RNA–Protein interactions for RNA: ENST00000531429.1

SCUBE2-211, Transcript of signal peptide, CUB domain and EGF like domain containing 2, humanhuman

TSL 5

Gene SCUBE2, Length 514 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE2-211ENST00000531429 CHIC1Q5VXU3 224 aa22.33■■□□□ 1.17
SCUBE2-211ENST00000531429 AEBP2Q6ZN18 517 aaPredicted RBP22.08■■□□□ 1.13
SCUBE2-211ENST00000531429 PHF23Q9BUL5 403 aaPredicted RBP19.76■□□□□ 0.75
SCUBE2-211ENST00000531429 SENP3Q9H4L4 574 aaPredicted RBP18.53■□□□□ 0.56
SCUBE2-211ENST00000531429 PLPPR3Q6T4P5 718 aa18.46■□□□□ 0.55
SCUBE2-211ENST00000531429 ADRA2BP18089 450 aa17.34■□□□□ 0.37
SCUBE2-211ENST00000531429 NISCHQ9Y2I1 1504 aa17.27■□□□□ 0.36
SCUBE2-211ENST00000531429 PPP6R1Q9UPN7 881 aa17.16■□□□□ 0.34
SCUBE2-211ENST00000531429 FOXD1Q16676 465 aa17.14■□□□□ 0.33
SCUBE2-211ENST00000531429 KCNA4P22459 653 aa17.01■□□□□ 0.31
SCUBE2-211ENST00000531429 EHMT2Q96KQ7 1210 aa16.84■□□□□ 0.29
SCUBE2-211ENST00000531429 PPP4R3CPQ6ZMV5 832 aa16.4■□□□□ 0.22
SCUBE2-211ENST00000531429 PIAS4Q8N2W9 510 aaPredicted RBP16.36■□□□□ 0.21
SCUBE2-211ENST00000531429 SLC4A1APQ9BWU0 796 aaKnown RBP16.31■□□□□ 0.2
SCUBE2-211ENST00000531429 CSRNP3Q8WYN3 585 aa16.24■□□□□ 0.19
SCUBE2-211ENST00000531429 NCBP3Q53F19 620 aaKnown RBP16.16■□□□□ 0.18
SCUBE2-211ENST00000531429 NPM3O75607 178 aaKnown RBP16■□□□□ 0.15
SCUBE2-211ENST00000531429 CNKSR2Q8WXI2 1034 aa15.73■□□□□ 0.11
SCUBE2-211ENST00000531429 ZBTB22O15209 634 aa15.7■□□□□ 0.1
SCUBE2-211ENST00000531429 SCAF1Q9H7N4 1312 aaKnown RBP15.62■□□□□ 0.09
SCUBE2-211ENST00000531429 ABCC9O60706 1549 aa15.58■□□□□ 0.08
SCUBE2-211ENST00000531429 CCDC180Q9P1Z9 1646 aa15.47■□□□□ 0.07
SCUBE2-211ENST00000531429 MSH5O43196 834 aa15.42■□□□□ 0.06
SCUBE2-211ENST00000531429 FOXD4L1Q9NU39 408 aa15.38■□□□□ 0.05
SCUBE2-211ENST00000531429 DNAJC5BQ9UF47 199 aa15.37■□□□□ 0.05
SCUBE2-211ENST00000531429 MAPK8IP2Q13387 824 aaPredicted RBP15.34■□□□□ 0.05
SCUBE2-211ENST00000531429 RNF216Q9NWF9 866 aaPredicted RBP15.22■□□□□ 0.03
SCUBE2-211ENST00000531429 HOXD11P31277 338 aaPredicted RBP14.96□□□□□ -0.01
SCUBE2-211ENST00000531429 DMRT2Q9Y5R5 561 aa14.95□□□□□ -0.02
SCUBE2-211ENST00000531429 SLC4A2P04920 1241 aa14.92□□□□□ -0.02
SCUBE2-211ENST00000531429 RTN4Q9NQC3 1192 aaKnown RBP14.81□□□□□ -0.04
SCUBE2-211ENST00000531429 RB1CC1Q8TDY2 1594 aa14.77□□□□□ -0.05
SCUBE2-211ENST00000531429 AMER1Q5JTC6 1135 aaPredicted RBP14.76□□□□□ -0.05
SCUBE2-211ENST00000531429 MYCNP04198 464 aaPredicted RBP14.74□□□□□ -0.05
SCUBE2-211ENST00000531429 ATXN8OSP0DMR3 200 aa14.73□□□□□ -0.05
SCUBE2-211ENST00000531429 SLC24A1O60721 1099 aa14.71□□□□□ -0.05
SCUBE2-211ENST00000531429 DCAF8L2P0C7V8 631 aa14.69□□□□□ -0.06
SCUBE2-211ENST00000531429 NACADO15069 1562 aa14.64□□□□□ -0.07
SCUBE2-211ENST00000531429 FKBP8Q14318 412 aa14.62□□□□□ -0.07
SCUBE2-211ENST00000531429 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.09
SCUBE2-211ENST00000531429 UNC13AQ9UPW8 1703 aa14.4□□□□□ -0.1
SCUBE2-211ENST00000531429 MYO15BQ96JP2 1530 aa14.39□□□□□ -0.11
SCUBE2-211ENST00000531429 ATF5Q9Y2D1 282 aaPredicted RBP14.34□□□□□ -0.11
SCUBE2-211ENST00000531429 ZCCHC6Q5VYS8 1495 aaKnown RBP14.32□□□□□ -0.12
SCUBE2-211ENST00000531429 BICRAQ9NZM4 1560 aa14.32□□□□□ -0.12
SCUBE2-211ENST00000531429 DCAF8L1A6NGE4 600 aa14.24□□□□□ -0.13
SCUBE2-211ENST00000531429 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.24□□□□□ -0.13
SCUBE2-211ENST00000531429 DCAF1Q9Y4B6 1507 aa14.21□□□□□ -0.13
SCUBE2-211ENST00000531429 SCRIBQ14160 1630 aa14.19□□□□□ -0.14
SCUBE2-211ENST00000531429 SAMD1Q6SPF0 538 aaPredicted RBP14.17□□□□□ -0.14
SCUBE2-211ENST00000531429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.16□□□□□ -0.14
SCUBE2-211ENST00000531429 HNRNPUL2Q1KMD3 747 aaKnown RBP14.16□□□□□ -0.14
SCUBE2-211ENST00000531429 U3KPZ7 1027 aaPredicted RBP14.15□□□□□ -0.14
SCUBE2-211ENST00000531429 SHROOM4Q9ULL8 1493 aa14.09□□□□□ -0.15
SCUBE2-211ENST00000531429 CC2D2AQ9P2K1 1620 aa14.02□□□□□ -0.16
SCUBE2-211ENST00000531429 CECR2Q9BXF3 1484 aa14□□□□□ -0.17
SCUBE2-211ENST00000531429 EIF4G1Q04637 1599 aaKnown RBP13.99□□□□□ -0.17
SCUBE2-211ENST00000531429 ZNF219Q9P2Y4 722 aaPredicted RBP13.95□□□□□ -0.18
SCUBE2-211ENST00000531429 APLP2Q06481 763 aa13.81□□□□□ -0.2
SCUBE2-211ENST00000531429 FBXO3Q9UK99 471 aa13.81□□□□□ -0.2
SCUBE2-211ENST00000531429 SPDYE4A6NLX3 237 aa13.8□□□□□ -0.2
SCUBE2-211ENST00000531429 MKRN4PQ13434 485 aaPredicted RBP13.76□□□□□ -0.21
SCUBE2-211ENST00000531429 PROM2Q8N271 834 aa13.72□□□□□ -0.21
SCUBE2-211ENST00000531429 VASPP50552 380 aaPredicted RBP13.67□□□□□ -0.22
SCUBE2-211ENST00000531429 PLCB2Q00722 1185 aa13.62□□□□□ -0.23
SCUBE2-211ENST00000531429 FBLN2P98095 1184 aa13.6□□□□□ -0.23
SCUBE2-211ENST00000531429 IFNLR1Q8IU57 520 aaPredicted RBP13.54□□□□□ -0.24
SCUBE2-211ENST00000531429 TRHP20396 242 aaPredicted RBP13.52□□□□□ -0.25
SCUBE2-211ENST00000531429 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
SCUBE2-211ENST00000531429 SPINK5Q9NQ38 1064 aaPredicted RBP13.51□□□□□ -0.25
SCUBE2-211ENST00000531429 ATAD2BQ9ULI0 1458 aa13.5□□□□□ -0.25
SCUBE2-211ENST00000531429 SMARCA4P51532 1647 aa13.49□□□□□ -0.25
SCUBE2-211ENST00000531429 POLA2Q14181 598 aa13.48□□□□□ -0.25
SCUBE2-211ENST00000531429 SMARCA2P51531 1590 aa13.46□□□□□ -0.25
SCUBE2-211ENST00000531429 ERCC6Q03468 1493 aa13.46□□□□□ -0.25
SCUBE2-211ENST00000531429 HMGXB3Q12766 1538 aa13.43□□□□□ -0.26
SCUBE2-211ENST00000531429 HAP1P54257 671 aaPredicted RBP13.42□□□□□ -0.26
SCUBE2-211ENST00000531429 PKD2Q13563 968 aa13.42□□□□□ -0.26
SCUBE2-211ENST00000531429 BAZ1AQ9NRL2 1556 aaPredicted RBP13.41□□□□□ -0.26
SCUBE2-211ENST00000531429 BAZ1BQ9UIG0 1483 aaKnown RBP13.4□□□□□ -0.26
SCUBE2-211ENST00000531429 CAPN15O75808 1086 aa13.38□□□□□ -0.27
SCUBE2-211ENST00000531429 CUX2O14529 1486 aa13.37□□□□□ -0.27
SCUBE2-211ENST00000531429 NESP48681 1621 aa13.36□□□□□ -0.27
SCUBE2-211ENST00000531429 DNAJC5Q9H3Z4 198 aa13.35□□□□□ -0.27
SCUBE2-211ENST00000531429 MROH2BQ7Z745 1585 aa13.33□□□□□ -0.28
SCUBE2-211ENST00000531429 RNF39Q9H2S5 420 aa13.33□□□□□ -0.28
SCUBE2-211ENST00000531429 PEG3Q9GZU2 1588 aa13.31□□□□□ -0.28
SCUBE2-211ENST00000531429 ZBTB12Q9Y330 459 aaPredicted RBP13.3□□□□□ -0.28
SCUBE2-211ENST00000531429 ABCB7O75027 752 aa13.24□□□□□ -0.29
SCUBE2-211ENST00000531429 LAMC3Q9Y6N6 1575 aa13.23□□□□□ -0.29
SCUBE2-211ENST00000531429 SPOCK2Q92563 424 aa13.22□□□□□ -0.29
SCUBE2-211ENST00000531429 VSIG10Q8N0Z9 540 aa13.21□□□□□ -0.29
SCUBE2-211ENST00000531429 BCANQ96GW7 911 aa13.21□□□□□ -0.29
SCUBE2-211ENST00000531429 THOC2Q8NI27 1593 aaKnown RBP13.2□□□□□ -0.3
SCUBE2-211ENST00000531429 KLHL34Q8N239 644 aa13.19□□□□□ -0.3
SCUBE2-211ENST00000531429 C1QBPQ07021 282 aaKnown RBP13.18□□□□□ -0.3
SCUBE2-211ENST00000531429 PDS5BQ9NTI5 1447 aa13.17□□□□□ -0.3
SCUBE2-211ENST00000531429 ECM2O94769 699 aaPredicted RBP13.17□□□□□ -0.3
SCUBE2-211ENST00000531429 WIZO95785 1651 aa13.17□□□□□ -0.3
SCUBE2-211ENST00000531429 KIF21AQ7Z4S6 1674 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms