RNA–Protein interactions for RNA: ENST00000540918.2

TTC39C-203, Transcript of tetratricopeptide repeat domain 39C, humanhuman

TSL 2 BASIC

Gene TTC39C, Length 4,117 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC39C-203ENST00000540918 NISCHQ9Y2I1 1504 aa17.79■□□□□ 0.44
TTC39C-203ENST00000540918 DCAF8L2P0C7V8 631 aa17.76■□□□□ 0.43
TTC39C-203ENST00000540918 SHROOM4Q9ULL8 1493 aa16.88■□□□□ 0.29
TTC39C-203ENST00000540918 SUPT5HO00267 1087 aaKnown RBP16.79■□□□□ 0.28
TTC39C-203ENST00000540918 EHMT2Q96KQ7 1210 aa16.25■□□□□ 0.19
TTC39C-203ENST00000540918 FAM9AQ8IZU1 332 aaPredicted RBP15.82■□□□□ 0.12
TTC39C-203ENST00000540918 TTBK1Q5TCY1 1321 aaPredicted RBP15.55■□□□□ 0.08
TTC39C-203ENST00000540918 RANGAP1P46060 587 aaPredicted RBP15.49■□□□□ 0.07
TTC39C-203ENST00000540918 ABCC9O60706 1549 aa15.47■□□□□ 0.07
TTC39C-203ENST00000540918 TRIM41Q8WV44 630 aa15.37■□□□□ 0.05
TTC39C-203ENST00000540918 PABPN1Q86U42 306 aaKnown RBP eCLIP15.35■□□□□ 0.05
TTC39C-203ENST00000540918 PCGF6Q9BYE7 350 aa15.27■□□□□ 0.04
TTC39C-203ENST00000540918 PPARGC1BQ86YN6 1023 aaKnown RBP15.24■□□□□ 0.03
TTC39C-203ENST00000540918 LOC105371045A0A1W2PR82 267 aa15.18■□□□□ 0.02
TTC39C-203ENST00000540918 CHIC1Q5VXU3 224 aa15.09■□□□□ 0.01
TTC39C-203ENST00000540918 UBTFP17480 764 aaKnown RBP15.08■□□□□ 0
TTC39C-203ENST00000540918 ATP1B4Q9UN42 357 aaPredicted RBP15.04■□□□□ -0
TTC39C-203ENST00000540918 APLP2Q06481 763 aa15.04■□□□□ -0
TTC39C-203ENST00000540918 ZCCHC6Q5VYS8 1495 aaKnown RBP14.73□□□□□ -0.05
TTC39C-203ENST00000540918 SCRIBQ14160 1630 aa14.72□□□□□ -0.05
TTC39C-203ENST00000540918 CCER1Q8TC90 406 aaPredicted RBP14.71□□□□□ -0.06
TTC39C-203ENST00000540918 ITGAEP38570 1179 aa14.67□□□□□ -0.06
TTC39C-203ENST00000540918 HNRNPUL2Q1KMD3 747 aaKnown RBP14.56□□□□□ -0.08
TTC39C-203ENST00000540918 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.53□□□□□ -0.08
TTC39C-203ENST00000540918 TRIM26Q12899 539 aaPredicted RBP14.5□□□□□ -0.09
TTC39C-203ENST00000540918 CCDC180Q9P1Z9 1646 aa14.48□□□□□ -0.09
TTC39C-203ENST00000540918 P3H3Q8IVL6 736 aa14.39□□□□□ -0.11
TTC39C-203ENST00000540918 FBLN2P98095 1184 aa14.39□□□□□ -0.11
TTC39C-203ENST00000540918 ARID3CA6NKF2 412 aa14.38□□□□□ -0.11
TTC39C-203ENST00000540918 YTHDC1Q96MU7 727 aaKnown RBP14.3□□□□□ -0.12
TTC39C-203ENST00000540918 HRCP23327 699 aa14.29□□□□□ -0.12
TTC39C-203ENST00000540918 CSRNP3Q8WYN3 585 aa14.28□□□□□ -0.12
TTC39C-203ENST00000540918 RSF1Q96T23 1441 aaPredicted RBP14.27□□□□□ -0.12
TTC39C-203ENST00000540918 CECR2Q9BXF3 1484 aa14.26□□□□□ -0.13
TTC39C-203ENST00000540918 MYT1LQ9UL68 1186 aa14.24□□□□□ -0.13
TTC39C-203ENST00000540918 CNGB1Q14028 1251 aaPredicted RBP14.24□□□□□ -0.13
TTC39C-203ENST00000540918 ZEB1P37275 1124 aaPredicted RBP14.23□□□□□ -0.13
TTC39C-203ENST00000540918 FAM50AQ14320 339 aaKnown RBP14.22□□□□□ -0.13
TTC39C-203ENST00000540918 MYO15BQ96JP2 1530 aa14.18□□□□□ -0.14
TTC39C-203ENST00000540918 RB1CC1Q8TDY2 1594 aa14.16□□□□□ -0.14
TTC39C-203ENST00000540918 POLR3GLQ9BT43 218 aa14.13□□□□□ -0.15
TTC39C-203ENST00000540918 NACADO15069 1562 aa14.06□□□□□ -0.16
TTC39C-203ENST00000540918 NEUROD1Q13562 356 aa14.06□□□□□ -0.16
TTC39C-203ENST00000540918 TRIM52Q96A61 297 aa13.99□□□□□ -0.17
TTC39C-203ENST00000540918 MROH2BQ7Z745 1585 aa13.97□□□□□ -0.17
TTC39C-203ENST00000540918 ZNF777Q9ULD5 760 aaPredicted RBP13.95□□□□□ -0.18
TTC39C-203ENST00000540918 CENPBP07199 599 aaPredicted RBP13.92□□□□□ -0.18
TTC39C-203ENST00000540918 DCAF1Q9Y4B6 1507 aa13.91□□□□□ -0.18
TTC39C-203ENST00000540918 BAZ1BQ9UIG0 1483 aaKnown RBP13.91□□□□□ -0.18
TTC39C-203ENST00000540918 ZNF326Q5BKZ1 582 aaKnown RBP13.89□□□□□ -0.19
TTC39C-203ENST00000540918 DIEXFQ68CQ4 756 aaKnown RBP13.84□□□□□ -0.19
TTC39C-203ENST00000540918 WRNQ14191 1432 aaPredicted RBP eCLIP13.84□□□□□ -0.19
TTC39C-203ENST00000540918 CHIC2Q9UKJ5 165 aa13.83□□□□□ -0.2
TTC39C-203ENST00000540918 SOGA1O94964 1423 aa13.82□□□□□ -0.2
TTC39C-203ENST00000540918 BAZ1AQ9NRL2 1556 aaPredicted RBP13.81□□□□□ -0.2
TTC39C-203ENST00000540918 CHMP7Q8WUX9 453 aaPredicted RBP13.78□□□□□ -0.2
TTC39C-203ENST00000540918 ABCC8Q09428 1581 aa13.77□□□□□ -0.2
TTC39C-203ENST00000540918 CCDC88BA6NC98 1476 aa13.77□□□□□ -0.21
TTC39C-203ENST00000540918 WIZO95785 1651 aa13.76□□□□□ -0.21
TTC39C-203ENST00000540918 SLC4A1APQ9BWU0 796 aaKnown RBP13.74□□□□□ -0.21
TTC39C-203ENST00000540918 CLIP1P30622 1438 aa13.73□□□□□ -0.21
TTC39C-203ENST00000540918 CEP162Q5TB80 1403 aa13.7□□□□□ -0.22
TTC39C-203ENST00000540918 HIRIP3Q9BW71 556 aaPredicted RBP13.68□□□□□ -0.22
TTC39C-203ENST00000540918 PELP1Q8IZL8 1130 aaKnown RBP13.68□□□□□ -0.22
TTC39C-203ENST00000540918 PLPPR3Q6T4P5 718 aa13.67□□□□□ -0.22
TTC39C-203ENST00000540918 SENP3Q9H4L4 574 aaPredicted RBP13.67□□□□□ -0.22
TTC39C-203ENST00000540918 KCNH8Q96L42 1107 aa13.66□□□□□ -0.22
TTC39C-203ENST00000540918 RRP7BPQ9NSQ0 103 aa13.62□□□□□ -0.23
TTC39C-203ENST00000540918 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.62□□□□□ -0.23
TTC39C-203ENST00000540918 TDRD9Q8NDG6 1382 aaKnown RBP13.61□□□□□ -0.23
TTC39C-203ENST00000540918 CDK11AQ9UQ88 783 aaPredicted RBP13.6□□□□□ -0.23
TTC39C-203ENST00000540918 NEFLP07196 543 aa13.6□□□□□ -0.23
TTC39C-203ENST00000540918 ZNF316A6NFI3 1004 aaPredicted RBP13.59□□□□□ -0.23
TTC39C-203ENST00000540918 MTUS2Q5JR59 1369 aa13.59□□□□□ -0.23
TTC39C-203ENST00000540918 KIF27Q86VH2 1401 aa13.58□□□□□ -0.23
TTC39C-203ENST00000540918 GOLGA3Q08378 1498 aa13.58□□□□□ -0.24
TTC39C-203ENST00000540918 CUX2O14529 1486 aa13.57□□□□□ -0.24
TTC39C-203ENST00000540918 RUSC2Q8N2Y8 1516 aa13.57□□□□□ -0.24
TTC39C-203ENST00000540918 ERCC6Q03468 1493 aa13.56□□□□□ -0.24
TTC39C-203ENST00000540918 ATAD2BQ9ULI0 1458 aa13.55□□□□□ -0.24
TTC39C-203ENST00000540918 KANK4Q5T7N3 995 aaPredicted RBP13.53□□□□□ -0.24
TTC39C-203ENST00000540918 DNAJC5BQ9UF47 199 aa13.53□□□□□ -0.24
TTC39C-203ENST00000540918 TNIKQ9UKE5 1360 aa13.53□□□□□ -0.24
TTC39C-203ENST00000540918 CHGAP10645 457 aaKnown RBP13.53□□□□□ -0.24
TTC39C-203ENST00000540918 BCANQ96GW7 911 aa13.51□□□□□ -0.25
TTC39C-203ENST00000540918 CARMIL1Q5VZK9 1371 aa13.51□□□□□ -0.25
TTC39C-203ENST00000540918 DDX10Q13206 875 aaKnown RBP13.5□□□□□ -0.25
TTC39C-203ENST00000540918 KDM2AQ9Y2K7 1162 aa13.49□□□□□ -0.25
TTC39C-203ENST00000540918 NPM1P06748 294 aaKnown RBP eCLIP13.49□□□□□ -0.25
TTC39C-203ENST00000540918 CEP164Q9UPV0 1460 aa13.47□□□□□ -0.25
TTC39C-203ENST00000540918 EEA1Q15075 1411 aa13.47□□□□□ -0.25
TTC39C-203ENST00000540918 SENP3-EIF4A1A0A087X0R7 540 aa13.46□□□□□ -0.26
TTC39C-203ENST00000540918 SMARCA4P51532 1647 aa13.45□□□□□ -0.26
TTC39C-203ENST00000540918 TOP2AP11388 1531 aaKnown RBP13.44□□□□□ -0.26
TTC39C-203ENST00000540918 SIN3AQ96ST3 1273 aa13.44□□□□□ -0.26
TTC39C-203ENST00000540918 SMARCA2P51531 1590 aa13.44□□□□□ -0.26
TTC39C-203ENST00000540918 CADPSQ9ULU8 1353 aa13.44□□□□□ -0.26
TTC39C-203ENST00000540918 TSPY4P0CV99 314 aa13.43□□□□□ -0.26
TTC39C-203ENST00000540918 TSPY10P0CW01 314 aa13.43□□□□□ -0.26
TTC39C-203ENST00000540918 GTF3C3Q9Y5Q9 886 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms