RNA–Protein interactions for RNA: ENST00000524657.1

KDM2A-204, Transcript of lysine demethylase 2A, humanhuman

TSL 1 (best)

Gene KDM2A, Length 3,692 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM2A-204ENST00000524657 NISCHQ9Y2I1 1504 aa17.47■□□□□ 0.39
KDM2A-204ENST00000524657 HRCP23327 699 aa16.52■□□□□ 0.24
KDM2A-204ENST00000524657 PPARGC1BQ86YN6 1023 aaKnown RBP16.46■□□□□ 0.23
KDM2A-204ENST00000524657 PCGF6Q9BYE7 350 aa16.37■□□□□ 0.21
KDM2A-204ENST00000524657 SUPT5HO00267 1087 aaKnown RBP16.32■□□□□ 0.2
KDM2A-204ENST00000524657 SHROOM4Q9ULL8 1493 aa16.27■□□□□ 0.2
KDM2A-204ENST00000524657 PELP1Q8IZL8 1130 aaKnown RBP16.05■□□□□ 0.16
KDM2A-204ENST00000524657 MYO15BQ96JP2 1530 aa15.87■□□□□ 0.13
KDM2A-204ENST00000524657 CHIC1Q5VXU3 224 aa15.82■□□□□ 0.12
KDM2A-204ENST00000524657 SCAF1Q9H7N4 1312 aaKnown RBP15.82■□□□□ 0.12
KDM2A-204ENST00000524657 DCAF8L2P0C7V8 631 aa15.79■□□□□ 0.12
KDM2A-204ENST00000524657 LOC105371045A0A1W2PR82 267 aa15.7■□□□□ 0.1
KDM2A-204ENST00000524657 TRIM26Q12899 539 aaPredicted RBP15.55■□□□□ 0.08
KDM2A-204ENST00000524657 EHMT2Q96KQ7 1210 aa15.54■□□□□ 0.08
KDM2A-204ENST00000524657 MYT1Q01538 1121 aa15.4■□□□□ 0.06
KDM2A-204ENST00000524657 ZEB1P37275 1124 aaPredicted RBP15.38■□□□□ 0.05
KDM2A-204ENST00000524657 NEUROD1Q13562 356 aa15.37■□□□□ 0.05
KDM2A-204ENST00000524657 DCAF1Q9Y4B6 1507 aa15.35■□□□□ 0.05
KDM2A-204ENST00000524657 GTF3C3Q9Y5Q9 886 aa15.35■□□□□ 0.05
KDM2A-204ENST00000524657 ACIN1Q9UKV3 1341 aaKnown RBP15.33■□□□□ 0.04
KDM2A-204ENST00000524657 FAM9AQ8IZU1 332 aaPredicted RBP15.2■□□□□ 0.02
KDM2A-204ENST00000524657 CENPBP07199 599 aaPredicted RBP15.15■□□□□ 0.02
KDM2A-204ENST00000524657 CCDC180Q9P1Z9 1646 aa15.14■□□□□ 0.01
KDM2A-204ENST00000524657 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.12■□□□□ 0.01
KDM2A-204ENST00000524657 YTHDC1Q96MU7 727 aaKnown RBP15.11■□□□□ 0.01
KDM2A-204ENST00000524657 DIEXFQ68CQ4 756 aaKnown RBP15.06■□□□□ 0
KDM2A-204ENST00000524657 CCER1Q8TC90 406 aaPredicted RBP15.06■□□□□ 0
KDM2A-204ENST00000524657 TTBK1Q5TCY1 1321 aaPredicted RBP14.98□□□□□ -0.01
KDM2A-204ENST00000524657 TRIM41Q8WV44 630 aa14.91□□□□□ -0.02
KDM2A-204ENST00000524657 ZCCHC6Q5VYS8 1495 aaKnown RBP14.82□□□□□ -0.04
KDM2A-204ENST00000524657 BCL11AQ9H165 835 aa14.69□□□□□ -0.06
KDM2A-204ENST00000524657 MIER1Q8N108 512 aa14.68□□□□□ -0.06
KDM2A-204ENST00000524657 ZNF316A6NFI3 1004 aaPredicted RBP14.65□□□□□ -0.06
KDM2A-204ENST00000524657 ANP32EQ9BTT0 268 aa14.53□□□□□ -0.08
KDM2A-204ENST00000524657 CSRNP3Q8WYN3 585 aa14.49□□□□□ -0.09
KDM2A-204ENST00000524657 SUPT16HQ9Y5B9 1047 aaKnown RBP14.46□□□□□ -0.09
KDM2A-204ENST00000524657 BCANQ96GW7 911 aa14.44□□□□□ -0.1
KDM2A-204ENST00000524657 TSHZ2Q9NRE2 1034 aa14.44□□□□□ -0.1
KDM2A-204ENST00000524657 HNRNPUL2Q1KMD3 747 aaKnown RBP14.43□□□□□ -0.1
KDM2A-204ENST00000524657 RANGAP1P46060 587 aaPredicted RBP14.38□□□□□ -0.11
KDM2A-204ENST00000524657 RSF1Q96T23 1441 aaPredicted RBP14.26□□□□□ -0.13
KDM2A-204ENST00000524657 UBTFP17480 764 aaKnown RBP14.23□□□□□ -0.13
KDM2A-204ENST00000524657 RB1CC1Q8TDY2 1594 aa14.22□□□□□ -0.13
KDM2A-204ENST00000524657 FKBP8Q14318 412 aa14.18□□□□□ -0.14
KDM2A-204ENST00000524657 ITGAEP38570 1179 aa14.17□□□□□ -0.14
KDM2A-204ENST00000524657 KCNH8Q96L42 1107 aa14.16□□□□□ -0.14
KDM2A-204ENST00000524657 PRKCSHP14314 528 aaPredicted RBP14.14□□□□□ -0.15
KDM2A-204ENST00000524657 RBM19Q9Y4C8 960 aaKnown RBP14.12□□□□□ -0.15
KDM2A-204ENST00000524657 CLSPNQ9HAW4 1339 aa14.12□□□□□ -0.15
KDM2A-204ENST00000524657 CEP162Q5TB80 1403 aa14.09□□□□□ -0.15
KDM2A-204ENST00000524657 ABCC9O60706 1549 aa14.08□□□□□ -0.16
KDM2A-204ENST00000524657 ERICH6Q7L0X2 663 aa14.07□□□□□ -0.16
KDM2A-204ENST00000524657 NEFLP07196 543 aa14.03□□□□□ -0.16
KDM2A-204ENST00000524657 APLP2Q06481 763 aa14.01□□□□□ -0.17
KDM2A-204ENST00000524657 MSH5O43196 834 aa13.99□□□□□ -0.17
KDM2A-204ENST00000524657 SCRIBQ14160 1630 aa13.98□□□□□ -0.17
KDM2A-204ENST00000524657 TRIM52Q96A61 297 aa13.97□□□□□ -0.17
KDM2A-204ENST00000524657 WRNQ14191 1432 aaPredicted RBP eCLIP13.97□□□□□ -0.17
KDM2A-204ENST00000524657 SOGA1O94964 1423 aa13.92□□□□□ -0.18
KDM2A-204ENST00000524657 IRX6P78412 446 aaPredicted RBP13.92□□□□□ -0.18
KDM2A-204ENST00000524657 DDX10Q13206 875 aaKnown RBP13.91□□□□□ -0.18
KDM2A-204ENST00000524657 CCDC88BA6NC98 1476 aa13.89□□□□□ -0.19
KDM2A-204ENST00000524657 CECR2Q9BXF3 1484 aa13.89□□□□□ -0.19
KDM2A-204ENST00000524657 TNIKQ9UKE5 1360 aa13.88□□□□□ -0.19
KDM2A-204ENST00000524657 HIRIP3Q9BW71 556 aaPredicted RBP13.86□□□□□ -0.19
KDM2A-204ENST00000524657 ANO8Q9HCE9 1232 aaPredicted RBP13.86□□□□□ -0.19
KDM2A-204ENST00000524657 ABCC8Q09428 1581 aa13.85□□□□□ -0.19
KDM2A-204ENST00000524657 DEKP35659 375 aaKnown RBP13.85□□□□□ -0.19
KDM2A-204ENST00000524657 NBR1Q14596 966 aa13.83□□□□□ -0.2
KDM2A-204ENST00000524657 RUSC2Q8N2Y8 1516 aa13.82□□□□□ -0.2
KDM2A-204ENST00000524657 CDK11AQ9UQ88 783 aaPredicted RBP13.79□□□□□ -0.2
KDM2A-204ENST00000524657 MROH2BQ7Z745 1585 aa13.78□□□□□ -0.2
KDM2A-204ENST00000524657 DHX57Q6P158 1386 aaKnown RBP13.78□□□□□ -0.2
KDM2A-204ENST00000524657 CCDC136Q96JN2 1154 aa13.76□□□□□ -0.21
KDM2A-204ENST00000524657 CNGB1Q14028 1251 aaPredicted RBP13.74□□□□□ -0.21
KDM2A-204ENST00000524657 RTN4Q9NQC3 1192 aaKnown RBP13.73□□□□□ -0.21
KDM2A-204ENST00000524657 WIZO95785 1651 aa13.73□□□□□ -0.21
KDM2A-204ENST00000524657 CLIP1P30622 1438 aa13.71□□□□□ -0.22
KDM2A-204ENST00000524657 SALL2Q9Y467 1007 aaPredicted RBP13.7□□□□□ -0.22
KDM2A-204ENST00000524657 FANCIQ9NVI1 1328 aa13.68□□□□□ -0.22
KDM2A-204ENST00000524657 ANP32CO43423 234 aa13.68□□□□□ -0.22
KDM2A-204ENST00000524657 GOLGA3Q08378 1498 aa13.68□□□□□ -0.22
KDM2A-204ENST00000524657 HNRNPUQ00839 825 aaKnown RBP eCLIP13.66□□□□□ -0.22
KDM2A-204ENST00000524657 SIN3AQ96ST3 1273 aa13.65□□□□□ -0.22
KDM2A-204ENST00000524657 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.65□□□□□ -0.22
KDM2A-204ENST00000524657 KANK4Q5T7N3 995 aaPredicted RBP13.64□□□□□ -0.23
KDM2A-204ENST00000524657 ATP1B4Q9UN42 357 aaPredicted RBP13.63□□□□□ -0.23
KDM2A-204ENST00000524657 B4GALNT3Q6L9W6 998 aa13.61□□□□□ -0.23
KDM2A-204ENST00000524657 VPS8Q8N3P4 1428 aa13.6□□□□□ -0.23
KDM2A-204ENST00000524657 PAK3O75914 559 aaPredicted RBP13.6□□□□□ -0.23
KDM2A-204ENST00000524657 IL27Q8NEV9 243 aa13.59□□□□□ -0.23
KDM2A-204ENST00000524657 MYT1LQ9UL68 1186 aa13.57□□□□□ -0.24
KDM2A-204ENST00000524657 NOP58Q9Y2X3 529 aaKnown RBP13.57□□□□□ -0.24
KDM2A-204ENST00000524657 RTL5Q5HYW3 569 aaPredicted RBP13.57□□□□□ -0.24
KDM2A-204ENST00000524657 PPP1R15AO75807 674 aaPredicted RBP13.54□□□□□ -0.24
KDM2A-204ENST00000524657 EEA1Q15075 1411 aa13.54□□□□□ -0.24
KDM2A-204ENST00000524657 CCER2I3L3R5 266 aa13.5□□□□□ -0.25
KDM2A-204ENST00000524657 CEP164Q9UPV0 1460 aa13.49□□□□□ -0.25
KDM2A-204ENST00000524657 SENP3-EIF4A1A0A087X0R7 540 aa13.49□□□□□ -0.25
KDM2A-204ENST00000524657 PPP4R2Q9NY27 417 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 115.8 ms