RNA–Protein interactions for RNA: ENST00000529565.1

CASP4-207, Transcript of caspase 4, humanhuman

TSL 2

Gene CASP4, Length 4,745 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-207ENST00000529565 NISCHQ9Y2I1 1504 aa8.9□□□□□ -0.99
CASP4-207ENST00000529565 CHIC1Q5VXU3 224 aa8.85□□□□□ -0.99
CASP4-207ENST00000529565 AEBP2Q6ZN18 517 aaPredicted RBP8.54□□□□□ -1.04
CASP4-207ENST00000529565 DCAF8L2P0C7V8 631 aa8.37□□□□□ -1.07
CASP4-207ENST00000529565 SHROOM4Q9ULL8 1493 aa7.91□□□□□ -1.14
CASP4-207ENST00000529565 SUPT5HO00267 1087 aaKnown RBP7.9□□□□□ -1.14
CASP4-207ENST00000529565 PHF23Q9BUL5 403 aaPredicted RBP7.63□□□□□ -1.19
CASP4-207ENST00000529565 SLC24A1O60721 1099 aa7.55□□□□□ -1.2
CASP4-207ENST00000529565 CCDC180Q9P1Z9 1646 aa7.52□□□□□ -1.2
CASP4-207ENST00000529565 ABCC9O60706 1549 aa7.51□□□□□ -1.21
CASP4-207ENST00000529565 SENP3Q9H4L4 574 aaPredicted RBP7.48□□□□□ -1.21
CASP4-207ENST00000529565 TRIM41Q8WV44 630 aa7.43□□□□□ -1.22
CASP4-207ENST00000529565 ZCCHC6Q5VYS8 1495 aaKnown RBP7.4□□□□□ -1.22
CASP4-207ENST00000529565 PLPPR3Q6T4P5 718 aa7.4□□□□□ -1.22
CASP4-207ENST00000529565 APLP2Q06481 763 aa7.39□□□□□ -1.23
CASP4-207ENST00000529565 EHMT2Q96KQ7 1210 aa7.38□□□□□ -1.23
CASP4-207ENST00000529565 FAM9AQ8IZU1 332 aaPredicted RBP7.37□□□□□ -1.23
CASP4-207ENST00000529565 PABPN1Q86U42 306 aaKnown RBP eCLIP7.29□□□□□ -1.24
CASP4-207ENST00000529565 UBTFP17480 764 aaKnown RBP7.25□□□□□ -1.25
CASP4-207ENST00000529565 RB1CC1Q8TDY2 1594 aa7.23□□□□□ -1.25
CASP4-207ENST00000529565 SCRIBQ14160 1630 aa7.22□□□□□ -1.25
CASP4-207ENST00000529565 NACADO15069 1562 aa7.22□□□□□ -1.25
CASP4-207ENST00000529565 DCAF1Q9Y4B6 1507 aa7.21□□□□□ -1.26
CASP4-207ENST00000529565 RANGAP1P46060 587 aaPredicted RBP7.17□□□□□ -1.26
CASP4-207ENST00000529565 PCGF6Q9BYE7 350 aa7.15□□□□□ -1.26
CASP4-207ENST00000529565 ATP1B4Q9UN42 357 aaPredicted RBP7.12□□□□□ -1.27
CASP4-207ENST00000529565 ZEB1P37275 1124 aaPredicted RBP7.12□□□□□ -1.27
CASP4-207ENST00000529565 RTN4Q9NQC3 1192 aaKnown RBP7.12□□□□□ -1.27
CASP4-207ENST00000529565 TTBK1Q5TCY1 1321 aaPredicted RBP7.12□□□□□ -1.27
CASP4-207ENST00000529565 MYO15BQ96JP2 1530 aa7.07□□□□□ -1.28
CASP4-207ENST00000529565 LOC105371045A0A1W2PR82 267 aa7.05□□□□□ -1.28
CASP4-207ENST00000529565 TRIM26Q12899 539 aaPredicted RBP7.05□□□□□ -1.28
CASP4-207ENST00000529565 CCER1Q8TC90 406 aaPredicted RBP7.04□□□□□ -1.28
CASP4-207ENST00000529565 RSF1Q96T23 1441 aaPredicted RBP7.01□□□□□ -1.29
CASP4-207ENST00000529565 CSRNP3Q8WYN3 585 aa7.01□□□□□ -1.29
CASP4-207ENST00000529565 BAZ1AQ9NRL2 1556 aaPredicted RBP6.98□□□□□ -1.29
CASP4-207ENST00000529565 KCNA4P22459 653 aa6.98□□□□□ -1.29
CASP4-207ENST00000529565 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.96□□□□□ -1.3
CASP4-207ENST00000529565 HNRNPUL2Q1KMD3 747 aaKnown RBP6.96□□□□□ -1.3
CASP4-207ENST00000529565 PPARGC1BQ86YN6 1023 aaKnown RBP6.95□□□□□ -1.3
CASP4-207ENST00000529565 BAZ1BQ9UIG0 1483 aaKnown RBP6.94□□□□□ -1.3
CASP4-207ENST00000529565 CECR2Q9BXF3 1484 aa6.89□□□□□ -1.31
CASP4-207ENST00000529565 PELP1Q8IZL8 1130 aaKnown RBP6.89□□□□□ -1.31
CASP4-207ENST00000529565 EEA1Q15075 1411 aa6.87□□□□□ -1.31
CASP4-207ENST00000529565 ITGAEP38570 1179 aa6.87□□□□□ -1.31
CASP4-207ENST00000529565 SMARCA2P51531 1590 aa6.85□□□□□ -1.31
CASP4-207ENST00000529565 FBLN2P98095 1184 aa6.85□□□□□ -1.31
CASP4-207ENST00000529565 HRCP23327 699 aa6.85□□□□□ -1.31
CASP4-207ENST00000529565 MYT1LQ9UL68 1186 aa6.84□□□□□ -1.31
CASP4-207ENST00000529565 WRNQ14191 1432 aaPredicted RBP eCLIP6.84□□□□□ -1.31
CASP4-207ENST00000529565 MROH2BQ7Z745 1585 aa6.84□□□□□ -1.31
CASP4-207ENST00000529565 CENPBP07199 599 aaPredicted RBP6.83□□□□□ -1.32
CASP4-207ENST00000529565 FAM50AQ14320 339 aaKnown RBP6.82□□□□□ -1.32
CASP4-207ENST00000529565 PRKCSHP14314 528 aaPredicted RBP6.81□□□□□ -1.32
CASP4-207ENST00000529565 CDK11AQ9UQ88 783 aaPredicted RBP6.8□□□□□ -1.32
CASP4-207ENST00000529565 TOP2AP11388 1531 aaKnown RBP6.78□□□□□ -1.32
CASP4-207ENST00000529565 KIF27Q86VH2 1401 aa6.78□□□□□ -1.32
CASP4-207ENST00000529565 P3H3Q8IVL6 736 aa6.77□□□□□ -1.33
CASP4-207ENST00000529565 GOLGA3Q08378 1498 aa6.77□□□□□ -1.33
CASP4-207ENST00000529565 CCDC88BA6NC98 1476 aa6.77□□□□□ -1.33
CASP4-207ENST00000529565 SMARCA4P51532 1647 aa6.76□□□□□ -1.33
CASP4-207ENST00000529565 CLIP1P30622 1438 aa6.74□□□□□ -1.33
CASP4-207ENST00000529565 CEP164Q9UPV0 1460 aa6.74□□□□□ -1.33
CASP4-207ENST00000529565 ATAD2BQ9ULI0 1458 aa6.74□□□□□ -1.33
CASP4-207ENST00000529565 TRIM52Q96A61 297 aa6.74□□□□□ -1.33
CASP4-207ENST00000529565 WIZO95785 1651 aa6.73□□□□□ -1.33
CASP4-207ENST00000529565 CHMP7Q8WUX9 453 aaPredicted RBP6.73□□□□□ -1.33
CASP4-207ENST00000529565 TNIKQ9UKE5 1360 aa6.72□□□□□ -1.33
CASP4-207ENST00000529565 ERCC6Q03468 1493 aa6.72□□□□□ -1.33
CASP4-207ENST00000529565 PDS5BQ9NTI5 1447 aa6.72□□□□□ -1.33
CASP4-207ENST00000529565 FOXD1Q16676 465 aa6.71□□□□□ -1.34
CASP4-207ENST00000529565 CEP162Q5TB80 1403 aa6.7□□□□□ -1.34
CASP4-207ENST00000529565 CADPSQ9ULU8 1353 aa6.69□□□□□ -1.34
CASP4-207ENST00000529565 NCBP3Q53F19 620 aaKnown RBP6.68□□□□□ -1.34
CASP4-207ENST00000529565 NPM1P06748 294 aaKnown RBP eCLIP6.68□□□□□ -1.34
CASP4-207ENST00000529565 ARID3CA6NKF2 412 aa6.67□□□□□ -1.34
CASP4-207ENST00000529565 NEFLP07196 543 aa6.67□□□□□ -1.34
CASP4-207ENST00000529565 CUX2O14529 1486 aa6.67□□□□□ -1.34
CASP4-207ENST00000529565 MTUS2Q5JR59 1369 aa6.67□□□□□ -1.34
CASP4-207ENST00000529565 ADRA2BP18089 450 aa6.65□□□□□ -1.34
CASP4-207ENST00000529565 CARMIL1Q5VZK9 1371 aa6.65□□□□□ -1.34
CASP4-207ENST00000529565 ZNF777Q9ULD5 760 aaPredicted RBP6.65□□□□□ -1.34
CASP4-207ENST00000529565 NCAPD3P42695 1498 aa6.65□□□□□ -1.34
CASP4-207ENST00000529565 NEUROD1Q13562 356 aa6.65□□□□□ -1.35
CASP4-207ENST00000529565 POLR3GLQ9BT43 218 aa6.65□□□□□ -1.35
CASP4-207ENST00000529565 ABCC8Q09428 1581 aa6.64□□□□□ -1.35
CASP4-207ENST00000529565 SOGA1O94964 1423 aa6.64□□□□□ -1.35
CASP4-207ENST00000529565 ACIN1Q9UKV3 1341 aaKnown RBP6.64□□□□□ -1.35
CASP4-207ENST00000529565 YTHDC1Q96MU7 727 aaKnown RBP6.63□□□□□ -1.35
CASP4-207ENST00000529565 ZBTB22O15209 634 aa6.63□□□□□ -1.35
CASP4-207ENST00000529565 FHAD1B1AJZ9 1412 aa6.62□□□□□ -1.35
CASP4-207ENST00000529565 DIEXFQ68CQ4 756 aaKnown RBP6.62□□□□□ -1.35
CASP4-207ENST00000529565 EIF4G1Q04637 1599 aaKnown RBP6.62□□□□□ -1.35
CASP4-207ENST00000529565 PLEKHD1A6NEE1 506 aa6.6□□□□□ -1.35
CASP4-207ENST00000529565 TSPY4P0CV99 314 aa6.6□□□□□ -1.35
CASP4-207ENST00000529565 TSPY10P0CW01 314 aa6.6□□□□□ -1.35
CASP4-207ENST00000529565 AMER1Q5JTC6 1135 aaPredicted RBP6.59□□□□□ -1.35
CASP4-207ENST00000529565 DAXXQ9UER7 740 aaPredicted RBP6.59□□□□□ -1.35
CASP4-207ENST00000529565 FANCD2Q9BXW9 1451 aa6.58□□□□□ -1.36
CASP4-207ENST00000529565 ZNF316A6NFI3 1004 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms