RNA–Protein interactions for RNA: ENST00000539484.1

CCDC144NL-203, Transcript of coiled-coil domain containing 144 family, N-terminal like, humanhuman

TSL 3

Gene CCDC144NL, Length 751 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144NL-203ENST00000539484 AEBP2Q6ZN18 517 aaPredicted RBP32.73■■■□□ 2.83
CCDC144NL-203ENST00000539484 CHIC1Q5VXU3 224 aa30.64■■■□□ 2.5
CCDC144NL-203ENST00000539484 SENP3Q9H4L4 574 aaPredicted RBP28.06■■■□□ 2.08
CCDC144NL-203ENST00000539484 PHF23Q9BUL5 403 aaPredicted RBP27.62■■■□□ 2.01
CCDC144NL-203ENST00000539484 FOXD1Q16676 465 aa26.21■■□□□ 1.79
CCDC144NL-203ENST00000539484 POTEDQ86YR6 584 aa25.19■■□□□ 1.62
CCDC144NL-203ENST00000539484 MSH5O43196 834 aa24.78■■□□□ 1.56
CCDC144NL-203ENST00000539484 PIAS4Q8N2W9 510 aaPredicted RBP24.36■■□□□ 1.49
CCDC144NL-203ENST00000539484 PLPPR3Q6T4P5 718 aa24.14■■□□□ 1.45
CCDC144NL-203ENST00000539484 PPP6R1Q9UPN7 881 aa24.04■■□□□ 1.44
CCDC144NL-203ENST00000539484 ADRA2BP18089 450 aa23.94■■□□□ 1.42
CCDC144NL-203ENST00000539484 NISCHQ9Y2I1 1504 aa22.47■■□□□ 1.19
CCDC144NL-203ENST00000539484 MAPK8IP2Q13387 824 aaPredicted RBP22.18■■□□□ 1.14
CCDC144NL-203ENST00000539484 DMRT2Q9Y5R5 561 aa22.13■■□□□ 1.13
CCDC144NL-203ENST00000539484 SCAF1Q9H7N4 1312 aaKnown RBP21.97■■□□□ 1.11
CCDC144NL-203ENST00000539484 CACNB1Q02641 598 aaPredicted RBP21.67■■□□□ 1.06
CCDC144NL-203ENST00000539484 DCAF8L1A6NGE4 600 aa21.35■■□□□ 1.01
CCDC144NL-203ENST00000539484 HOXD11P31277 338 aaPredicted RBP21.08■□□□□ 0.97
CCDC144NL-203ENST00000539484 PPP4R3CPQ6ZMV5 832 aa21.08■□□□□ 0.97
CCDC144NL-203ENST00000539484 RNF39Q9H2S5 420 aa21.06■□□□□ 0.96
CCDC144NL-203ENST00000539484 CNKSR2Q8WXI2 1034 aa20.82■□□□□ 0.92
CCDC144NL-203ENST00000539484 RNF216Q9NWF9 866 aaPredicted RBP20.78■□□□□ 0.92
CCDC144NL-203ENST00000539484 C1QBPQ07021 282 aaKnown RBP20.75■□□□□ 0.91
CCDC144NL-203ENST00000539484 DNAJC5BQ9UF47 199 aa20.46■□□□□ 0.87
CCDC144NL-203ENST00000539484 ABCC9O60706 1549 aa20.27■□□□□ 0.83
CCDC144NL-203ENST00000539484 CCDC180Q9P1Z9 1646 aa20.26■□□□□ 0.83
CCDC144NL-203ENST00000539484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.15■□□□□ 0.822e-7■■□□□ 13.7
CCDC144NL-203ENST00000539484 NCBP3Q53F19 620 aaKnown RBP20.12■□□□□ 0.81
CCDC144NL-203ENST00000539484 NPM3O75607 178 aaKnown RBP19.77■□□□□ 0.76
CCDC144NL-203ENST00000539484 POTEHQ6S545 545 aa19.64■□□□□ 0.73
CCDC144NL-203ENST00000539484 U3KPZ7 1027 aaPredicted RBP19.59■□□□□ 0.73
CCDC144NL-203ENST00000539484 CAPN15O75808 1086 aa19.55■□□□□ 0.72
CCDC144NL-203ENST00000539484 DSG3P32926 999 aa19.53■□□□□ 0.72
CCDC144NL-203ENST00000539484 SPINK5Q9NQ38 1064 aaPredicted RBP19.52■□□□□ 0.72
CCDC144NL-203ENST00000539484 RB1CC1Q8TDY2 1594 aa19.31■□□□□ 0.68
CCDC144NL-203ENST00000539484 NACADO15069 1562 aa19.15■□□□□ 0.66
CCDC144NL-203ENST00000539484 DCAF8L2P0C7V8 631 aa19.09■□□□□ 0.65
CCDC144NL-203ENST00000539484 TRHP20396 242 aaPredicted RBP19.09■□□□□ 0.65
CCDC144NL-203ENST00000539484 APLP2Q06481 763 aa19.05■□□□□ 0.64
CCDC144NL-203ENST00000539484 SLC4A2P04920 1241 aa19.03■□□□□ 0.64
CCDC144NL-203ENST00000539484 ABCB7O75027 752 aa19.02■□□□□ 0.64
CCDC144NL-203ENST00000539484 ZNF219Q9P2Y4 722 aaPredicted RBP19.01■□□□□ 0.63
CCDC144NL-203ENST00000539484 UNC13AQ9UPW8 1703 aa18.9■□□□□ 0.62
CCDC144NL-203ENST00000539484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.88■□□□□ 0.61
CCDC144NL-203ENST00000539484 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
CCDC144NL-203ENST00000539484 KCNA4P22459 653 aa18.86■□□□□ 0.61
CCDC144NL-203ENST00000539484 PABPN1Q86U42 306 aaKnown RBP eCLIP18.85■□□□□ 0.61
CCDC144NL-203ENST00000539484 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
CCDC144NL-203ENST00000539484 SAMD1Q6SPF0 538 aaPredicted RBP18.73■□□□□ 0.59
CCDC144NL-203ENST00000539484 RBM42Q9BTD8 480 aaKnown RBP18.68■□□□□ 0.58
CCDC144NL-203ENST00000539484 BICRAQ9NZM4 1560 aa18.66■□□□□ 0.58
CCDC144NL-203ENST00000539484 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
CCDC144NL-203ENST00000539484 DCAF1Q9Y4B6 1507 aa18.55■□□□□ 0.56
CCDC144NL-203ENST00000539484 CHRDL2Q6WN34 429 aa18.5■□□□□ 0.55
CCDC144NL-203ENST00000539484 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.54
CCDC144NL-203ENST00000539484 SCRIBQ14160 1630 aa18.44■□□□□ 0.54
CCDC144NL-203ENST00000539484 POLA2Q14181 598 aa18.43■□□□□ 0.54
CCDC144NL-203ENST00000539484 CC2D2AQ9P2K1 1620 aa18.32■□□□□ 0.52
CCDC144NL-203ENST00000539484 MYCNP04198 464 aaPredicted RBP18.32■□□□□ 0.52
CCDC144NL-203ENST00000539484 CECR2Q9BXF3 1484 aa18.26■□□□□ 0.51
CCDC144NL-203ENST00000539484 EIF4G1Q04637 1599 aaKnown RBP18.25■□□□□ 0.51
CCDC144NL-203ENST00000539484 SP7Q8TDD2 431 aaPredicted RBP18.12■□□□□ 0.49
CCDC144NL-203ENST00000539484 AKT1S1Q96B36 256 aa18.12■□□□□ 0.49
CCDC144NL-203ENST00000539484 ZBTB12Q9Y330 459 aaPredicted RBP18■□□□□ 0.47
CCDC144NL-203ENST00000539484 REM2Q8IYK8 340 aaPredicted RBP17.95■□□□□ 0.46
CCDC144NL-203ENST00000539484 PIP4P2Q8N4L2 257 aa17.92■□□□□ 0.46
CCDC144NL-203ENST00000539484 ATF5Q9Y2D1 282 aaPredicted RBP17.92■□□□□ 0.46
CCDC144NL-203ENST00000539484 OSCARQ8IYS5 282 aa17.83■□□□□ 0.44
CCDC144NL-203ENST00000539484 HAX1O00165 279 aa17.82■□□□□ 0.44
CCDC144NL-203ENST00000539484 FOXD4L1Q9NU39 408 aa17.8■□□□□ 0.44
CCDC144NL-203ENST00000539484 PITPNM1O00562 1244 aa17.74■□□□□ 0.43
CCDC144NL-203ENST00000539484 FXR2P51116 673 aaKnown RBP eCLIP17.71■□□□□ 0.43
CCDC144NL-203ENST00000539484 SLC4A1APQ9BWU0 796 aaKnown RBP17.71■□□□□ 0.43
CCDC144NL-203ENST00000539484 NCAPD3P42695 1498 aa17.62■□□□□ 0.41
CCDC144NL-203ENST00000539484 SMARCA4P51532 1647 aa17.58■□□□□ 0.4
CCDC144NL-203ENST00000539484 SMARCA2P51531 1590 aa17.57■□□□□ 0.4
CCDC144NL-203ENST00000539484 ERCC6Q03468 1493 aa17.56■□□□□ 0.4
CCDC144NL-203ENST00000539484 ATAD2BQ9ULI0 1458 aa17.56■□□□□ 0.4
CCDC144NL-203ENST00000539484 DNAJC5Q9H3Z4 198 aa17.52■□□□□ 0.4
CCDC144NL-203ENST00000539484 HMGXB3Q12766 1538 aa17.52■□□□□ 0.39
CCDC144NL-203ENST00000539484 CUX2O14529 1486 aa17.51■□□□□ 0.39
CCDC144NL-203ENST00000539484 BAZ1AQ9NRL2 1556 aaPredicted RBP17.49■□□□□ 0.39
CCDC144NL-203ENST00000539484 EVX2Q03828 476 aa17.48■□□□□ 0.39
CCDC144NL-203ENST00000539484 BAZ1BQ9UIG0 1483 aaKnown RBP17.44■□□□□ 0.38
CCDC144NL-203ENST00000539484 SPDYE2BA6NHP3 402 aa17.39■□□□□ 0.37
CCDC144NL-203ENST00000539484 SPDYE6P0CI01 402 aa17.39■□□□□ 0.37
CCDC144NL-203ENST00000539484 SPDYE2Q495Y8 402 aa17.39■□□□□ 0.37
CCDC144NL-203ENST00000539484 PEG3Q9GZU2 1588 aa17.36■□□□□ 0.37
CCDC144NL-203ENST00000539484 NESP48681 1621 aa17.36■□□□□ 0.37
CCDC144NL-203ENST00000539484 FBLN2P98095 1184 aa17.33■□□□□ 0.36
CCDC144NL-203ENST00000539484 ATXN8OSP0DMR3 200 aa17.32■□□□□ 0.36
CCDC144NL-203ENST00000539484 PRKAR2AP13861 404 aaKnown RBP17.31■□□□□ 0.36
CCDC144NL-203ENST00000539484 ZBTB22O15209 634 aa17.3■□□□□ 0.36
CCDC144NL-203ENST00000539484 MROH2BQ7Z745 1585 aa17.3■□□□□ 0.36
CCDC144NL-203ENST00000539484 LAMC3Q9Y6N6 1575 aa17.3■□□□□ 0.36
CCDC144NL-203ENST00000539484 CLEC11AQ9Y240 323 aa17.28■□□□□ 0.36
CCDC144NL-203ENST00000539484 SPDYE1Q8NFV5 336 aaPredicted RBP17.25■□□□□ 0.35
CCDC144NL-203ENST00000539484 THOC2Q8NI27 1593 aaKnown RBP17.22■□□□□ 0.35
CCDC144NL-203ENST00000539484 KIF21AQ7Z4S6 1674 aa17.22■□□□□ 0.35
CCDC144NL-203ENST00000539484 PDS5BQ9NTI5 1447 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms