RNA–Protein interactions for RNA: ENST00000526955.1

PKNOX2-202, Transcript of PBX/knotted 1 homeobox 2, humanhuman

TSL 1 (best)

Gene PKNOX2, Length 4,531 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2-202ENST00000526955 NISCHQ9Y2I1 1504 aa19.15■□□□□ 0.66
PKNOX2-202ENST00000526955 DCAF8L2P0C7V8 631 aa18.16■□□□□ 0.5
PKNOX2-202ENST00000526955 SUPT5HO00267 1087 aaKnown RBP16.93■□□□□ 0.3
PKNOX2-202ENST00000526955 SHROOM4Q9ULL8 1493 aa16.9■□□□□ 0.3
PKNOX2-202ENST00000526955 HRCP23327 699 aa16.75■□□□□ 0.27
PKNOX2-202ENST00000526955 PCGF6Q9BYE7 350 aa16.54■□□□□ 0.24
PKNOX2-202ENST00000526955 FAM9AQ8IZU1 332 aaPredicted RBP16.43■□□□□ 0.22
PKNOX2-202ENST00000526955 CHIC1Q5VXU3 224 aa16.42■□□□□ 0.22
PKNOX2-202ENST00000526955 PELP1Q8IZL8 1130 aaKnown RBP16.42■□□□□ 0.22
PKNOX2-202ENST00000526955 ZEB1P37275 1124 aaPredicted RBP16.28■□□□□ 0.2
PKNOX2-202ENST00000526955 ZCCHC6Q5VYS8 1495 aaKnown RBP16.23■□□□□ 0.19
PKNOX2-202ENST00000526955 TRIM26Q12899 539 aaPredicted RBP16.18■□□□□ 0.18
PKNOX2-202ENST00000526955 DCAF1Q9Y4B6 1507 aa16.17■□□□□ 0.18
PKNOX2-202ENST00000526955 PPARGC1BQ86YN6 1023 aaKnown RBP16.15■□□□□ 0.18
PKNOX2-202ENST00000526955 MYO15BQ96JP2 1530 aa16.12■□□□□ 0.17
PKNOX2-202ENST00000526955 MYT1Q01538 1121 aa16.07■□□□□ 0.16
PKNOX2-202ENST00000526955 CCDC180Q9P1Z9 1646 aa16.05■□□□□ 0.16
PKNOX2-202ENST00000526955 APLP2Q06481 763 aa16.02■□□□□ 0.15
PKNOX2-202ENST00000526955 LOC105371045A0A1W2PR82 267 aa15.94■□□□□ 0.14
PKNOX2-202ENST00000526955 EHMT2Q96KQ7 1210 aa15.91■□□□□ 0.14
PKNOX2-202ENST00000526955 TRIM41Q8WV44 630 aa15.8■□□□□ 0.12
PKNOX2-202ENST00000526955 CENPBP07199 599 aaPredicted RBP15.76■□□□□ 0.11
PKNOX2-202ENST00000526955 CCER1Q8TC90 406 aaPredicted RBP15.61■□□□□ 0.09
PKNOX2-202ENST00000526955 ATP1B4Q9UN42 357 aaPredicted RBP15.6■□□□□ 0.09
PKNOX2-202ENST00000526955 SCAF1Q9H7N4 1312 aaKnown RBP15.56■□□□□ 0.08
PKNOX2-202ENST00000526955 RANGAP1P46060 587 aaPredicted RBP15.51■□□□□ 0.07
PKNOX2-202ENST00000526955 ACIN1Q9UKV3 1341 aaKnown RBP15.5■□□□□ 0.07
PKNOX2-202ENST00000526955 TTBK1Q5TCY1 1321 aaPredicted RBP15.43■□□□□ 0.06
PKNOX2-202ENST00000526955 DIEXFQ68CQ4 756 aaKnown RBP15.41■□□□□ 0.06
PKNOX2-202ENST00000526955 MYT1LQ9UL68 1186 aa15.4■□□□□ 0.06
PKNOX2-202ENST00000526955 ABCC9O60706 1549 aa15.39■□□□□ 0.05
PKNOX2-202ENST00000526955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.35■□□□□ 0.05
PKNOX2-202ENST00000526955 GTF3C3Q9Y5Q9 886 aa15.35■□□□□ 0.05
PKNOX2-202ENST00000526955 RSF1Q96T23 1441 aaPredicted RBP15.33■□□□□ 0.04
PKNOX2-202ENST00000526955 UBTFP17480 764 aaKnown RBP15.32■□□□□ 0.04
PKNOX2-202ENST00000526955 HNRNPUL2Q1KMD3 747 aaKnown RBP15.29■□□□□ 0.04
PKNOX2-202ENST00000526955 NEUROD1Q13562 356 aa15.28■□□□□ 0.04
PKNOX2-202ENST00000526955 RB1CC1Q8TDY2 1594 aa15.28■□□□□ 0.04
PKNOX2-202ENST00000526955 SCRIBQ14160 1630 aa15.21■□□□□ 0.03
PKNOX2-202ENST00000526955 ZNF316A6NFI3 1004 aaPredicted RBP15.18■□□□□ 0.02
PKNOX2-202ENST00000526955 YTHDC1Q96MU7 727 aaKnown RBP15.16■□□□□ 0.02
PKNOX2-202ENST00000526955 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
PKNOX2-202ENST00000526955 CLSPNQ9HAW4 1339 aa15.04■□□□□ -0
PKNOX2-202ENST00000526955 WRNQ14191 1432 aaPredicted RBP eCLIP14.94□□□□□ -0.02
PKNOX2-202ENST00000526955 EEA1Q15075 1411 aa14.94□□□□□ -0.02
PKNOX2-202ENST00000526955 CEP162Q5TB80 1403 aa14.93□□□□□ -0.02
PKNOX2-202ENST00000526955 TNIKQ9UKE5 1360 aa14.91□□□□□ -0.02
PKNOX2-202ENST00000526955 FBLN2P98095 1184 aa14.91□□□□□ -0.02
PKNOX2-202ENST00000526955 PRKCSHP14314 528 aaPredicted RBP14.9□□□□□ -0.02
PKNOX2-202ENST00000526955 CSRNP3Q8WYN3 585 aa14.9□□□□□ -0.02
PKNOX2-202ENST00000526955 ERICH6Q7L0X2 663 aa14.89□□□□□ -0.03
PKNOX2-202ENST00000526955 NACADO15069 1562 aa14.89□□□□□ -0.03
PKNOX2-202ENST00000526955 MROH2BQ7Z745 1585 aa14.84□□□□□ -0.03
PKNOX2-202ENST00000526955 SLC24A1O60721 1099 aa14.84□□□□□ -0.03
PKNOX2-202ENST00000526955 MIER1Q8N108 512 aa14.84□□□□□ -0.03
PKNOX2-202ENST00000526955 CECR2Q9BXF3 1484 aa14.84□□□□□ -0.03
PKNOX2-202ENST00000526955 GOLGA3Q08378 1498 aa14.8□□□□□ -0.04
PKNOX2-202ENST00000526955 BAZ1AQ9NRL2 1556 aaPredicted RBP14.8□□□□□ -0.04
PKNOX2-202ENST00000526955 WIZO95785 1651 aa14.76□□□□□ -0.05
PKNOX2-202ENST00000526955 NEFLP07196 543 aa14.74□□□□□ -0.05
PKNOX2-202ENST00000526955 ITGAEP38570 1179 aa14.7□□□□□ -0.06
PKNOX2-202ENST00000526955 CCDC88BA6NC98 1476 aa14.67□□□□□ -0.06
PKNOX2-202ENST00000526955 CEP164Q9UPV0 1460 aa14.67□□□□□ -0.06
PKNOX2-202ENST00000526955 TOP2AP11388 1531 aaKnown RBP14.67□□□□□ -0.06
PKNOX2-202ENST00000526955 CLIP1P30622 1438 aa14.67□□□□□ -0.06
PKNOX2-202ENST00000526955 NPM1P06748 294 aaKnown RBP eCLIP14.65□□□□□ -0.06
PKNOX2-202ENST00000526955 SOGA1O94964 1423 aa14.65□□□□□ -0.06
PKNOX2-202ENST00000526955 ABCC8Q09428 1581 aa14.65□□□□□ -0.06
PKNOX2-202ENST00000526955 SLC4A1APQ9BWU0 796 aaKnown RBP14.63□□□□□ -0.07
PKNOX2-202ENST00000526955 ESF1Q9H501 851 aaKnown RBP14.62□□□□□ -0.07
PKNOX2-202ENST00000526955 POLR3GLQ9BT43 218 aa14.61□□□□□ -0.07
PKNOX2-202ENST00000526955 SUPT16HQ9Y5B9 1047 aaKnown RBP14.59□□□□□ -0.07
PKNOX2-202ENST00000526955 ANP32EQ9BTT0 268 aa14.58□□□□□ -0.08
PKNOX2-202ENST00000526955 VPS8Q8N3P4 1428 aa14.57□□□□□ -0.08
PKNOX2-202ENST00000526955 BCANQ96GW7 911 aa14.53□□□□□ -0.08
PKNOX2-202ENST00000526955 BCL11AQ9H165 835 aa14.51□□□□□ -0.09
PKNOX2-202ENST00000526955 EIF4G1Q04637 1599 aaKnown RBP14.51□□□□□ -0.09
PKNOX2-202ENST00000526955 SMARCA2P51531 1590 aa14.5□□□□□ -0.09
PKNOX2-202ENST00000526955 BAZ1BQ9UIG0 1483 aaKnown RBP14.49□□□□□ -0.09
PKNOX2-202ENST00000526955 SMARCA4P51532 1647 aa14.48□□□□□ -0.09
PKNOX2-202ENST00000526955 KIF21BO75037 1637 aa14.44□□□□□ -0.1
PKNOX2-202ENST00000526955 TSHZ2Q9NRE2 1034 aa14.43□□□□□ -0.1
PKNOX2-202ENST00000526955 RUSC2Q8N2Y8 1516 aa14.43□□□□□ -0.1
PKNOX2-202ENST00000526955 FKBP8Q14318 412 aa14.42□□□□□ -0.1
PKNOX2-202ENST00000526955 CDK11AQ9UQ88 783 aaPredicted RBP14.41□□□□□ -0.1
PKNOX2-202ENST00000526955 ANP32CO43423 234 aa14.4□□□□□ -0.1
PKNOX2-202ENST00000526955 FAM50AQ14320 339 aaKnown RBP14.4□□□□□ -0.1
PKNOX2-202ENST00000526955 TRIM52Q96A61 297 aa14.4□□□□□ -0.1
PKNOX2-202ENST00000526955 DHX57Q6P158 1386 aaKnown RBP14.39□□□□□ -0.11
PKNOX2-202ENST00000526955 PLPPR3Q6T4P5 718 aa14.35□□□□□ -0.11
PKNOX2-202ENST00000526955 STAG3Q9UJ98 1225 aa14.31□□□□□ -0.12
PKNOX2-202ENST00000526955 CNGB1Q14028 1251 aaPredicted RBP14.3□□□□□ -0.12
PKNOX2-202ENST00000526955 CCNB3Q8WWL7 1395 aa14.3□□□□□ -0.12
PKNOX2-202ENST00000526955 DDX10Q13206 875 aaKnown RBP14.29□□□□□ -0.12
PKNOX2-202ENST00000526955 ARID3CA6NKF2 412 aa14.29□□□□□ -0.12
PKNOX2-202ENST00000526955 RAPGEF2Q9Y4G8 1499 aa14.29□□□□□ -0.12
PKNOX2-202ENST00000526955 TIMELESSQ9UNS1 1208 aa14.27□□□□□ -0.13
PKNOX2-202ENST00000526955 CCER2I3L3R5 266 aa14.25□□□□□ -0.13
PKNOX2-202ENST00000526955 ZNF777Q9ULD5 760 aaPredicted RBP14.25□□□□□ -0.13
PKNOX2-202ENST00000526955 CHMP7Q8WUX9 453 aaPredicted RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms