RNA–Protein interactions for RNA: ENST00000510906.5

PDPN-209, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 786 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-209ENST00000510906 AEBP2Q6ZN18 517 aaPredicted RBP25.04■■□□□ 1.6
PDPN-209ENST00000510906 CHIC1Q5VXU3 224 aa25■■□□□ 1.59
PDPN-209ENST00000510906 PHF23Q9BUL5 403 aaPredicted RBP22.06■■□□□ 1.12
PDPN-209ENST00000510906 NISCHQ9Y2I1 1504 aa21.17■□□□□ 0.98
PDPN-209ENST00000510906 SENP3Q9H4L4 574 aaPredicted RBP21.13■□□□□ 0.97
PDPN-209ENST00000510906 PLPPR3Q6T4P5 718 aa20.53■□□□□ 0.88
PDPN-209ENST00000510906 FOXD1Q16676 465 aa19.54■□□□□ 0.72
PDPN-209ENST00000510906 PPP6R1Q9UPN7 881 aa19.25■□□□□ 0.67
PDPN-209ENST00000510906 ADRA2BP18089 450 aa19.22■□□□□ 0.67
PDPN-209ENST00000510906 CCDC180Q9P1Z9 1646 aa18.84■□□□□ 0.61
PDPN-209ENST00000510906 ABCC9O60706 1549 aa18.74■□□□□ 0.59
PDPN-209ENST00000510906 PIAS4Q8N2W9 510 aaPredicted RBP18.53■□□□□ 0.56
PDPN-209ENST00000510906 KCNA4P22459 653 aa18.39■□□□□ 0.53
PDPN-209ENST00000510906 DNAJC5BQ9UF47 199 aa18.32■□□□□ 0.52
PDPN-209ENST00000510906 PPP4R3CPQ6ZMV5 832 aa18.15■□□□□ 0.5
PDPN-209ENST00000510906 RB1CC1Q8TDY2 1594 aa17.87■□□□□ 0.45
PDPN-209ENST00000510906 DCAF8L2P0C7V8 631 aa17.82■□□□□ 0.44
PDPN-209ENST00000510906 NCBP3Q53F19 620 aaKnown RBP17.81■□□□□ 0.44
PDPN-209ENST00000510906 NACADO15069 1562 aa17.8■□□□□ 0.44
PDPN-209ENST00000510906 MSH5O43196 834 aa17.79■□□□□ 0.44
PDPN-209ENST00000510906 EHMT2Q96KQ7 1210 aa17.69■□□□□ 0.42
PDPN-209ENST00000510906 DNAJC5Q9H3Z4 198 aa17.63■□□□□ 0.41
PDPN-209ENST00000510906 MYO15BQ96JP2 1530 aa17.62■□□□□ 0.41
PDPN-209ENST00000510906 NPM3O75607 178 aaKnown RBP17.61■□□□□ 0.41
PDPN-209ENST00000510906 ZCCHC6Q5VYS8 1495 aaKnown RBP17.59■□□□□ 0.41
PDPN-209ENST00000510906 SCAF1Q9H7N4 1312 aaKnown RBP17.58■□□□□ 0.4
PDPN-209ENST00000510906 SLC4A1APQ9BWU0 796 aaKnown RBP17.58■□□□□ 0.4
PDPN-209ENST00000510906 CNKSR2Q8WXI2 1034 aa17.53■□□□□ 0.4
PDPN-209ENST00000510906 PABPN1Q86U42 306 aaKnown RBP eCLIP17.51■□□□□ 0.39
PDPN-209ENST00000510906 DCAF1Q9Y4B6 1507 aa17.47■□□□□ 0.39
PDPN-209ENST00000510906 UNC13AQ9UPW8 1703 aa17.41■□□□□ 0.38
PDPN-209ENST00000510906 BICRAQ9NZM4 1560 aa17.37■□□□□ 0.37
PDPN-209ENST00000510906 CSRNP3Q8WYN3 585 aa17.32■□□□□ 0.36
PDPN-209ENST00000510906 MAPK8IP2Q13387 824 aaPredicted RBP17.26■□□□□ 0.35
PDPN-209ENST00000510906 SCRIBQ14160 1630 aa17.24■□□□□ 0.35
PDPN-209ENST00000510906 SHROOM4Q9ULL8 1493 aa17.12■□□□□ 0.33
PDPN-209ENST00000510906 RNF216Q9NWF9 866 aaPredicted RBP17.07■□□□□ 0.32
PDPN-209ENST00000510906 ZBTB22O15209 634 aa16.98■□□□□ 0.31
PDPN-209ENST00000510906 DMRT2Q9Y5R5 561 aa16.98■□□□□ 0.31
PDPN-209ENST00000510906 EIF4G1Q04637 1599 aaKnown RBP16.92■□□□□ 0.3
PDPN-209ENST00000510906 CC2D2AQ9P2K1 1620 aa16.89■□□□□ 0.29
PDPN-209ENST00000510906 HOXD11P31277 338 aaPredicted RBP16.88■□□□□ 0.29
PDPN-209ENST00000510906 CECR2Q9BXF3 1484 aa16.85■□□□□ 0.29
PDPN-209ENST00000510906 FOXD4L1Q9NU39 408 aa16.76■□□□□ 0.27
PDPN-209ENST00000510906 SLC4A2P04920 1241 aa16.51■□□□□ 0.23
PDPN-209ENST00000510906 NCAPD3P42695 1498 aa16.46■□□□□ 0.23
PDPN-209ENST00000510906 SMARCA4P51532 1647 aa16.45■□□□□ 0.22
PDPN-209ENST00000510906 ATAD2BQ9ULI0 1458 aa16.45■□□□□ 0.22
PDPN-209ENST00000510906 BAZ1AQ9NRL2 1556 aaPredicted RBP16.4■□□□□ 0.22
PDPN-209ENST00000510906 SMARCA2P51531 1590 aa16.38■□□□□ 0.21
PDPN-209ENST00000510906 MROH2BQ7Z745 1585 aa16.34■□□□□ 0.21
PDPN-209ENST00000510906 HMGXB3Q12766 1538 aa16.33■□□□□ 0.2
PDPN-209ENST00000510906 BAZ1BQ9UIG0 1483 aaKnown RBP16.29■□□□□ 0.2
PDPN-209ENST00000510906 PEG3Q9GZU2 1588 aa16.28■□□□□ 0.2
PDPN-209ENST00000510906 MYCNP04198 464 aaPredicted RBP16.25■□□□□ 0.19
PDPN-209ENST00000510906 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
PDPN-209ENST00000510906 ATXN8OSP0DMR3 200 aa16.17■□□□□ 0.18
PDPN-209ENST00000510906 NESP48681 1621 aa16.16■□□□□ 0.18
PDPN-209ENST00000510906 ERCC6Q03468 1493 aa16.15■□□□□ 0.18
PDPN-209ENST00000510906 WIZO95785 1651 aa16.11■□□□□ 0.17
PDPN-209ENST00000510906 RSF1Q96T23 1441 aaPredicted RBP16.08■□□□□ 0.16
PDPN-209ENST00000510906 DCAF8L1A6NGE4 600 aa16.05■□□□□ 0.16
PDPN-209ENST00000510906 CUX2O14529 1486 aa16.03■□□□□ 0.16
PDPN-209ENST00000510906 LAMC3Q9Y6N6 1575 aa16.02■□□□□ 0.16
PDPN-209ENST00000510906 CADPSQ9ULU8 1353 aa15.98■□□□□ 0.15
PDPN-209ENST00000510906 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.96■□□□□ 0.15
PDPN-209ENST00000510906 PDS5BQ9NTI5 1447 aa15.95■□□□□ 0.14
PDPN-209ENST00000510906 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
PDPN-209ENST00000510906 THOC2Q8NI27 1593 aaKnown RBP15.91■□□□□ 0.14
PDPN-209ENST00000510906 KIF21AQ7Z4S6 1674 aa15.89■□□□□ 0.13
PDPN-209ENST00000510906 U3KPZ7 1027 aaPredicted RBP15.86■□□□□ 0.13
PDPN-209ENST00000510906 CFTRP13569 1480 aa15.84■□□□□ 0.13
PDPN-209ENST00000510906 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.82■□□□□ 0.12
PDPN-209ENST00000510906 HNRNPUL2Q1KMD3 747 aaKnown RBP15.82■□□□□ 0.12
PDPN-209ENST00000510906 MRC2Q9UBG0 1479 aa15.81■□□□□ 0.12
PDPN-209ENST00000510906 FANCD2Q9BXW9 1451 aa15.79■□□□□ 0.12
PDPN-209ENST00000510906 SAMD1Q6SPF0 538 aaPredicted RBP15.79■□□□□ 0.12
PDPN-209ENST00000510906 CEP164Q9UPV0 1460 aa15.78■□□□□ 0.12
PDPN-209ENST00000510906 CCDC88BA6NC98 1476 aa15.78■□□□□ 0.12
PDPN-209ENST00000510906 ATF5Q9Y2D1 282 aaPredicted RBP15.77■□□□□ 0.12
PDPN-209ENST00000510906 WDR62O43379 1518 aa15.74■□□□□ 0.11
PDPN-209ENST00000510906 URB2Q14146 1524 aaKnown RBP15.66■□□□□ 0.1
PDPN-209ENST00000510906 PRDM2Q13029 1718 aa15.58■□□□□ 0.08
PDPN-209ENST00000510906 SUPT5HO00267 1087 aaKnown RBP15.55■□□□□ 0.08
PDPN-209ENST00000510906 FKBP8Q14318 412 aa15.55■□□□□ 0.08
PDPN-209ENST00000510906 TOPBP1Q92547 1522 aa15.52■□□□□ 0.07
PDPN-209ENST00000510906 APLP2Q06481 763 aa15.5■□□□□ 0.07
PDPN-209ENST00000510906 ABCC8Q09428 1581 aa15.46■□□□□ 0.07
PDPN-209ENST00000510906 IFT140Q96RY7 1462 aa15.46■□□□□ 0.06
PDPN-209ENST00000510906 DNMBPQ6XZF7 1577 aa15.45■□□□□ 0.06
PDPN-209ENST00000510906 ZNF608Q9ULD9 1512 aaPredicted RBP15.44■□□□□ 0.06
PDPN-209ENST00000510906 ZNF219Q9P2Y4 722 aaPredicted RBP15.44■□□□□ 0.06
PDPN-209ENST00000510906 POLA1P09884 1462 aaPredicted RBP15.38■□□□□ 0.05
PDPN-209ENST00000510906 OSCARQ8IYS5 282 aa15.35■□□□□ 0.05
PDPN-209ENST00000510906 TARBP1Q13395 1621 aaKnown RBP15.34■□□□□ 0.05
PDPN-209ENST00000510906 RAD54L2Q9Y4B4 1467 aa15.33■□□□□ 0.05
PDPN-209ENST00000510906 CUX1P39880 1505 aa15.33■□□□□ 0.05
PDPN-209ENST00000510906 RNF39Q9H2S5 420 aa15.33■□□□□ 0.04
PDPN-209ENST00000510906 AQRO60306 1485 aaKnown RBP eCLIP15.33■□□□□ 0.04
PDPN-209ENST00000510906 EIF4G3O43432 1585 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms