RNA–Protein interactions for RNA: ENST00000538439.1

NPIPB3-209, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-209ENST00000538439 CHIC1Q5VXU3 224 aa27.59■■■□□ 2.01
NPIPB3-209ENST00000538439 AEBP2Q6ZN18 517 aaPredicted RBP27.43■■□□□ 1.98
NPIPB3-209ENST00000538439 PHF23Q9BUL5 403 aaPredicted RBP24.28■■□□□ 1.48
NPIPB3-209ENST00000538439 SENP3Q9H4L4 574 aaPredicted RBP23.26■■□□□ 1.31
NPIPB3-209ENST00000538439 NISCHQ9Y2I1 1504 aa23.2■■□□□ 1.3
NPIPB3-209ENST00000538439 PLPPR3Q6T4P5 718 aa22.78■■□□□ 1.24
NPIPB3-209ENST00000538439 FOXD1Q16676 465 aa21.42■■□□□ 1.02
NPIPB3-209ENST00000538439 ADRA2BP18089 450 aa21.21■□□□□ 0.99
NPIPB3-209ENST00000538439 PPP6R1Q9UPN7 881 aa21.16■□□□□ 0.98
NPIPB3-209ENST00000538439 KCNA4P22459 653 aa20.47■□□□□ 0.87
NPIPB3-209ENST00000538439 PIAS4Q8N2W9 510 aaPredicted RBP20.44■□□□□ 0.86
NPIPB3-209ENST00000538439 CCDC180Q9P1Z9 1646 aa20.36■□□□□ 0.85
NPIPB3-209ENST00000538439 ABCC9O60706 1549 aa20.32■□□□□ 0.84
NPIPB3-209ENST00000538439 PPP4R3CPQ6ZMV5 832 aa20.13■□□□□ 0.81
NPIPB3-209ENST00000538439 EHMT2Q96KQ7 1210 aa19.95■□□□□ 0.78
NPIPB3-209ENST00000538439 NCBP3Q53F19 620 aaKnown RBP19.88■□□□□ 0.77
NPIPB3-209ENST00000538439 DNAJC5BQ9UF47 199 aa19.76■□□□□ 0.75
NPIPB3-209ENST00000538439 SLC4A1APQ9BWU0 796 aaKnown RBP19.68■□□□□ 0.74
NPIPB3-209ENST00000538439 MSH5O43196 834 aa19.55■□□□□ 0.72
NPIPB3-209ENST00000538439 NPM3O75607 178 aaKnown RBP19.52■□□□□ 0.72
NPIPB3-209ENST00000538439 SCAF1Q9H7N4 1312 aaKnown RBP19.51■□□□□ 0.71
NPIPB3-209ENST00000538439 CNKSR2Q8WXI2 1034 aa19.43■□□□□ 0.7
NPIPB3-209ENST00000538439 ZCCHC6Q5VYS8 1495 aaKnown RBP19.42■□□□□ 0.7
NPIPB3-209ENST00000538439 CSRNP3Q8WYN3 585 aa19.35■□□□□ 0.69
NPIPB3-209ENST00000538439 DCAF8L2P0C7V8 631 aa19.31■□□□□ 0.68
NPIPB3-209ENST00000538439 DCAF1Q9Y4B6 1507 aa19.21■□□□□ 0.67
NPIPB3-209ENST00000538439 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
NPIPB3-209ENST00000538439 NACADO15069 1562 aa19.06■□□□□ 0.64
NPIPB3-209ENST00000538439 RB1CC1Q8TDY2 1594 aa19.05■□□□□ 0.64
NPIPB3-209ENST00000538439 MAPK8IP2Q13387 824 aaPredicted RBP18.99■□□□□ 0.63
NPIPB3-209ENST00000538439 RNF216Q9NWF9 866 aaPredicted RBP18.86■□□□□ 0.61
NPIPB3-209ENST00000538439 PABPN1Q86U42 306 aaKnown RBP eCLIP18.84■□□□□ 0.61
NPIPB3-209ENST00000538439 ZBTB22O15209 634 aa18.83■□□□□ 0.6
NPIPB3-209ENST00000538439 BICRAQ9NZM4 1560 aa18.72■□□□□ 0.59
NPIPB3-209ENST00000538439 SHROOM4Q9ULL8 1493 aa18.71■□□□□ 0.59
NPIPB3-209ENST00000538439 UNC13AQ9UPW8 1703 aa18.71■□□□□ 0.59
NPIPB3-209ENST00000538439 FOXD4L1Q9NU39 408 aa18.69■□□□□ 0.58
NPIPB3-209ENST00000538439 DMRT2Q9Y5R5 561 aa18.66■□□□□ 0.58
NPIPB3-209ENST00000538439 SCRIBQ14160 1630 aa18.65■□□□□ 0.58
NPIPB3-209ENST00000538439 HOXD11P31277 338 aaPredicted RBP18.57■□□□□ 0.56
NPIPB3-209ENST00000538439 DNAJC5Q9H3Z4 198 aa18.4■□□□□ 0.54
NPIPB3-209ENST00000538439 CECR2Q9BXF3 1484 aa18.35■□□□□ 0.53
NPIPB3-209ENST00000538439 CC2D2AQ9P2K1 1620 aa18.34■□□□□ 0.53
NPIPB3-209ENST00000538439 SLC4A2P04920 1241 aa18.22■□□□□ 0.51
NPIPB3-209ENST00000538439 EIF4G1Q04637 1599 aaKnown RBP18.19■□□□□ 0.5
NPIPB3-209ENST00000538439 MYCNP04198 464 aaPredicted RBP18.07■□□□□ 0.48
NPIPB3-209ENST00000538439 ATXN8OSP0DMR3 200 aa18■□□□□ 0.47
NPIPB3-209ENST00000538439 BAZ1AQ9NRL2 1556 aaPredicted RBP17.96■□□□□ 0.47
NPIPB3-209ENST00000538439 SUPT5HO00267 1087 aaKnown RBP17.91■□□□□ 0.46
NPIPB3-209ENST00000538439 MROH2BQ7Z745 1585 aa17.89■□□□□ 0.45
NPIPB3-209ENST00000538439 RSF1Q96T23 1441 aaPredicted RBP17.89■□□□□ 0.45
NPIPB3-209ENST00000538439 SMARCA4P51532 1647 aa17.88■□□□□ 0.45
NPIPB3-209ENST00000538439 DCAF8L1A6NGE4 600 aa17.82■□□□□ 0.44
NPIPB3-209ENST00000538439 CUX2O14529 1486 aa17.73■□□□□ 0.43
NPIPB3-209ENST00000538439 WIZO95785 1651 aa17.71■□□□□ 0.43
NPIPB3-209ENST00000538439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.71■□□□□ 0.43
NPIPB3-209ENST00000538439 SMARCA2P51531 1590 aa17.69■□□□□ 0.42
NPIPB3-209ENST00000538439 PEG3Q9GZU2 1588 aa17.68■□□□□ 0.42
NPIPB3-209ENST00000538439 ATAD2BQ9ULI0 1458 aa17.68■□□□□ 0.42
NPIPB3-209ENST00000538439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.61■□□□□ 0.41
NPIPB3-209ENST00000538439 HNRNPUL2Q1KMD3 747 aaKnown RBP17.61■□□□□ 0.41
NPIPB3-209ENST00000538439 NCAPD3P42695 1498 aa17.59■□□□□ 0.41
NPIPB3-209ENST00000538439 BAZ1BQ9UIG0 1483 aaKnown RBP17.58■□□□□ 0.41
NPIPB3-209ENST00000538439 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
NPIPB3-209ENST00000538439 SAMD1Q6SPF0 538 aaPredicted RBP17.55■□□□□ 0.4
NPIPB3-209ENST00000538439 HMGXB3Q12766 1538 aa17.53■□□□□ 0.4
NPIPB3-209ENST00000538439 FKBP8Q14318 412 aa17.49■□□□□ 0.39
NPIPB3-209ENST00000538439 U3KPZ7 1027 aaPredicted RBP17.47■□□□□ 0.39
NPIPB3-209ENST00000538439 ERCC6Q03468 1493 aa17.44■□□□□ 0.38
NPIPB3-209ENST00000538439 ATF5Q9Y2D1 282 aaPredicted RBP17.43■□□□□ 0.38
NPIPB3-209ENST00000538439 NESP48681 1621 aa17.38■□□□□ 0.37
NPIPB3-209ENST00000538439 CCDC88BA6NC98 1476 aa17.37■□□□□ 0.37
NPIPB3-209ENST00000538439 AMER1Q5JTC6 1135 aaPredicted RBP17.31■□□□□ 0.36
NPIPB3-209ENST00000538439 THOC2Q8NI27 1593 aaKnown RBP17.3■□□□□ 0.36
NPIPB3-209ENST00000538439 APLP2Q06481 763 aa17.28■□□□□ 0.36
NPIPB3-209ENST00000538439 RTN4Q9NQC3 1192 aaKnown RBP17.2■□□□□ 0.34
NPIPB3-209ENST00000538439 TRIM41Q8WV44 630 aa17.18■□□□□ 0.34
NPIPB3-209ENST00000538439 CADPSQ9ULU8 1353 aa17.14■□□□□ 0.33
NPIPB3-209ENST00000538439 ZNF219Q9P2Y4 722 aaPredicted RBP17.13■□□□□ 0.33
NPIPB3-209ENST00000538439 CFTRP13569 1480 aa17.12■□□□□ 0.33
NPIPB3-209ENST00000538439 LAMC3Q9Y6N6 1575 aa17.08■□□□□ 0.32
NPIPB3-209ENST00000538439 KIF21AQ7Z4S6 1674 aa17.04■□□□□ 0.32
NPIPB3-209ENST00000538439 PRDM2Q13029 1718 aa16.96■□□□□ 0.31
NPIPB3-209ENST00000538439 PDS5BQ9NTI5 1447 aa16.96■□□□□ 0.3
NPIPB3-209ENST00000538439 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
NPIPB3-209ENST00000538439 WDR62O43379 1518 aa16.91■□□□□ 0.3
NPIPB3-209ENST00000538439 MRC2Q9UBG0 1479 aa16.88■□□□□ 0.29
NPIPB3-209ENST00000538439 ABCC8Q09428 1581 aa16.88■□□□□ 0.29
NPIPB3-209ENST00000538439 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
NPIPB3-209ENST00000538439 CEP164Q9UPV0 1460 aa16.86■□□□□ 0.29
NPIPB3-209ENST00000538439 SLC24A1O60721 1099 aa16.82■□□□□ 0.28
NPIPB3-209ENST00000538439 RNF39Q9H2S5 420 aa16.78■□□□□ 0.28
NPIPB3-209ENST00000538439 SPDYE4A6NLX3 237 aa16.77■□□□□ 0.28
NPIPB3-209ENST00000538439 TRHP20396 242 aaPredicted RBP16.77■□□□□ 0.28
NPIPB3-209ENST00000538439 FBLN2P98095 1184 aa16.77■□□□□ 0.28
NPIPB3-209ENST00000538439 OSCARQ8IYS5 282 aa16.77■□□□□ 0.28
NPIPB3-209ENST00000538439 SYNJ1O43426 1573 aa16.75■□□□□ 0.27
NPIPB3-209ENST00000538439 CUX1P39880 1505 aa16.75■□□□□ 0.27
NPIPB3-209ENST00000538439 SPINK5Q9NQ38 1064 aaPredicted RBP16.74■□□□□ 0.27
NPIPB3-209ENST00000538439 TOP2BQ02880 1626 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms