RNA–Protein interactions for RNA: ENST00000536688.5

RFX4-204, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 2,186 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-204ENST00000536688 NISCHQ9Y2I1 1504 aa18.17■□□□□ 0.5
RFX4-204ENST00000536688 PELP1Q8IZL8 1130 aaKnown RBP17.74■□□□□ 0.43
RFX4-204ENST00000536688 HRCP23327 699 aa17.35■□□□□ 0.37
RFX4-204ENST00000536688 MYT1Q01538 1121 aa17.32■□□□□ 0.36
RFX4-204ENST00000536688 PPARGC1BQ86YN6 1023 aaKnown RBP16.6■□□□□ 0.25
RFX4-204ENST00000536688 SCAF1Q9H7N4 1312 aaKnown RBP16.53■□□□□ 0.24
RFX4-204ENST00000536688 PCGF6Q9BYE7 350 aa16.51■□□□□ 0.23
RFX4-204ENST00000536688 TTBK1Q5TCY1 1321 aaPredicted RBP16.48■□□□□ 0.23
RFX4-204ENST00000536688 DCAF1Q9Y4B6 1507 aa16.39■□□□□ 0.21
RFX4-204ENST00000536688 MYO15BQ96JP2 1530 aa16.35■□□□□ 0.21
RFX4-204ENST00000536688 ZEB1P37275 1124 aaPredicted RBP16.33■□□□□ 0.2
RFX4-204ENST00000536688 CCDC180Q9P1Z9 1646 aa16.27■□□□□ 0.2
RFX4-204ENST00000536688 TRIM26Q12899 539 aaPredicted RBP16.12■□□□□ 0.17
RFX4-204ENST00000536688 CHIC1Q5VXU3 224 aa16.1■□□□□ 0.17
RFX4-204ENST00000536688 ACIN1Q9UKV3 1341 aaKnown RBP16.1■□□□□ 0.17
RFX4-204ENST00000536688 SUPT5HO00267 1087 aaKnown RBP15.94■□□□□ 0.14
RFX4-204ENST00000536688 CENPBP07199 599 aaPredicted RBP15.9■□□□□ 0.14
RFX4-204ENST00000536688 NEUROD1Q13562 356 aa15.89■□□□□ 0.13
RFX4-204ENST00000536688 GTF3C3Q9Y5Q9 886 aa15.86■□□□□ 0.13
RFX4-204ENST00000536688 SHROOM4Q9ULL8 1493 aa15.75■□□□□ 0.11
RFX4-204ENST00000536688 ABCC9O60706 1549 aa15.73■□□□□ 0.11
RFX4-204ENST00000536688 BCL11AQ9H165 835 aa15.69■□□□□ 0.1
RFX4-204ENST00000536688 LOC105371045A0A1W2PR82 267 aa15.55■□□□□ 0.08
RFX4-204ENST00000536688 DIEXFQ68CQ4 756 aaKnown RBP15.51■□□□□ 0.07
RFX4-204ENST00000536688 FAM9AQ8IZU1 332 aaPredicted RBP15.48■□□□□ 0.07
RFX4-204ENST00000536688 ANP32EQ9BTT0 268 aa15.48■□□□□ 0.07
RFX4-204ENST00000536688 CLSPNQ9HAW4 1339 aa15.44■□□□□ 0.06
RFX4-204ENST00000536688 PRKCSHP14314 528 aaPredicted RBP15.41■□□□□ 0.06
RFX4-204ENST00000536688 ZCCHC6Q5VYS8 1495 aaKnown RBP15.4■□□□□ 0.06
RFX4-204ENST00000536688 ERICH6Q7L0X2 663 aa15.39■□□□□ 0.05
RFX4-204ENST00000536688 DNAJC5BQ9UF47 199 aa15.35■□□□□ 0.05
RFX4-204ENST00000536688 TRIM41Q8WV44 630 aa15.34■□□□□ 0.05
RFX4-204ENST00000536688 DNAJC5Q9H3Z4 198 aa15.3■□□□□ 0.04
RFX4-204ENST00000536688 DCAF8L2P0C7V8 631 aa15.21■□□□□ 0.02
RFX4-204ENST00000536688 CCER1Q8TC90 406 aaPredicted RBP15.21■□□□□ 0.02
RFX4-204ENST00000536688 APLP2Q06481 763 aa15.18■□□□□ 0.02
RFX4-204ENST00000536688 ZNF316A6NFI3 1004 aaPredicted RBP15.17■□□□□ 0.02
RFX4-204ENST00000536688 CSRNP3Q8WYN3 585 aa15.17■□□□□ 0.02
RFX4-204ENST00000536688 TSHZ2Q9NRE2 1034 aa15.13■□□□□ 0.01
RFX4-204ENST00000536688 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.11■□□□□ 0.01
RFX4-204ENST00000536688 SUPT16HQ9Y5B9 1047 aaKnown RBP15.07■□□□□ 0
RFX4-204ENST00000536688 YTHDC1Q96MU7 727 aaKnown RBP15.04■□□□□ -0
RFX4-204ENST00000536688 RB1CC1Q8TDY2 1594 aa15.01□□□□□ -0.01
RFX4-204ENST00000536688 MIER1Q8N108 512 aa15□□□□□ -0.01
RFX4-204ENST00000536688 NACADO15069 1562 aa14.97□□□□□ -0.01
RFX4-204ENST00000536688 MYT1LQ9UL68 1186 aa14.92□□□□□ -0.02
RFX4-204ENST00000536688 WRNQ14191 1432 aaPredicted RBP eCLIP14.83□□□□□ -0.03
RFX4-204ENST00000536688 UNC13AQ9UPW8 1703 aa14.74□□□□□ -0.05
RFX4-204ENST00000536688 PABPN1Q86U42 306 aaKnown RBP eCLIP14.73□□□□□ -0.05
RFX4-204ENST00000536688 RBM19Q9Y4C8 960 aaKnown RBP14.73□□□□□ -0.05
RFX4-204ENST00000536688 ERICH6BQ5W0A0 696 aa14.7□□□□□ -0.06
RFX4-204ENST00000536688 FANCIQ9NVI1 1328 aa14.68□□□□□ -0.06
RFX4-204ENST00000536688 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
RFX4-204ENST00000536688 BICRAQ9NZM4 1560 aa14.62□□□□□ -0.07
RFX4-204ENST00000536688 MSH5O43196 834 aa14.58□□□□□ -0.07
RFX4-204ENST00000536688 UBE2Q2Q8WVN8 375 aa14.57□□□□□ -0.08
RFX4-204ENST00000536688 RSF1Q96T23 1441 aaPredicted RBP14.54□□□□□ -0.08
RFX4-204ENST00000536688 ANO8Q9HCE9 1232 aaPredicted RBP14.54□□□□□ -0.08
RFX4-204ENST00000536688 DEKP35659 375 aaKnown RBP14.52□□□□□ -0.08
RFX4-204ENST00000536688 FKBP8Q14318 412 aa14.48□□□□□ -0.09
RFX4-204ENST00000536688 NEFLP07196 543 aa14.47□□□□□ -0.09
RFX4-204ENST00000536688 CEP162Q5TB80 1403 aa14.44□□□□□ -0.1
RFX4-204ENST00000536688 TNIKQ9UKE5 1360 aa14.42□□□□□ -0.1
RFX4-204ENST00000536688 BCANQ96GW7 911 aa14.4□□□□□ -0.1
RFX4-204ENST00000536688 EHMT2Q96KQ7 1210 aa14.36□□□□□ -0.11
RFX4-204ENST00000536688 SALL2Q9Y467 1007 aaPredicted RBP14.36□□□□□ -0.11
RFX4-204ENST00000536688 CDK11AQ9UQ88 783 aaPredicted RBP14.33□□□□□ -0.11
RFX4-204ENST00000536688 EEA1Q15075 1411 aa14.28□□□□□ -0.12
RFX4-204ENST00000536688 EIF4G1Q04637 1599 aaKnown RBP14.26□□□□□ -0.13
RFX4-204ENST00000536688 DHX57Q6P158 1386 aaKnown RBP14.24□□□□□ -0.13
RFX4-204ENST00000536688 CCER2I3L3R5 266 aa14.23□□□□□ -0.13
RFX4-204ENST00000536688 HNRNPUL2Q1KMD3 747 aaKnown RBP14.22□□□□□ -0.13
RFX4-204ENST00000536688 ITGAEP38570 1179 aa14.22□□□□□ -0.13
RFX4-204ENST00000536688 NOP58Q9Y2X3 529 aaKnown RBP14.21□□□□□ -0.13
RFX4-204ENST00000536688 CECR2Q9BXF3 1484 aa14.2□□□□□ -0.14
RFX4-204ENST00000536688 CC2D2AQ9P2K1 1620 aa14.18□□□□□ -0.14
RFX4-204ENST00000536688 EIF5BO60841 1220 aaKnown RBP14.17□□□□□ -0.14
RFX4-204ENST00000536688 KCNH8Q96L42 1107 aa14.17□□□□□ -0.14
RFX4-204ENST00000536688 C11orf95C9JLR9 678 aaPredicted RBP14.15□□□□□ -0.14
RFX4-204ENST00000536688 CCDC136Q96JN2 1154 aa14.15□□□□□ -0.15
RFX4-204ENST00000536688 GOLGA3Q08378 1498 aa14.14□□□□□ -0.15
RFX4-204ENST00000536688 RTL5Q5HYW3 569 aaPredicted RBP14.13□□□□□ -0.15
RFX4-204ENST00000536688 MROH2BQ7Z745 1585 aa14.13□□□□□ -0.15
RFX4-204ENST00000536688 CUX2O14529 1486 aa14.11□□□□□ -0.15
RFX4-204ENST00000536688 PPP4R2Q9NY27 417 aa14.09□□□□□ -0.15
RFX4-204ENST00000536688 IL27Q8NEV9 243 aa14.09□□□□□ -0.15
RFX4-204ENST00000536688 PKNOX2Q96KN3 472 aa14.09□□□□□ -0.15
RFX4-204ENST00000536688 WASHC2AQ641Q2 1341 aa14.09□□□□□ -0.15
RFX4-204ENST00000536688 VPS8Q8N3P4 1428 aa14.08□□□□□ -0.16
RFX4-204ENST00000536688 WIZO95785 1651 aa14.08□□□□□ -0.16
RFX4-204ENST00000536688 USP35Q9P2H5 1018 aa14.06□□□□□ -0.16
RFX4-204ENST00000536688 NBR1Q14596 966 aa14.05□□□□□ -0.16
RFX4-204ENST00000536688 PPP1R15AO75807 674 aaPredicted RBP14.04□□□□□ -0.16
RFX4-204ENST00000536688 WASHC2CQ9Y4E1 1318 aa14.03□□□□□ -0.16
RFX4-204ENST00000536688 CCDC88BA6NC98 1476 aa14.03□□□□□ -0.16
RFX4-204ENST00000536688 ABCC8Q09428 1581 aa14.02□□□□□ -0.16
RFX4-204ENST00000536688 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.02□□□□□ -0.17
RFX4-204ENST00000536688 CLIP1P30622 1438 aa14.01□□□□□ -0.17
RFX4-204ENST00000536688 BAZ1AQ9NRL2 1556 aaPredicted RBP14.01□□□□□ -0.17
RFX4-204ENST00000536688 SLC24A1O60721 1099 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 226.7 ms