RNA–Protein interactions for RNA: ENST00000530199.5

SVIP-204, Transcript of small VCP interacting protein, humanhuman

TSL 2

Gene SVIP, Length 549 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-204ENST00000530199 CHIC1Q5VXU3 224 aa25.92■■□□□ 1.74
SVIP-204ENST00000530199 AEBP2Q6ZN18 517 aaPredicted RBP25.89■■□□□ 1.74
SVIP-204ENST00000530199 PHF23Q9BUL5 403 aaPredicted RBP22.89■■□□□ 1.25
SVIP-204ENST00000530199 SENP3Q9H4L4 574 aaPredicted RBP21.84■■□□□ 1.09
SVIP-204ENST00000530199 PLPPR3Q6T4P5 718 aa21.34■■□□□ 1.01
SVIP-204ENST00000530199 FOXD1Q16676 465 aa20.2■□□□□ 0.82
SVIP-204ENST00000530199 ADRA2BP18089 450 aa19.99■□□□□ 0.79
SVIP-204ENST00000530199 PPP6R1Q9UPN7 881 aa19.98■□□□□ 0.79
SVIP-204ENST00000530199 KCNA4P22459 653 aa19.21■□□□□ 0.67
SVIP-204ENST00000530199 PIAS4Q8N2W9 510 aaPredicted RBP19.2■□□□□ 0.66
SVIP-204ENST00000530199 PPP4R3CPQ6ZMV5 832 aa18.89■□□□□ 0.61
SVIP-204ENST00000530199 EHMT2Q96KQ7 1210 aa18.64■□□□□ 0.57
SVIP-204ENST00000530199 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.56
SVIP-204ENST00000530199 SLC4A1APQ9BWU0 796 aaKnown RBP18.4■□□□□ 0.54
SVIP-204ENST00000530199 MSH5O43196 834 aa18.35■□□□□ 0.53
SVIP-204ENST00000530199 NPM3O75607 178 aaKnown RBP18.33■□□□□ 0.52
SVIP-204ENST00000530199 SCAF1Q9H7N4 1312 aaKnown RBP18.26■□□□□ 0.51
SVIP-204ENST00000530199 CNKSR2Q8WXI2 1034 aa18.21■□□□□ 0.51
SVIP-204ENST00000530199 CSRNP3Q8WYN3 585 aa18.14■□□□□ 0.49
SVIP-204ENST00000530199 MAPK8IP2Q13387 824 aaPredicted RBP17.94■□□□□ 0.46
SVIP-204ENST00000530199 DNAJC5BQ9UF47 199 aa17.72■□□□□ 0.43
SVIP-204ENST00000530199 ZBTB22O15209 634 aa17.71■□□□□ 0.43
SVIP-204ENST00000530199 RNF216Q9NWF9 866 aaPredicted RBP17.69■□□□□ 0.42
SVIP-204ENST00000530199 DMRT2Q9Y5R5 561 aa17.54■□□□□ 0.4
SVIP-204ENST00000530199 FOXD4L1Q9NU39 408 aa17.47■□□□□ 0.39
SVIP-204ENST00000530199 HOXD11P31277 338 aaPredicted RBP17.45■□□□□ 0.38
SVIP-204ENST00000530199 NISCHQ9Y2I1 1504 aa17.41■□□□□ 0.38
SVIP-204ENST00000530199 SLC4A2P04920 1241 aa17.15■□□□□ 0.34
SVIP-204ENST00000530199 MYCNP04198 464 aaPredicted RBP16.9■□□□□ 0.3
SVIP-204ENST00000530199 ATXN8OSP0DMR3 200 aa16.82■□□□□ 0.28
SVIP-204ENST00000530199 ABCC9O60706 1549 aa16.77■□□□□ 0.28
SVIP-204ENST00000530199 DCAF8L1A6NGE4 600 aa16.73■□□□□ 0.27
SVIP-204ENST00000530199 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.61■□□□□ 0.25
SVIP-204ENST00000530199 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.43■□□□□ 0.22
SVIP-204ENST00000530199 HNRNPUL2Q1KMD3 747 aaKnown RBP16.43■□□□□ 0.22
SVIP-204ENST00000530199 ATF5Q9Y2D1 282 aaPredicted RBP16.43■□□□□ 0.22
SVIP-204ENST00000530199 U3KPZ7 1027 aaPredicted RBP16.43■□□□□ 0.22
SVIP-204ENST00000530199 SAMD1Q6SPF0 538 aaPredicted RBP16.41■□□□□ 0.22
SVIP-204ENST00000530199 FKBP8Q14318 412 aa16.34■□□□□ 0.21
SVIP-204ENST00000530199 APLP2Q06481 763 aa16.09■□□□□ 0.17
SVIP-204ENST00000530199 ZNF219Q9P2Y4 722 aaPredicted RBP16.08■□□□□ 0.16
SVIP-204ENST00000530199 AMER1Q5JTC6 1135 aaPredicted RBP16.06■□□□□ 0.16
SVIP-204ENST00000530199 RTN4Q9NQC3 1192 aaKnown RBP16.06■□□□□ 0.16
SVIP-204ENST00000530199 CCDC180Q9P1Z9 1646 aa16.01■□□□□ 0.15
SVIP-204ENST00000530199 DNAJC5Q9H3Z4 198 aa15.88■□□□□ 0.13
SVIP-204ENST00000530199 RNF39Q9H2S5 420 aa15.81■□□□□ 0.12
SVIP-204ENST00000530199 SPINK5Q9NQ38 1064 aaPredicted RBP15.78■□□□□ 0.12
SVIP-204ENST00000530199 TRHP20396 242 aaPredicted RBP15.75■□□□□ 0.11
SVIP-204ENST00000530199 MKRN4PQ13434 485 aaPredicted RBP15.75■□□□□ 0.11
SVIP-204ENST00000530199 SPDYE4A6NLX3 237 aa15.69■□□□□ 0.1
SVIP-204ENST00000530199 CAPN15O75808 1086 aa15.67■□□□□ 0.1
SVIP-204ENST00000530199 POLA2Q14181 598 aa15.67■□□□□ 0.1
SVIP-204ENST00000530199 FBLN2P98095 1184 aa15.66■□□□□ 0.1
SVIP-204ENST00000530199 C1QBPQ07021 282 aaKnown RBP15.65■□□□□ 0.1
SVIP-204ENST00000530199 RB1CC1Q8TDY2 1594 aa15.64■□□□□ 0.09
SVIP-204ENST00000530199 SLC24A1O60721 1099 aa15.58■□□□□ 0.08
SVIP-204ENST00000530199 FBXO3Q9UK99 471 aa15.58■□□□□ 0.08
SVIP-204ENST00000530199 PROM2Q8N271 834 aa15.56■□□□□ 0.08
SVIP-204ENST00000530199 POTEDQ86YR6 584 aa15.55■□□□□ 0.08
SVIP-204ENST00000530199 PABPN1Q86U42 306 aaKnown RBP eCLIP15.45■□□□□ 0.06
SVIP-204ENST00000530199 ZBTB12Q9Y330 459 aaPredicted RBP15.44■□□□□ 0.06
SVIP-204ENST00000530199 ABCB7O75027 752 aa15.43■□□□□ 0.06
SVIP-204ENST00000530199 VASPP50552 380 aaPredicted RBP15.36■□□□□ 0.05
SVIP-204ENST00000530199 NACADO15069 1562 aa15.36■□□□□ 0.05
SVIP-204ENST00000530199 DSG3P32926 999 aa15.26■□□□□ 0.03
SVIP-204ENST00000530199 CECR2Q9BXF3 1484 aa15.24■□□□□ 0.03
SVIP-204ENST00000530199 BICRAQ9NZM4 1560 aa15.23■□□□□ 0.03
SVIP-204ENST00000530199 UNC13AQ9UPW8 1703 aa15.23■□□□□ 0.03
SVIP-204ENST00000530199 IFNLR1Q8IU57 520 aaPredicted RBP15.21■□□□□ 0.03
SVIP-204ENST00000530199 CC2D2AQ9P2K1 1620 aa15.14■□□□□ 0.01
SVIP-204ENST00000530199 ZNF692Q9BU19 519 aaPredicted RBP15.13■□□□□ 0.01
SVIP-204ENST00000530199 OSCARQ8IYS5 282 aa15.1■□□□□ 0.01
SVIP-204ENST00000530199 SPDYE2BA6NHP3 402 aa15.09■□□□□ 0.01
SVIP-204ENST00000530199 SPDYE6P0CI01 402 aa15.09■□□□□ 0.01
SVIP-204ENST00000530199 SPDYE2Q495Y8 402 aa15.09■□□□□ 0.01
SVIP-204ENST00000530199 SSUH2Q9Y2M2 353 aa15.06■□□□□ 0
SVIP-204ENST00000530199 SHROOM4Q9ULL8 1493 aa15.03■□□□□ -0
SVIP-204ENST00000530199 STAG3Q9UJ98 1225 aa14.99□□□□□ -0.01
SVIP-204ENST00000530199 PKD2Q13563 968 aa14.96□□□□□ -0.01
SVIP-204ENST00000530199 MYO15BQ96JP2 1530 aa14.93□□□□□ -0.02
SVIP-204ENST00000530199 KLHL34Q8N239 644 aa14.92□□□□□ -0.02
SVIP-204ENST00000530199 EIF4G1Q04637 1599 aaKnown RBP14.91□□□□□ -0.02
SVIP-204ENST00000530199 CUX2O14529 1486 aa14.91□□□□□ -0.02
SVIP-204ENST00000530199 DCAF8L2P0C7V8 631 aa14.91□□□□□ -0.02
SVIP-204ENST00000530199 SPOCK2Q92563 424 aa14.9□□□□□ -0.02
SVIP-204ENST00000530199 CACNB1Q02641 598 aaPredicted RBP14.89□□□□□ -0.03
SVIP-204ENST00000530199 PLCD3Q8N3E9 789 aa14.86□□□□□ -0.03
SVIP-204ENST00000530199 PLCB2Q00722 1185 aa14.83□□□□□ -0.04
SVIP-204ENST00000530199 MIER1Q8N108 512 aa14.81□□□□□ -0.04
SVIP-204ENST00000530199 ECM2O94769 699 aaPredicted RBP14.72□□□□□ -0.05
SVIP-204ENST00000530199 TRIM41Q8WV44 630 aa14.68□□□□□ -0.06
SVIP-204ENST00000530199 PLEKHG5O94827 1062 aa14.66□□□□□ -0.06
SVIP-204ENST00000530199 ZBTB47Q9UFB7 747 aaPredicted RBP14.65□□□□□ -0.06
SVIP-204ENST00000530199 HAP1P54257 671 aaPredicted RBP14.6□□□□□ -0.07
SVIP-204ENST00000530199 RGL2O15211 777 aa14.58□□□□□ -0.08
SVIP-204ENST00000530199 NPM1P06748 294 aaKnown RBP eCLIP14.55□□□□□ -0.08
SVIP-204ENST00000530199 BBXQ8WY36 941 aaPredicted RBP14.55□□□□□ -0.08
SVIP-204ENST00000530199 CIZ1Q9ULV3 898 aaPredicted RBP14.55□□□□□ -0.08
SVIP-204ENST00000530199 ERCC6Q03468 1493 aa14.55□□□□□ -0.08
SVIP-204ENST00000530199 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms