RNA–Protein interactions for RNA: ENST00000520047.1

RUNX1T1-222, Transcript of RUNX1 translocation partner 1, human

TSL 2

Gene RUNX1T1, Length 1,872 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RUNX1T1-222	ENST00000520047	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.71	■□□□□ 0.75
RUNX1T1-222	ENST00000520047	CHIC1	Q5VXU3	224 aa		18.71	■□□□□ 0.59
RUNX1T1-222	ENST00000520047	SENP3	Q9H4L4	574 aa	Predicted RBP	17.12	■□□□□ 0.33
RUNX1T1-222	ENST00000520047	PHF23	Q9BUL5	403 aa	Predicted RBP	16.76	■□□□□ 0.27
RUNX1T1-222	ENST00000520047	FOXD1	Q16676	465 aa		15.84	■□□□□ 0.13
RUNX1T1-222	ENST00000520047	MSH5	O43196	834 aa		15.14	■□□□□ 0.01
RUNX1T1-222	ENST00000520047	POTED	Q86YR6	584 aa		15.14	■□□□□ 0.01
RUNX1T1-222	ENST00000520047	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.83	□□□□□ -0.04
RUNX1T1-222	ENST00000520047	PLPPR3	Q6T4P5	718 aa		14.8	□□□□□ -0.04
RUNX1T1-222	ENST00000520047	ADRA2B	P18089	450 aa		14.48	□□□□□ -0.09
RUNX1T1-222	ENST00000520047	PPP6R1	Q9UPN7	881 aa		14.48	□□□□□ -0.09
RUNX1T1-222	ENST00000520047	NISCH	Q9Y2I1	1504 aa		14.33	□□□□□ -0.12
RUNX1T1-222	ENST00000520047	SCAF1	Q9H7N4	1312 aa	Known RBP	13.54	□□□□□ -0.24
RUNX1T1-222	ENST00000520047	DMRT2	Q9Y5R5	561 aa		13.45	□□□□□ -0.26
RUNX1T1-222	ENST00000520047	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.36	□□□□□ -0.27
RUNX1T1-222	ENST00000520047	CACNB1	Q02641	598 aa	Predicted RBP	13.16	□□□□□ -0.3
RUNX1T1-222	ENST00000520047	DCAF8L1	A6NGE4	600 aa		13.02	□□□□□ -0.32
RUNX1T1-222	ENST00000520047	PPP4R3CP	Q6ZMV5	832 aa		12.87	□□□□□ -0.35
RUNX1T1-222	ENST00000520047	HOXD11	P31277	338 aa	Predicted RBP	12.82	□□□□□ -0.36
RUNX1T1-222	ENST00000520047	RNF39	Q9H2S5	420 aa		12.76	□□□□□ -0.37
RUNX1T1-222	ENST00000520047	CNKSR2	Q8WXI2	1034 aa		12.75	□□□□□ -0.37
RUNX1T1-222	ENST00000520047	CCDC180	Q9P1Z9	1646 aa		12.74	□□□□□ -0.37
RUNX1T1-222	ENST00000520047	RNF216	Q9NWF9	866 aa	Predicted RBP	12.7	□□□□□ -0.38
RUNX1T1-222	ENST00000520047	C1QBP	Q07021	282 aa	Known RBP	12.66	□□□□□ -0.38
RUNX1T1-222	ENST00000520047	ABCC9	O60706	1549 aa		12.66	□□□□□ -0.38
RUNX1T1-222	ENST00000520047	DNAJC5B	Q9UF47	199 aa		12.53	□□□□□ -0.4
RUNX1T1-222	ENST00000520047	NCBP3	Q53F19	620 aa	Known RBP	12.44	□□□□□ -0.42
RUNX1T1-222	ENST00000520047	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
RUNX1T1-222	ENST00000520047	DCAF8L2	P0C7V8	631 aa		12.23	□□□□□ -0.45
RUNX1T1-222	ENST00000520047	RB1CC1	Q8TDY2	1594 aa		12.12	□□□□□ -0.47
RUNX1T1-222	ENST00000520047	NACAD	O15069	1562 aa		12.07	□□□□□ -0.48
RUNX1T1-222	ENST00000520047	NPM3	O75607	178 aa	Known RBP	12.04	□□□□□ -0.48
RUNX1T1-222	ENST00000520047	CAPN15	O75808	1086 aa		11.93	□□□□□ -0.5
RUNX1T1-222	ENST00000520047	MYO15B	Q96JP2	1530 aa		11.93	□□□□□ -0.5
RUNX1T1-222	ENST00000520047		U3KPZ7	1027 aa	Predicted RBP	11.89	□□□□□ -0.51
RUNX1T1-222	ENST00000520047	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.89	□□□□□ -0.51
RUNX1T1-222	ENST00000520047	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.87	□□□□□ -0.51
RUNX1T1-222	ENST00000520047	POTEH	Q6S545	545 aa		11.85	□□□□□ -0.51
RUNX1T1-222	ENST00000520047	APLP2	Q06481	763 aa		11.85	□□□□□ -0.51
RUNX1T1-222	ENST00000520047	DCAF1	Q9Y4B6	1507 aa		11.84	□□□□□ -0.51
RUNX1T1-222	ENST00000520047	DSG3	P32926	999 aa		11.83	□□□□□ -0.52
RUNX1T1-222	ENST00000520047	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.78	□□□□□ -0.52
RUNX1T1-222	ENST00000520047	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.7	□□□□□ -0.54
RUNX1T1-222	ENST00000520047	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.7	□□□□□ -0.54
RUNX1T1-222	ENST00000520047	UNC13A	Q9UPW8	1703 aa		11.69	□□□□□ -0.54
RUNX1T1-222	ENST00000520047	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.68	□□□□□ -0.54
RUNX1T1-222	ENST00000520047	SCRIB	Q14160	1630 aa		11.66	□□□□□ -0.54
RUNX1T1-222	ENST00000520047	BICRA	Q9NZM4	1560 aa		11.65	□□□□□ -0.54
RUNX1T1-222	ENST00000520047	TRH	P20396	242 aa	Predicted RBP	11.64	□□□□□ -0.55
RUNX1T1-222	ENST00000520047	SHROOM4	Q9ULL8	1493 aa		11.6	□□□□□ -0.55
RUNX1T1-222	ENST00000520047	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.55	□□□□□ -0.56
RUNX1T1-222	ENST00000520047	ABCB7	O75027	752 aa		11.54	□□□□□ -0.56
RUNX1T1-222	ENST00000520047	SLC4A2	P04920	1241 aa		11.51	□□□□□ -0.57
RUNX1T1-222	ENST00000520047	KCNA4	P22459	653 aa		11.49	□□□□□ -0.57
RUNX1T1-222	ENST00000520047	RBM42	Q9BTD8	480 aa	Known RBP	11.49	□□□□□ -0.57
RUNX1T1-222	ENST00000520047	EIF4G1	Q04637	1599 aa	Known RBP	11.41	□□□□□ -0.58
RUNX1T1-222	ENST00000520047	CECR2	Q9BXF3	1484 aa		11.39	□□□□□ -0.59
RUNX1T1-222	ENST00000520047	CC2D2A	Q9P2K1	1620 aa		11.39	□□□□□ -0.59
RUNX1T1-222	ENST00000520047	MYCN	P04198	464 aa	Predicted RBP	11.27	□□□□□ -0.61
RUNX1T1-222	ENST00000520047	CHRDL2	Q6WN34	429 aa		11.23	□□□□□ -0.61
RUNX1T1-222	ENST00000520047	POLA2	Q14181	598 aa		11.23	□□□□□ -0.61
RUNX1T1-222	ENST00000520047	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.15	□□□□□ -0.63
RUNX1T1-222	ENST00000520047	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	11.14	□□□□□ -0.63
RUNX1T1-222	ENST00000520047	NCAPD3	P42695	1498 aa		11.14	□□□□□ -0.63
RUNX1T1-222	ENST00000520047	SMARCA2	P51531	1590 aa		11.13	□□□□□ -0.63
RUNX1T1-222	ENST00000520047	ATAD2B	Q9ULI0	1458 aa		11.12	□□□□□ -0.63
RUNX1T1-222	ENST00000520047	SMARCA4	P51532	1647 aa		11.12	□□□□□ -0.63
RUNX1T1-222	ENST00000520047	AKT1S1	Q96B36	256 aa		11.08	□□□□□ -0.64
RUNX1T1-222	ENST00000520047	BAZ1B	Q9UIG0	1483 aa	Known RBP	11.06	□□□□□ -0.64
RUNX1T1-222	ENST00000520047	HMGXB3	Q12766	1538 aa		11.04	□□□□□ -0.64
RUNX1T1-222	ENST00000520047	MROH2B	Q7Z745	1585 aa		11.03	□□□□□ -0.64
RUNX1T1-222	ENST00000520047	PEG3	Q9GZU2	1588 aa		10.99	□□□□□ -0.65
RUNX1T1-222	ENST00000520047	SP7	Q8TDD2	431 aa	Predicted RBP	10.98	□□□□□ -0.65
RUNX1T1-222	ENST00000520047	ERCC6	Q03468	1493 aa		10.98	□□□□□ -0.65
RUNX1T1-222	ENST00000520047	FOXD4L1	Q9NU39	408 aa		10.94	□□□□□ -0.66
RUNX1T1-222	ENST00000520047	REM2	Q8IYK8	340 aa	Predicted RBP	10.91	□□□□□ -0.66
RUNX1T1-222	ENST00000520047	SLC4A1AP	Q9BWU0	796 aa	Known RBP	10.91	□□□□□ -0.66
RUNX1T1-222	ENST00000520047	RSF1	Q96T23	1441 aa	Predicted RBP	10.9	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	WIZ	O95785	1651 aa		10.89	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	NES	P48681	1621 aa		10.88	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	PDS5B	Q9NTI5	1447 aa		10.87	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	PIP4P2	Q8N4L2	257 aa		10.85	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	CADPS	Q9ULU8	1353 aa		10.85	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	LAMC3	Q9Y6N6	1575 aa		10.85	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	HAX1	O00165	279 aa		10.85	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	OSCAR	Q8IYS5	282 aa		10.84	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	CUX2	O14529	1486 aa		10.84	□□□□□ -0.67
RUNX1T1-222	ENST00000520047	ATF5	Q9Y2D1	282 aa	Predicted RBP	10.81	□□□□□ -0.68
RUNX1T1-222	ENST00000520047	TOP2A	P11388	1531 aa	Known RBP	10.79	□□□□□ -0.68
RUNX1T1-222	ENST00000520047	PITPNM1	O00562	1244 aa		10.76	□□□□□ -0.69
RUNX1T1-222	ENST00000520047	FXR2	P51116	673 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
RUNX1T1-222	ENST00000520047	FBLN2	P98095	1184 aa		10.72	□□□□□ -0.69
RUNX1T1-222	ENST00000520047	CFTR	P13569	1480 aa		10.72	□□□□□ -0.69
RUNX1T1-222	ENST00000520047	CEP164	Q9UPV0	1460 aa		10.71	□□□□□ -0.69
RUNX1T1-222	ENST00000520047	FANCD2	Q9BXW9	1451 aa		10.7	□□□□□ -0.7
RUNX1T1-222	ENST00000520047	MRC2	Q9UBG0	1479 aa		10.7	□□□□□ -0.7
RUNX1T1-222	ENST00000520047	ATXN8OS	P0DMR3	200 aa		10.7	□□□□□ -0.7
RUNX1T1-222	ENST00000520047	KIF21A	Q7Z4S6	1674 aa		10.69	□□□□□ -0.7
RUNX1T1-222	ENST00000520047	CCDC88B	A6NC98	1476 aa		10.69	□□□□□ -0.7
RUNX1T1-222	ENST00000520047	SPDYE2B	A6NHP3	402 aa		10.68	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms