RNA–Protein interactions for RNA: ENST00000507142.5

NEK1-203, Transcript of NIMA related kinase 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene NEK1, Length 5,556 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-203ENST00000507142 NISCHQ9Y2I1 1504 aa18.04■□□□□ 0.48
NEK1-203ENST00000507142 DCAF8L2P0C7V8 631 aa17.97■□□□□ 0.47
NEK1-203ENST00000507142 SHROOM4Q9ULL8 1493 aa16.45■□□□□ 0.22
NEK1-203ENST00000507142 SUPT5HO00267 1087 aaKnown RBP16.26■□□□□ 0.19
NEK1-203ENST00000507142 ABCC9O60706 1549 aa16.13■□□□□ 0.17
NEK1-203ENST00000507142 PABPN1Q86U42 306 aaKnown RBP eCLIP15.75■□□□□ 0.11
NEK1-203ENST00000507142 EHMT2Q96KQ7 1210 aa15.6■□□□□ 0.09
NEK1-203ENST00000507142 FAM9AQ8IZU1 332 aaPredicted RBP15.46■□□□□ 0.07
NEK1-203ENST00000507142 RANGAP1P46060 587 aaPredicted RBP15.22■□□□□ 0.03
NEK1-203ENST00000507142 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.03
NEK1-203ENST00000507142 APLP2Q06481 763 aa15.15■□□□□ 0.02
NEK1-203ENST00000507142 TRIM41Q8WV44 630 aa15.14■□□□□ 0.01
NEK1-203ENST00000507142 ATP1B4Q9UN42 357 aaPredicted RBP15.1■□□□□ 0.01
NEK1-203ENST00000507142 RB1CC1Q8TDY2 1594 aa15.03■□□□□ -0
NEK1-203ENST00000507142 TTBK1Q5TCY1 1321 aaPredicted RBP15.03■□□□□ -0
NEK1-203ENST00000507142 SCRIBQ14160 1630 aa15.02■□□□□ -0
NEK1-203ENST00000507142 UBTFP17480 764 aaKnown RBP14.95□□□□□ -0.02
NEK1-203ENST00000507142 ZCCHC6Q5VYS8 1495 aaKnown RBP14.87□□□□□ -0.03
NEK1-203ENST00000507142 FBLN2P98095 1184 aa14.86□□□□□ -0.03
NEK1-203ENST00000507142 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.83□□□□□ -0.04
NEK1-203ENST00000507142 HNRNPUL2Q1KMD3 747 aaKnown RBP14.83□□□□□ -0.04
NEK1-203ENST00000507142 NACADO15069 1562 aa14.82□□□□□ -0.04
NEK1-203ENST00000507142 MYT1LQ9UL68 1186 aa14.75□□□□□ -0.05
NEK1-203ENST00000507142 ERCC6Q03468 1493 aa14.48□□□□□ -0.09
NEK1-203ENST00000507142 BAZ1BQ9UIG0 1483 aaKnown RBP14.4□□□□□ -0.1
NEK1-203ENST00000507142 CHIC1Q5VXU3 224 aa14.37□□□□□ -0.11
NEK1-203ENST00000507142 NPM1P06748 294 aaKnown RBP eCLIP14.34□□□□□ -0.11
NEK1-203ENST00000507142 CHMP7Q8WUX9 453 aaPredicted RBP14.34□□□□□ -0.11
NEK1-203ENST00000507142 PPARGC1BQ86YN6 1023 aaKnown RBP14.33□□□□□ -0.11
NEK1-203ENST00000507142 DCAF1Q9Y4B6 1507 aa14.33□□□□□ -0.12
NEK1-203ENST00000507142 ARID3CA6NKF2 412 aa14.31□□□□□ -0.12
NEK1-203ENST00000507142 ITGAEP38570 1179 aa14.3□□□□□ -0.12
NEK1-203ENST00000507142 P3H3Q8IVL6 736 aa14.28□□□□□ -0.12
NEK1-203ENST00000507142 CECR2Q9BXF3 1484 aa14.28□□□□□ -0.12
NEK1-203ENST00000507142 LOC105371045A0A1W2PR82 267 aa14.23□□□□□ -0.13
NEK1-203ENST00000507142 PCGF6Q9BYE7 350 aa14.2□□□□□ -0.14
NEK1-203ENST00000507142 BAZ1AQ9NRL2 1556 aaPredicted RBP14.19□□□□□ -0.14
NEK1-203ENST00000507142 RSF1Q96T23 1441 aaPredicted RBP14.17□□□□□ -0.14
NEK1-203ENST00000507142 CSRNP3Q8WYN3 585 aa14.14□□□□□ -0.15
NEK1-203ENST00000507142 MYO15BQ96JP2 1530 aa14.13□□□□□ -0.15
NEK1-203ENST00000507142 FAM50AQ14320 339 aaKnown RBP14.09□□□□□ -0.15
NEK1-203ENST00000507142 PDS5BQ9NTI5 1447 aa14.08□□□□□ -0.15
NEK1-203ENST00000507142 PLPPR3Q6T4P5 718 aa14.08□□□□□ -0.16
NEK1-203ENST00000507142 SMARCA2P51531 1590 aa14.07□□□□□ -0.16
NEK1-203ENST00000507142 CDK11AQ9UQ88 783 aaPredicted RBP14.06□□□□□ -0.16
NEK1-203ENST00000507142 TRHP20396 242 aaPredicted RBP14.06□□□□□ -0.16
NEK1-203ENST00000507142 ESF1Q9H501 851 aaKnown RBP14.05□□□□□ -0.16
NEK1-203ENST00000507142 ZNF777Q9ULD5 760 aaPredicted RBP14.05□□□□□ -0.16
NEK1-203ENST00000507142 CCER1Q8TC90 406 aaPredicted RBP14.04□□□□□ -0.16
NEK1-203ENST00000507142 MROH2BQ7Z745 1585 aa13.96□□□□□ -0.17
NEK1-203ENST00000507142 TRIM52Q96A61 297 aa13.95□□□□□ -0.18
NEK1-203ENST00000507142 BCANQ96GW7 911 aa13.93□□□□□ -0.18
NEK1-203ENST00000507142 KCNH8Q96L42 1107 aa13.93□□□□□ -0.18
NEK1-203ENST00000507142 WRNQ14191 1432 aaPredicted RBP eCLIP13.92□□□□□ -0.18
NEK1-203ENST00000507142 ATAD2BQ9ULI0 1458 aa13.91□□□□□ -0.18
NEK1-203ENST00000507142 CADPSQ9ULU8 1353 aa13.9□□□□□ -0.18
NEK1-203ENST00000507142 DNAJC5BQ9UF47 199 aa13.88□□□□□ -0.19
NEK1-203ENST00000507142 POLR3GLQ9BT43 218 aa13.85□□□□□ -0.19
NEK1-203ENST00000507142 EIF4G1Q04637 1599 aaKnown RBP13.84□□□□□ -0.19
NEK1-203ENST00000507142 KIF27Q86VH2 1401 aa13.83□□□□□ -0.2
NEK1-203ENST00000507142 SLC4A1APQ9BWU0 796 aaKnown RBP13.82□□□□□ -0.2
NEK1-203ENST00000507142 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
NEK1-203ENST00000507142 CEP164Q9UPV0 1460 aa13.81□□□□□ -0.2
NEK1-203ENST00000507142 TDRD9Q8NDG6 1382 aaKnown RBP13.8□□□□□ -0.2
NEK1-203ENST00000507142 SOGA1O94964 1423 aa13.79□□□□□ -0.2
NEK1-203ENST00000507142 ARID4BQ4LE39 1312 aaPredicted RBP13.79□□□□□ -0.2
NEK1-203ENST00000507142 STAG3Q9UJ98 1225 aa13.79□□□□□ -0.2
NEK1-203ENST00000507142 SMARCA4P51532 1647 aa13.78□□□□□ -0.2
NEK1-203ENST00000507142 PLEKHD1A6NEE1 506 aa13.78□□□□□ -0.2
NEK1-203ENST00000507142 CUX2O14529 1486 aa13.77□□□□□ -0.2
NEK1-203ENST00000507142 OSCARQ8IYS5 282 aa13.75□□□□□ -0.21
NEK1-203ENST00000507142 CC2D2AQ9P2K1 1620 aa13.75□□□□□ -0.21
NEK1-203ENST00000507142 WIZO95785 1651 aa13.74□□□□□ -0.21
NEK1-203ENST00000507142 TRIM26Q12899 539 aaPredicted RBP13.73□□□□□ -0.21
NEK1-203ENST00000507142 FANCD2Q9BXW9 1451 aa13.72□□□□□ -0.21
NEK1-203ENST00000507142 CHGAP10645 457 aaKnown RBP13.72□□□□□ -0.21
NEK1-203ENST00000507142 TOP2AP11388 1531 aaKnown RBP13.71□□□□□ -0.21
NEK1-203ENST00000507142 CYB5RLQ6IPT4 315 aa13.69□□□□□ -0.22
NEK1-203ENST00000507142 NCAPD3P42695 1498 aa13.68□□□□□ -0.22
NEK1-203ENST00000507142 ZNF326Q5BKZ1 582 aaKnown RBP13.68□□□□□ -0.22
NEK1-203ENST00000507142 TSPY4P0CV99 314 aa13.68□□□□□ -0.22
NEK1-203ENST00000507142 TSPY10P0CW01 314 aa13.68□□□□□ -0.22
NEK1-203ENST00000507142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.67□□□□□ -0.22
NEK1-203ENST00000507142 MTUS2Q5JR59 1369 aa13.67□□□□□ -0.22
NEK1-203ENST00000507142 CARMIL1Q5VZK9 1371 aa13.67□□□□□ -0.22
NEK1-203ENST00000507142 CNGB1Q14028 1251 aaPredicted RBP13.64□□□□□ -0.23
NEK1-203ENST00000507142 ZEB1P37275 1124 aaPredicted RBP13.63□□□□□ -0.23
NEK1-203ENST00000507142 NEUROD1Q13562 356 aa13.62□□□□□ -0.23
NEK1-203ENST00000507142 CHIC2Q9UKJ5 165 aa13.62□□□□□ -0.23
NEK1-203ENST00000507142 EEA1Q15075 1411 aa13.6□□□□□ -0.23
NEK1-203ENST00000507142 CARMIL2Q6F5E8 1435 aa13.6□□□□□ -0.23
NEK1-203ENST00000507142 ABCC8Q09428 1581 aa13.57□□□□□ -0.24
NEK1-203ENST00000507142 CLIP1P30622 1438 aa13.57□□□□□ -0.24
NEK1-203ENST00000507142 NESP48681 1621 aa13.56□□□□□ -0.24
NEK1-203ENST00000507142 GOLGA3Q08378 1498 aa13.54□□□□□ -0.24
NEK1-203ENST00000507142 MLECQ14165 292 aa13.53□□□□□ -0.24
NEK1-203ENST00000507142 CFDP1Q9UEE9 299 aaPredicted RBP13.53□□□□□ -0.24
NEK1-203ENST00000507142 JPH4Q96JJ6 628 aa13.53□□□□□ -0.24
NEK1-203ENST00000507142 BICRAQ9NZM4 1560 aa13.51□□□□□ -0.25
NEK1-203ENST00000507142 SENP3Q9H4L4 574 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms