RNA–Protein interactions for RNA: ENST00000521835.1

DENND3-217, Transcript of DENN domain containing 3, humanhuman

TSL 1 (best)

Gene DENND3, Length 3,157 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND3-217ENST00000521835 NISCHQ9Y2I1 1504 aa24.55■■□□□ 1.52
DENND3-217ENST00000521835 SHROOM4Q9ULL8 1493 aa21.8■■□□□ 1.08
DENND3-217ENST00000521835 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
DENND3-217ENST00000521835 SUPT5HO00267 1087 aaKnown RBP21.39■■□□□ 1.02
DENND3-217ENST00000521835 ZCCHC6Q5VYS8 1495 aaKnown RBP20.7■□□□□ 0.9
DENND3-217ENST00000521835 CCDC180Q9P1Z9 1646 aa20.52■□□□□ 0.88
DENND3-217ENST00000521835 CHIC1Q5VXU3 224 aa20.39■□□□□ 0.85
DENND3-217ENST00000521835 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
DENND3-217ENST00000521835 PCGF6Q9BYE7 350 aa20.11■□□□□ 0.81
DENND3-217ENST00000521835 LOC105371045A0A1W2PR82 267 aa20.09■□□□□ 0.81
DENND3-217ENST00000521835 EHMT2Q96KQ7 1210 aa20.07■□□□□ 0.8
DENND3-217ENST00000521835 FAM9AQ8IZU1 332 aaPredicted RBP19.91■□□□□ 0.78
DENND3-217ENST00000521835 SCRIBQ14160 1630 aa19.85■□□□□ 0.77
DENND3-217ENST00000521835 ABCC9O60706 1549 aa19.81■□□□□ 0.76
DENND3-217ENST00000521835 PPARGC1BQ86YN6 1023 aaKnown RBP19.77■□□□□ 0.76
DENND3-217ENST00000521835 HRCP23327 699 aa19.77■□□□□ 0.76
DENND3-217ENST00000521835 DCAF1Q9Y4B6 1507 aa19.76■□□□□ 0.75
DENND3-217ENST00000521835 TRIM41Q8WV44 630 aa19.69■□□□□ 0.74
DENND3-217ENST00000521835 RSF1Q96T23 1441 aaPredicted RBP19.57■□□□□ 0.72
DENND3-217ENST00000521835 PELP1Q8IZL8 1130 aaKnown RBP19.55■□□□□ 0.72
DENND3-217ENST00000521835 RB1CC1Q8TDY2 1594 aa19.43■□□□□ 0.7
DENND3-217ENST00000521835 CECR2Q9BXF3 1484 aa19.42■□□□□ 0.7
DENND3-217ENST00000521835 TRIM26Q12899 539 aaPredicted RBP19.37■□□□□ 0.69
DENND3-217ENST00000521835 TTBK1Q5TCY1 1321 aaPredicted RBP19.36■□□□□ 0.69
DENND3-217ENST00000521835 MROH2BQ7Z745 1585 aa19.25■□□□□ 0.67
DENND3-217ENST00000521835 PABPN1Q86U42 306 aaKnown RBP eCLIP19.18■□□□□ 0.66
DENND3-217ENST00000521835 WIZO95785 1651 aa19.14■□□□□ 0.65
DENND3-217ENST00000521835 NACADO15069 1562 aa19.13■□□□□ 0.65
DENND3-217ENST00000521835 MYT1Q01538 1121 aa19.11■□□□□ 0.65
DENND3-217ENST00000521835 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.95■□□□□ 0.62
DENND3-217ENST00000521835 RANGAP1P46060 587 aaPredicted RBP18.93■□□□□ 0.62
DENND3-217ENST00000521835 ABCC8Q09428 1581 aa18.9■□□□□ 0.62
DENND3-217ENST00000521835 UBTFP17480 764 aaKnown RBP18.89■□□□□ 0.62
DENND3-217ENST00000521835 CCER1Q8TC90 406 aaPredicted RBP18.85■□□□□ 0.61
DENND3-217ENST00000521835 BAZ1AQ9NRL2 1556 aaPredicted RBP18.83■□□□□ 0.61
DENND3-217ENST00000521835 ZEB1P37275 1124 aaPredicted RBP18.81■□□□□ 0.6
DENND3-217ENST00000521835 CCDC88BA6NC98 1476 aa18.79■□□□□ 0.6
DENND3-217ENST00000521835 SOGA1O94964 1423 aa18.74■□□□□ 0.59
DENND3-217ENST00000521835 SMARCA4P51532 1647 aa18.67■□□□□ 0.58
DENND3-217ENST00000521835 RUSC2Q8N2Y8 1516 aa18.66■□□□□ 0.58
DENND3-217ENST00000521835 TOP2AP11388 1531 aaKnown RBP18.65■□□□□ 0.58
DENND3-217ENST00000521835 CSRNP3Q8WYN3 585 aa18.64■□□□□ 0.57
DENND3-217ENST00000521835 SMARCA2P51531 1590 aa18.6■□□□□ 0.57
DENND3-217ENST00000521835 CEP162Q5TB80 1403 aa18.6■□□□□ 0.57
DENND3-217ENST00000521835 HNRNPUL2Q1KMD3 747 aaKnown RBP18.57■□□□□ 0.56
DENND3-217ENST00000521835 UNC13AQ9UPW8 1703 aa18.56■□□□□ 0.56
DENND3-217ENST00000521835 EIF4G1Q04637 1599 aaKnown RBP18.52■□□□□ 0.56
DENND3-217ENST00000521835 WRNQ14191 1432 aaPredicted RBP eCLIP18.47■□□□□ 0.55
DENND3-217ENST00000521835 APLP2Q06481 763 aa18.42■□□□□ 0.54
DENND3-217ENST00000521835 BICRAQ9NZM4 1560 aa18.4■□□□□ 0.54
DENND3-217ENST00000521835 TNIKQ9UKE5 1360 aa18.4■□□□□ 0.54
DENND3-217ENST00000521835 SCAF1Q9H7N4 1312 aaKnown RBP18.36■□□□□ 0.53
DENND3-217ENST00000521835 DIEXFQ68CQ4 756 aaKnown RBP18.36■□□□□ 0.53
DENND3-217ENST00000521835 BAZ1BQ9UIG0 1483 aaKnown RBP18.35■□□□□ 0.53
DENND3-217ENST00000521835 GOLGA3Q08378 1498 aa18.34■□□□□ 0.53
DENND3-217ENST00000521835 YTHDC1Q96MU7 727 aaKnown RBP18.33■□□□□ 0.53
DENND3-217ENST00000521835 ATAD2BQ9ULI0 1458 aa18.29■□□□□ 0.52
DENND3-217ENST00000521835 SYNJ1O43426 1573 aa18.29■□□□□ 0.52
DENND3-217ENST00000521835 CLIP1P30622 1438 aa18.28■□□□□ 0.52
DENND3-217ENST00000521835 EEA1Q15075 1411 aa18.25■□□□□ 0.51
DENND3-217ENST00000521835 ITGAEP38570 1179 aa18.23■□□□□ 0.51
DENND3-217ENST00000521835 RAPGEF2Q9Y4G8 1499 aa18.22■□□□□ 0.51
DENND3-217ENST00000521835 NEUROD1Q13562 356 aa18.22■□□□□ 0.51
DENND3-217ENST00000521835 CEP164Q9UPV0 1460 aa18.2■□□□□ 0.5
DENND3-217ENST00000521835 ATP1B4Q9UN42 357 aaPredicted RBP18.12■□□□□ 0.49
DENND3-217ENST00000521835 ACIN1Q9UKV3 1341 aaKnown RBP18.1■□□□□ 0.49
DENND3-217ENST00000521835 ZNF316A6NFI3 1004 aaPredicted RBP18.1■□□□□ 0.49
DENND3-217ENST00000521835 GTF3C3Q9Y5Q9 886 aa18.09■□□□□ 0.49
DENND3-217ENST00000521835 CENPBP07199 599 aaPredicted RBP18.06■□□□□ 0.48
DENND3-217ENST00000521835 VPS8Q8N3P4 1428 aa18.06■□□□□ 0.48
DENND3-217ENST00000521835 KANK4Q5T7N3 995 aaPredicted RBP18.05■□□□□ 0.48
DENND3-217ENST00000521835 PEG3Q9GZU2 1588 aa18.03■□□□□ 0.48
DENND3-217ENST00000521835 P3H3Q8IVL6 736 aa18.03■□□□□ 0.48
DENND3-217ENST00000521835 MIER1Q8N108 512 aa17.99■□□□□ 0.47
DENND3-217ENST00000521835 KIF21BO75037 1637 aa17.96■□□□□ 0.47
DENND3-217ENST00000521835 TOP2BQ02880 1626 aa17.89■□□□□ 0.45
DENND3-217ENST00000521835 KIF27Q86VH2 1401 aa17.88■□□□□ 0.45
DENND3-217ENST00000521835 CUX1P39880 1505 aa17.87■□□□□ 0.45
DENND3-217ENST00000521835 FAM50AQ14320 339 aaKnown RBP17.85■□□□□ 0.45
DENND3-217ENST00000521835 ARAP1Q96P48 1450 aa17.84■□□□□ 0.45
DENND3-217ENST00000521835 CUX2O14529 1486 aa17.83■□□□□ 0.44
DENND3-217ENST00000521835 PRKCSHP14314 528 aaPredicted RBP17.82■□□□□ 0.44
DENND3-217ENST00000521835 NCAPD3P42695 1498 aa17.8■□□□□ 0.44
DENND3-217ENST00000521835 PRXQ9BXM0 1461 aa17.79■□□□□ 0.44
DENND3-217ENST00000521835 BCL11AQ9H165 835 aa17.73■□□□□ 0.43
DENND3-217ENST00000521835 DHX57Q6P158 1386 aaKnown RBP17.72■□□□□ 0.43
DENND3-217ENST00000521835 CFTRP13569 1480 aa17.72■□□□□ 0.43
DENND3-217ENST00000521835 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.43
DENND3-217ENST00000521835 ARHGAP35Q9NRY4 1499 aa17.69■□□□□ 0.42
DENND3-217ENST00000521835 CARMIL1Q5VZK9 1371 aa17.69■□□□□ 0.42
DENND3-217ENST00000521835 HMGXB3Q12766 1538 aa17.69■□□□□ 0.42
DENND3-217ENST00000521835 CCNB3Q8WWL7 1395 aa17.68■□□□□ 0.42
DENND3-217ENST00000521835 HIRIP3Q9BW71 556 aaPredicted RBP17.68■□□□□ 0.42
DENND3-217ENST00000521835 IGF1RP08069 1367 aa17.68■□□□□ 0.42
DENND3-217ENST00000521835 ARID3CA6NKF2 412 aa17.66■□□□□ 0.42
DENND3-217ENST00000521835 ERICH3Q5RHP9 1530 aa17.66■□□□□ 0.42
DENND3-217ENST00000521835 CADPSQ9ULU8 1353 aa17.66■□□□□ 0.42
DENND3-217ENST00000521835 FGD5Q6ZNL6 1462 aa17.65■□□□□ 0.42
DENND3-217ENST00000521835 SIN3AQ96ST3 1273 aa17.64■□□□□ 0.41
DENND3-217ENST00000521835 RAD54L2Q9Y4B4 1467 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms