RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 NISCHQ9Y2I1 1504 aa28.74■■■□□ 2.19
SYNE1-236ENST00000537750 SHROOM4Q9ULL8 1493 aa25.45■■□□□ 1.66
SYNE1-236ENST00000537750 SUPT5HO00267 1087 aaKnown RBP25.29■■□□□ 1.64
SYNE1-236ENST00000537750 HRCP23327 699 aa25.22■■□□□ 1.63
SYNE1-236ENST00000537750 MYO15BQ96JP2 1530 aa24.89■■□□□ 1.57
SYNE1-236ENST00000537750 PCGF6Q9BYE7 350 aa24.88■■□□□ 1.57
SYNE1-236ENST00000537750 PPARGC1BQ86YN6 1023 aaKnown RBP24.83■■□□□ 1.57
SYNE1-236ENST00000537750 CHIC1Q5VXU3 224 aa24.77■■□□□ 1.56
SYNE1-236ENST00000537750 ZCCHC6Q5VYS8 1495 aaKnown RBP24.4■■□□□ 1.5
SYNE1-236ENST00000537750 LOC105371045A0A1W2PR82 267 aa24.26■■□□□ 1.47
SYNE1-236ENST00000537750 DCAF1Q9Y4B6 1507 aa24.19■■□□□ 1.46
SYNE1-236ENST00000537750 DCAF8L2P0C7V8 631 aa24.11■■□□□ 1.45
SYNE1-236ENST00000537750 TRIM26Q12899 539 aaPredicted RBP24.04■■□□□ 1.44
SYNE1-236ENST00000537750 CCDC180Q9P1Z9 1646 aa23.96■■□□□ 1.43
SYNE1-236ENST00000537750 PELP1Q8IZL8 1130 aaKnown RBP23.91■■□□□ 1.42
SYNE1-236ENST00000537750 SCAF1Q9H7N4 1312 aaKnown RBP23.8■■□□□ 1.4
SYNE1-236ENST00000537750 ZEB1P37275 1124 aaPredicted RBP23.71■■□□□ 1.39
SYNE1-236ENST00000537750 FAM9AQ8IZU1 332 aaPredicted RBP23.42■■□□□ 1.34
SYNE1-236ENST00000537750 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
SYNE1-236ENST00000537750 TRIM41Q8WV44 630 aa23.35■■□□□ 1.33
SYNE1-236ENST00000537750 ACIN1Q9UKV3 1341 aaKnown RBP23.24■■□□□ 1.31
SYNE1-236ENST00000537750 NEUROD1Q13562 356 aa23.23■■□□□ 1.31
SYNE1-236ENST00000537750 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.14■■□□□ 1.29
SYNE1-236ENST00000537750 ABCC9O60706 1549 aa23.11■■□□□ 1.29
SYNE1-236ENST00000537750 RSF1Q96T23 1441 aaPredicted RBP23.09■■□□□ 1.29
SYNE1-236ENST00000537750 GTF3C3Q9Y5Q9 886 aa23.08■■□□□ 1.29
SYNE1-236ENST00000537750 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
SYNE1-236ENST00000537750 RB1CC1Q8TDY2 1594 aa22.97■■□□□ 1.27
SYNE1-236ENST00000537750 DIEXFQ68CQ4 756 aaKnown RBP22.97■■□□□ 1.27
SYNE1-236ENST00000537750 CENPBP07199 599 aaPredicted RBP22.92■■□□□ 1.26
SYNE1-236ENST00000537750 MYT1Q01538 1121 aa22.85■■□□□ 1.25
SYNE1-236ENST00000537750 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
SYNE1-236ENST00000537750 TTBK1Q5TCY1 1321 aaPredicted RBP22.77■■□□□ 1.24
SYNE1-236ENST00000537750 YTHDC1Q96MU7 727 aaKnown RBP22.65■■□□□ 1.22
SYNE1-236ENST00000537750 ZNF316A6NFI3 1004 aaPredicted RBP22.55■■□□□ 1.2
SYNE1-236ENST00000537750 CECR2Q9BXF3 1484 aa22.54■■□□□ 1.2
SYNE1-236ENST00000537750 MROH2BQ7Z745 1585 aa22.46■■□□□ 1.19
SYNE1-236ENST00000537750 MIER1Q8N108 512 aa22.43■■□□□ 1.18
SYNE1-236ENST00000537750 WIZO95785 1651 aa22.37■■□□□ 1.17
SYNE1-236ENST00000537750 WRNQ14191 1432 aaPredicted RBP eCLIP22.37■■□□□ 1.17
SYNE1-236ENST00000537750 CEP162Q5TB80 1403 aa22.34■■□□□ 1.17
SYNE1-236ENST00000537750 CCDC88BA6NC98 1476 aa22.25■■□□□ 1.15
SYNE1-236ENST00000537750 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
SYNE1-236ENST00000537750 EIF4G1Q04637 1599 aaKnown RBP22.22■■□□□ 1.15
SYNE1-236ENST00000537750 HNRNPUL2Q1KMD3 747 aaKnown RBP22.21■■□□□ 1.15
SYNE1-236ENST00000537750 UBTFP17480 764 aaKnown RBP22.19■■□□□ 1.14
SYNE1-236ENST00000537750 SOGA1O94964 1423 aa22.18■■□□□ 1.14
SYNE1-236ENST00000537750 TNIKQ9UKE5 1360 aa22.18■■□□□ 1.14
SYNE1-236ENST00000537750 BAZ1AQ9NRL2 1556 aaPredicted RBP22.14■■□□□ 1.14
SYNE1-236ENST00000537750 NACADO15069 1562 aa22.09■■□□□ 1.13
SYNE1-236ENST00000537750 CSRNP3Q8WYN3 585 aa22.09■■□□□ 1.13
SYNE1-236ENST00000537750 RUSC2Q8N2Y8 1516 aa22.08■■□□□ 1.12
SYNE1-236ENST00000537750 SUPT16HQ9Y5B9 1047 aaKnown RBP21.99■■□□□ 1.11
SYNE1-236ENST00000537750 GOLGA3Q08378 1498 aa21.9■■□□□ 1.1
SYNE1-236ENST00000537750 TOP2AP11388 1531 aaKnown RBP21.9■■□□□ 1.1
SYNE1-236ENST00000537750 EEA1Q15075 1411 aa21.89■■□□□ 1.09
SYNE1-236ENST00000537750 TSHZ2Q9NRE2 1034 aa21.85■■□□□ 1.09
SYNE1-236ENST00000537750 SMARCA2P51531 1590 aa21.85■■□□□ 1.09
SYNE1-236ENST00000537750 RANGAP1P46060 587 aaPredicted RBP21.8■■□□□ 1.08
SYNE1-236ENST00000537750 CLSPNQ9HAW4 1339 aa21.79■■□□□ 1.08
SYNE1-236ENST00000537750 APLP2Q06481 763 aa21.77■■□□□ 1.08
SYNE1-236ENST00000537750 CLIP1P30622 1438 aa21.77■■□□□ 1.08
SYNE1-236ENST00000537750 ANP32EQ9BTT0 268 aa21.76■■□□□ 1.07
SYNE1-236ENST00000537750 SMARCA4P51532 1647 aa21.73■■□□□ 1.07
SYNE1-236ENST00000537750 VPS8Q8N3P4 1428 aa21.7■■□□□ 1.07
SYNE1-236ENST00000537750 CEP164Q9UPV0 1460 aa21.68■■□□□ 1.06
SYNE1-236ENST00000537750 DHX57Q6P158 1386 aaKnown RBP21.68■■□□□ 1.06
SYNE1-236ENST00000537750 KCNH8Q96L42 1107 aa21.65■■□□□ 1.06
SYNE1-236ENST00000537750 BCANQ96GW7 911 aa21.63■■□□□ 1.05
SYNE1-236ENST00000537750 BCL11AQ9H165 835 aa21.61■■□□□ 1.05
SYNE1-236ENST00000537750 KIF21BO75037 1637 aa21.57■■□□□ 1.04
SYNE1-236ENST00000537750 RAPGEF2Q9Y4G8 1499 aa21.56■■□□□ 1.04
SYNE1-236ENST00000537750 SYNJ1O43426 1573 aa21.52■■□□□ 1.04
SYNE1-236ENST00000537750 KANK4Q5T7N3 995 aaPredicted RBP21.49■■□□□ 1.03
SYNE1-236ENST00000537750 FKBP8Q14318 412 aa21.48■■□□□ 1.03
SYNE1-236ENST00000537750 BAZ1BQ9UIG0 1483 aaKnown RBP21.45■■□□□ 1.02
SYNE1-236ENST00000537750 ITGAEP38570 1179 aa21.4■■□□□ 1.02
SYNE1-236ENST00000537750 RBM19Q9Y4C8 960 aaKnown RBP21.36■■□□□ 1.01
SYNE1-236ENST00000537750 DDX10Q13206 875 aaKnown RBP21.34■■□□□ 1.01
SYNE1-236ENST00000537750 UNC13AQ9UPW8 1703 aa21.33■■□□□ 1
SYNE1-236ENST00000537750 ARAP1Q96P48 1450 aa21.3■■□□□ 1
SYNE1-236ENST00000537750 PABPN1Q86U42 306 aaKnown RBP eCLIP21.29■■□□□ 1
SYNE1-236ENST00000537750 RRBP1Q9P2E9 1410 aaKnown RBP21.28■■□□□ 1
SYNE1-236ENST00000537750 TRIM52Q96A61 297 aa21.25■□□□□ 0.99
SYNE1-236ENST00000537750 NEFLP07196 543 aa21.24■□□□□ 0.99
SYNE1-236ENST00000537750 CCNB3Q8WWL7 1395 aa21.23■□□□□ 0.99
SYNE1-236ENST00000537750 CUX2O14529 1486 aa21.21■□□□□ 0.99
SYNE1-236ENST00000537750 HIRIP3Q9BW71 556 aaPredicted RBP21.21■□□□□ 0.99
SYNE1-236ENST00000537750 PEG3Q9GZU2 1588 aa21.21■□□□□ 0.99
SYNE1-236ENST00000537750 RAB3GAP2Q9H2M9 1393 aa21.2■□□□□ 0.98
SYNE1-236ENST00000537750 SIN3AQ96ST3 1273 aa21.19■□□□□ 0.98
SYNE1-236ENST00000537750 MSH5O43196 834 aa21.17■□□□□ 0.98
SYNE1-236ENST00000537750 MAPKBP1O60336 1514 aa21.17■□□□□ 0.98
SYNE1-236ENST00000537750 PPP1R15AO75807 674 aaPredicted RBP21.14■□□□□ 0.97
SYNE1-236ENST00000537750 PRXQ9BXM0 1461 aa21.13■□□□□ 0.97
SYNE1-236ENST00000537750 WDR97A6NE52 1622 aa21.13■□□□□ 0.97
SYNE1-236ENST00000537750 TOP2BQ02880 1626 aa21.09■□□□□ 0.97
SYNE1-236ENST00000537750 ERICH3Q5RHP9 1530 aa21.09■□□□□ 0.97
SYNE1-236ENST00000537750 ATAD2BQ9ULI0 1458 aa21.09■□□□□ 0.97
SYNE1-236ENST00000537750 BICRAQ9NZM4 1560 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms