CCDC7-210ENST00000545067 CCER1Q8TC90 406 aaPredicted RBP13.5□□□□□ -0.25
CCDC7-210ENST00000545067 UBTFP17480 764 aaKnown RBP13.46□□□□□ -0.26
CCDC7-210ENST00000545067 CCDC180Q9P1Z9 1646 aa13.46□□□□□ -0.26
CCDC7-210ENST00000545067 ZEB1P37275 1124 aaPredicted RBP13.4□□□□□ -0.26
CCDC7-210ENST00000545067 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.38□□□□□ -0.27
CCDC7-210ENST00000545067 SCRIBQ14160 1630 aa13.38□□□□□ -0.27
CCDC7-210ENST00000545067 PABPN1Q86U42 306 aaKnown RBP eCLIP13.33□□□□□ -0.28
CCDC7-210ENST00000545067 APLP2Q06481 763 aa13.32□□□□□ -0.28
CCDC7-210ENST00000545067 RSF1Q96T23 1441 aaPredicted RBP13.23□□□□□ -0.29
CCDC7-210ENST00000545067 YTHDC1Q96MU7 727 aaKnown RBP13.22□□□□□ -0.29
CCDC7-210ENST00000545067 DCAF1Q9Y4B6 1507 aa13.21□□□□□ -0.29
CCDC7-210ENST00000545067 HNRNPUL2Q1KMD3 747 aaKnown RBP13.21□□□□□ -0.3
CCDC7-210ENST00000545067 CECR2Q9BXF3 1484 aa13.09□□□□□ -0.31
CCDC7-210ENST00000545067 ATP1B4Q9UN42 357 aaPredicted RBP13.09□□□□□ -0.31
CCDC7-210ENST00000545067 CENPBP07199 599 aaPredicted RBP13.06□□□□□ -0.32
CCDC7-210ENST00000545067 ITGAEP38570 1179 aa13.06□□□□□ -0.32
CCDC7-210ENST00000545067 DIEXFQ68CQ4 756 aaKnown RBP13.04□□□□□ -0.32
CCDC7-210ENST00000545067 RB1CC1Q8TDY2 1594 aa13□□□□□ -0.33
CCDC7-210ENST00000545067 CSRNP3Q8WYN3 585 aa13□□□□□ -0.33
CCDC7-210ENST00000545067 MROH2BQ7Z745 1585 aa12.91□□□□□ -0.34
CCDC7-210ENST00000545067 GTF3C3Q9Y5Q9 886 aa12.87□□□□□ -0.35
CCDC7-210ENST00000545067 SCAF1Q9H7N4 1312 aaKnown RBP12.85□□□□□ -0.35
CCDC7-210ENST00000545067 NEUROD1Q13562 356 aa12.8□□□□□ -0.36
CCDC7-210ENST00000545067 ACIN1Q9UKV3 1341 aaKnown RBP12.78□□□□□ -0.36
CCDC7-210ENST00000545067 ZNF316A6NFI3 1004 aaPredicted RBP12.78□□□□□ -0.36
CCDC7-210ENST00000545067 NACADO15069 1562 aa12.78□□□□□ -0.36
CCDC7-210ENST00000545067 SOGA1O94964 1423 aa12.78□□□□□ -0.36
CCDC7-210ENST00000545067 WIZO95785 1651 aa12.77□□□□□ -0.36
CCDC7-210ENST00000545067 CEP162Q5TB80 1403 aa12.76□□□□□ -0.37
CCDC7-210ENST00000545067 ABCC8Q09428 1581 aa12.76□□□□□ -0.37
CCDC7-210ENST00000545067 PELP1Q8IZL8 1130 aaKnown RBP12.75□□□□□ -0.37
CCDC7-210ENST00000545067 CCDC88BA6NC98 1476 aa12.74□□□□□ -0.37
CCDC7-210ENST00000545067 P3H3Q8IVL6 736 aa12.73□□□□□ -0.37
CCDC7-210ENST00000545067 FAM50AQ14320 339 aaKnown RBP12.7□□□□□ -0.38
CCDC7-210ENST00000545067 BAZ1AQ9NRL2 1556 aaPredicted RBP12.67□□□□□ -0.38
CCDC7-210ENST00000545067 MIER1Q8N108 512 aa12.65□□□□□ -0.39
CCDC7-210ENST00000545067 WRNQ14191 1432 aaPredicted RBP eCLIP12.64□□□□□ -0.39
CCDC7-210ENST00000545067 CLIP1P30622 1438 aa12.63□□□□□ -0.39
CCDC7-210ENST00000545067 RUSC2Q8N2Y8 1516 aa12.63□□□□□ -0.39
CCDC7-210ENST00000545067 TNIKQ9UKE5 1360 aa12.62□□□□□ -0.39
CCDC7-210ENST00000545067 CNGB1Q14028 1251 aaPredicted RBP12.6□□□□□ -0.39
CCDC7-210ENST00000545067 GOLGA3Q08378 1498 aa12.57□□□□□ -0.4
CCDC7-210ENST00000545067 ARID3CA6NKF2 412 aa12.55□□□□□ -0.4
CCDC7-210ENST00000545067 BCANQ96GW7 911 aa12.55□□□□□ -0.4
CCDC7-210ENST00000545067 HIRIP3Q9BW71 556 aaPredicted RBP12.51□□□□□ -0.41
CCDC7-210ENST00000545067 EEA1Q15075 1411 aa12.5□□□□□ -0.41
CCDC7-210ENST00000545067 BAZ1BQ9UIG0 1483 aaKnown RBP12.5□□□□□ -0.41
CCDC7-210ENST00000545067 POLR3GLQ9BT43 218 aa12.47□□□□□ -0.41
CCDC7-210ENST00000545067 KANK4Q5T7N3 995 aaPredicted RBP12.47□□□□□ -0.41
CCDC7-210ENST00000545067 TOP2AP11388 1531 aaKnown RBP12.47□□□□□ -0.41
CCDC7-210ENST00000545067 NEFLP07196 543 aa12.46□□□□□ -0.41
CCDC7-210ENST00000545067 CEP164Q9UPV0 1460 aa12.46□□□□□ -0.42
CCDC7-210ENST00000545067 DDX10Q13206 875 aaKnown RBP12.44□□□□□ -0.42
CCDC7-210ENST00000545067 TRIM52Q96A61 297 aa12.42□□□□□ -0.42
CCDC7-210ENST00000545067 SMARCA4P51532 1647 aa12.42□□□□□ -0.42
CCDC7-210ENST00000545067 SMARCA2P51531 1590 aa12.38□□□□□ -0.43
CCDC7-210ENST00000545067 RAPGEF2Q9Y4G8 1499 aa12.38□□□□□ -0.43
CCDC7-210ENST00000545067 SIN3AQ96ST3 1273 aa12.36□□□□□ -0.43
CCDC7-210ENST00000545067 VPS8Q8N3P4 1428 aa12.36□□□□□ -0.43
CCDC7-210ENST00000545067 CHIC2Q9UKJ5 165 aa12.34□□□□□ -0.43
CCDC7-210ENST00000545067 KIF27Q86VH2 1401 aa12.31□□□□□ -0.44
CCDC7-210ENST00000545067 ATAD2BQ9ULI0 1458 aa12.31□□□□□ -0.44
CCDC7-210ENST00000545067 ANP32CO43423 234 aa12.31□□□□□ -0.44
CCDC7-210ENST00000545067 ZNF326Q5BKZ1 582 aaKnown RBP12.3□□□□□ -0.44
CCDC7-210ENST00000545067 FBLN2P98095 1184 aa12.29□□□□□ -0.44
CCDC7-210ENST00000545067 FKBP8Q14318 412 aa12.27□□□□□ -0.44
CCDC7-210ENST00000545067 ERICH6Q7L0X2 663 aa12.25□□□□□ -0.45
CCDC7-210ENST00000545067 CCNB3Q8WWL7 1395 aa12.24□□□□□ -0.45
CCDC7-210ENST00000545067 CUX2O14529 1486 aa12.24□□□□□ -0.45
CCDC7-210ENST00000545067 RRP7BPQ9NSQ0 103 aa12.24□□□□□ -0.45
CCDC7-210ENST00000545067 TONSLQ96HA7 1378 aa12.23□□□□□ -0.45
CCDC7-210ENST00000545067 KCNH8Q96L42 1107 aa12.22□□□□□ -0.45
CCDC7-210ENST00000545067 ZNF777Q9ULD5 760 aaPredicted RBP12.21□□□□□ -0.45
CCDC7-210ENST00000545067 MTUS2Q5JR59 1369 aa12.2□□□□□ -0.46
CCDC7-210ENST00000545067 CARMIL1Q5VZK9 1371 aa12.2□□□□□ -0.46
CCDC7-210ENST00000545067 SYNJ1O43426 1573 aa12.2□□□□□ -0.46
CCDC7-210ENST00000545067 SENP3-EIF4A1A0A087X0R7 540 aa12.2□□□□□ -0.46
CCDC7-210ENST00000545067 IRX6P78412 446 aaPredicted RBP12.19□□□□□ -0.46
CCDC7-210ENST00000545067 DHX57Q6P158 1386 aaKnown RBP12.17□□□□□ -0.46
CCDC7-210ENST00000545067 HNRNPUQ00839 825 aaKnown RBP eCLIP12.17□□□□□ -0.46
CCDC7-210ENST00000545067 RAB3GAP2Q9H2M9 1393 aa12.16□□□□□ -0.46
CCDC7-210ENST00000545067 SUPT16HQ9Y5B9 1047 aaKnown RBP12.15□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms