RNA–Protein interactions for RNA: ENST00000507638.1

VEGFC-201, Transcript of vascular endothelial growth factor C, humanhuman

TSL 3

Gene VEGFC, Length 759 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFC-201ENST00000507638 AEBP2Q6ZN18 517 aaPredicted RBP21.31■■□□□ 1
VEGFC-201ENST00000507638 CHIC1Q5VXU3 224 aa20.9■□□□□ 0.94
VEGFC-201ENST00000507638 SENP3Q9H4L4 574 aaPredicted RBP18.36■□□□□ 0.53
VEGFC-201ENST00000507638 PHF23Q9BUL5 403 aaPredicted RBP18.22■□□□□ 0.51
VEGFC-201ENST00000507638 PLPPR3Q6T4P5 718 aa17.03■□□□□ 0.32
VEGFC-201ENST00000507638 FOXD1Q16676 465 aa16.86■□□□□ 0.29
VEGFC-201ENST00000507638 POTEDQ86YR6 584 aa16.24■□□□□ 0.19
VEGFC-201ENST00000507638 PPP6R1Q9UPN7 881 aa16.07■□□□□ 0.16
VEGFC-201ENST00000507638 ADRA2BP18089 450 aa16.06■□□□□ 0.16
VEGFC-201ENST00000507638 PIAS4Q8N2W9 510 aaPredicted RBP15.94■□□□□ 0.14
VEGFC-201ENST00000507638 MSH5O43196 834 aa15.81■□□□□ 0.12
VEGFC-201ENST00000507638 SCAF1Q9H7N4 1312 aaKnown RBP15.03■□□□□ -0
VEGFC-201ENST00000507638 PPP4R3CPQ6ZMV5 832 aa14.88□□□□□ -0.03
VEGFC-201ENST00000507638 NCBP3Q53F19 620 aaKnown RBP14.65□□□□□ -0.06
VEGFC-201ENST00000507638 CNKSR2Q8WXI2 1034 aa14.58□□□□□ -0.08
VEGFC-201ENST00000507638 DMRT2Q9Y5R5 561 aa14.58□□□□□ -0.08
VEGFC-201ENST00000507638 MAPK8IP2Q13387 824 aaPredicted RBP14.55□□□□□ -0.08
VEGFC-201ENST00000507638 KCNA4P22459 653 aa14.34□□□□□ -0.11
VEGFC-201ENST00000507638 RNF216Q9NWF9 866 aaPredicted RBP14.33□□□□□ -0.12
VEGFC-201ENST00000507638 HOXD11P31277 338 aaPredicted RBP14.26□□□□□ -0.13
VEGFC-201ENST00000507638 NPM3O75607 178 aaKnown RBP14.22□□□□□ -0.13
VEGFC-201ENST00000507638 DNAJC5BQ9UF47 199 aa14.22□□□□□ -0.13
VEGFC-201ENST00000507638 ABCC9O60706 1549 aa14.09□□□□□ -0.15
VEGFC-201ENST00000507638 NISCHQ9Y2I1 1504 aa14.04□□□□□ -0.16
VEGFC-201ENST00000507638 DCAF8L1A6NGE4 600 aa13.87□□□□□ -0.19
VEGFC-201ENST00000507638 DNAJC5Q9H3Z4 198 aa13.76□□□□□ -0.21
VEGFC-201ENST00000507638 SLC4A1APQ9BWU0 796 aaKnown RBP13.75□□□□□ -0.21
VEGFC-201ENST00000507638 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.58□□□□□ -0.24
VEGFC-201ENST00000507638 RNF39Q9H2S5 420 aa13.42□□□□□ -0.26
VEGFC-201ENST00000507638 SLC4A2P04920 1241 aa13.4□□□□□ -0.26
VEGFC-201ENST00000507638 FOXD4L1Q9NU39 408 aa13.38□□□□□ -0.27
VEGFC-201ENST00000507638 C1QBPQ07021 282 aaKnown RBP13.37□□□□□ -0.27
VEGFC-201ENST00000507638 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.35□□□□□ -0.27
VEGFC-201ENST00000507638 HNRNPUL2Q1KMD3 747 aaKnown RBP13.35□□□□□ -0.27
VEGFC-201ENST00000507638 CACNB1Q02641 598 aaPredicted RBP13.34□□□□□ -0.27
VEGFC-201ENST00000507638 APLP2Q06481 763 aa13.28□□□□□ -0.28
VEGFC-201ENST00000507638 MYCNP04198 464 aaPredicted RBP13.27□□□□□ -0.29
VEGFC-201ENST00000507638 U3KPZ7 1027 aaPredicted RBP13.27□□□□□ -0.29
VEGFC-201ENST00000507638 SAMD1Q6SPF0 538 aaPredicted RBP13.23□□□□□ -0.29
VEGFC-201ENST00000507638 ZBTB22O15209 634 aa13.13□□□□□ -0.31
VEGFC-201ENST00000507638 EHMT2Q96KQ7 1210 aa13.12□□□□□ -0.31
VEGFC-201ENST00000507638 CSRNP3Q8WYN3 585 aa13.06□□□□□ -0.32
VEGFC-201ENST00000507638 PABPN1Q86U42 306 aaKnown RBP eCLIP13.05□□□□□ -0.32
VEGFC-201ENST00000507638 ATXN8OSP0DMR3 200 aa13.04□□□□□ -0.32
VEGFC-201ENST00000507638 ZNF219Q9P2Y4 722 aaPredicted RBP12.97□□□□□ -0.33
VEGFC-201ENST00000507638 CCDC180Q9P1Z9 1646 aa12.95□□□□□ -0.34
VEGFC-201ENST00000507638 CAPN15O75808 1086 aa12.91□□□□□ -0.34
VEGFC-201ENST00000507638 RB1CC1Q8TDY2 1594 aa12.88□□□□□ -0.35
VEGFC-201ENST00000507638 SPINK5Q9NQ38 1064 aaPredicted RBP12.85□□□□□ -0.35
VEGFC-201ENST00000507638 TRHP20396 242 aaPredicted RBP12.79□□□□□ -0.36
VEGFC-201ENST00000507638 TRIM41Q8WV44 630 aa12.79□□□□□ -0.36
VEGFC-201ENST00000507638 CECR2Q9BXF3 1484 aa12.77□□□□□ -0.37
VEGFC-201ENST00000507638 DSG3P32926 999 aa12.71□□□□□ -0.37
VEGFC-201ENST00000507638 ATF5Q9Y2D1 282 aaPredicted RBP12.67□□□□□ -0.38
VEGFC-201ENST00000507638 CC2D2AQ9P2K1 1620 aa12.63□□□□□ -0.39
VEGFC-201ENST00000507638 UNC13AQ9UPW8 1703 aa12.62□□□□□ -0.39
VEGFC-201ENST00000507638 ZBTB12Q9Y330 459 aaPredicted RBP12.62□□□□□ -0.39
VEGFC-201ENST00000507638 POLA2Q14181 598 aa12.59□□□□□ -0.39
VEGFC-201ENST00000507638 BICRAQ9NZM4 1560 aa12.56□□□□□ -0.4
VEGFC-201ENST00000507638 ABCB7O75027 752 aa12.55□□□□□ -0.4
VEGFC-201ENST00000507638 NACADO15069 1562 aa12.53□□□□□ -0.4
VEGFC-201ENST00000507638 DCAF8L2P0C7V8 631 aa12.52□□□□□ -0.41
VEGFC-201ENST00000507638 POTEHQ6S545 545 aa12.5□□□□□ -0.41
VEGFC-201ENST00000507638 CUX2O14529 1486 aa12.47□□□□□ -0.41
VEGFC-201ENST00000507638 FBLN2P98095 1184 aa12.44□□□□□ -0.42
VEGFC-201ENST00000507638 EIF4G1Q04637 1599 aaKnown RBP12.33□□□□□ -0.44
VEGFC-201ENST00000507638 RBM42Q9BTD8 480 aaKnown RBP12.31□□□□□ -0.44
VEGFC-201ENST00000507638 ERCC6Q03468 1493 aa12.21□□□□□ -0.46
VEGFC-201ENST00000507638 SPDYE2BA6NHP3 402 aa12.17□□□□□ -0.46
VEGFC-201ENST00000507638 SPDYE6P0CI01 402 aa12.17□□□□□ -0.46
VEGFC-201ENST00000507638 MKRN4PQ13434 485 aaPredicted RBP12.17□□□□□ -0.46
VEGFC-201ENST00000507638 SPDYE2Q495Y8 402 aa12.17□□□□□ -0.46
VEGFC-201ENST00000507638 SHROOM4Q9ULL8 1493 aa12.16□□□□□ -0.46
VEGFC-201ENST00000507638 OSCARQ8IYS5 282 aa12.13□□□□□ -0.47
VEGFC-201ENST00000507638 AKT1S1Q96B36 256 aa12.06□□□□□ -0.48
VEGFC-201ENST00000507638 ZNF692Q9BU19 519 aaPredicted RBP12.03□□□□□ -0.48
VEGFC-201ENST00000507638 ILDR1Q86SU0 546 aaPredicted RBP11.99□□□□□ -0.49
VEGFC-201ENST00000507638 SSUH2Q9Y2M2 353 aa11.99□□□□□ -0.49
VEGFC-201ENST00000507638 SPDYE4A6NLX3 237 aa11.98□□□□□ -0.49
VEGFC-201ENST00000507638 MYO15BQ96JP2 1530 aa11.97□□□□□ -0.49
VEGFC-201ENST00000507638 SCRIBQ14160 1630 aa11.89□□□□□ -0.51
VEGFC-201ENST00000507638 REM2Q8IYK8 340 aaPredicted RBP11.85□□□□□ -0.51
VEGFC-201ENST00000507638 FKBP8Q14318 412 aa11.84□□□□□ -0.51
VEGFC-201ENST00000507638 SPDYE1Q8NFV5 336 aaPredicted RBP11.83□□□□□ -0.52
VEGFC-201ENST00000507638 NESP48681 1621 aa11.82□□□□□ -0.52
VEGFC-201ENST00000507638 STAG3Q9UJ98 1225 aa11.81□□□□□ -0.52
VEGFC-201ENST00000507638 PROM2Q8N271 834 aa11.8□□□□□ -0.52
VEGFC-201ENST00000507638 THOC2Q8NI27 1593 aaKnown RBP11.79□□□□□ -0.52
VEGFC-201ENST00000507638 RIMBP3CA6NJZ7 1639 aa11.74□□□□□ -0.53
VEGFC-201ENST00000507638 RIMBP3BA6NNM3 1639 aa11.74□□□□□ -0.53
VEGFC-201ENST00000507638 RIMBP3Q9UFD9 1639 aa11.74□□□□□ -0.53
VEGFC-201ENST00000507638 BAZ1AQ9NRL2 1556 aaPredicted RBP11.71□□□□□ -0.53
VEGFC-201ENST00000507638 CYB5RLQ6IPT4 315 aa11.71□□□□□ -0.53
VEGFC-201ENST00000507638 PITPNM1O00562 1244 aa11.68□□□□□ -0.54
VEGFC-201ENST00000507638 CHRDL2Q6WN34 429 aa11.68□□□□□ -0.54
VEGFC-201ENST00000507638 FBXO3Q9UK99 471 aa11.68□□□□□ -0.54
VEGFC-201ENST00000507638 SMARCA2P51531 1590 aa11.67□□□□□ -0.54
VEGFC-201ENST00000507638 CLEC11AQ9Y240 323 aa11.64□□□□□ -0.55
VEGFC-201ENST00000507638 NCAPD3P42695 1498 aa11.62□□□□□ -0.55
VEGFC-201ENST00000507638 PRR29P0C7W0 189 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms