RNA–Protein interactions for RNA: ENST00000498020.1

HLA-DMB-262, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 4,569 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-262ENST00000498020 NISCHQ9Y2I1 1504 aa16.07■□□□□ 0.16
HLA-DMB-262ENST00000498020 DCAF8L2P0C7V8 631 aa15.16■□□□□ 0.02
HLA-DMB-262ENST00000498020 SHROOM4Q9ULL8 1493 aa13.86□□□□□ -0.19
HLA-DMB-262ENST00000498020 SUPT5HO00267 1087 aaKnown RBP13.69□□□□□ -0.22
HLA-DMB-262ENST00000498020 CCDC180Q9P1Z9 1646 aa13.61□□□□□ -0.23
HLA-DMB-262ENST00000498020 ZCCHC6Q5VYS8 1495 aaKnown RBP13.5□□□□□ -0.25
HLA-DMB-262ENST00000498020 ABCC9O60706 1549 aa13.42□□□□□ -0.26
HLA-DMB-262ENST00000498020 DCAF1Q9Y4B6 1507 aa13.14□□□□□ -0.31
HLA-DMB-262ENST00000498020 PABPN1Q86U42 306 aaKnown RBP eCLIP13.08□□□□□ -0.31
HLA-DMB-262ENST00000498020 EHMT2Q96KQ7 1210 aa13.08□□□□□ -0.32
HLA-DMB-262ENST00000498020 CHIC1Q5VXU3 224 aa13.01□□□□□ -0.33
HLA-DMB-262ENST00000498020 SCRIBQ14160 1630 aa12.85□□□□□ -0.35
HLA-DMB-262ENST00000498020 MYO15BQ96JP2 1530 aa12.84□□□□□ -0.35
HLA-DMB-262ENST00000498020 RB1CC1Q8TDY2 1594 aa12.83□□□□□ -0.36
HLA-DMB-262ENST00000498020 NACADO15069 1562 aa12.81□□□□□ -0.36
HLA-DMB-262ENST00000498020 FAM9AQ8IZU1 332 aaPredicted RBP12.81□□□□□ -0.36
HLA-DMB-262ENST00000498020 TRIM41Q8WV44 630 aa12.81□□□□□ -0.36
HLA-DMB-262ENST00000498020 RANGAP1P46060 587 aaPredicted RBP12.77□□□□□ -0.36
HLA-DMB-262ENST00000498020 TTBK1Q5TCY1 1321 aaPredicted RBP12.77□□□□□ -0.37
HLA-DMB-262ENST00000498020 RSF1Q96T23 1441 aaPredicted RBP12.69□□□□□ -0.38
HLA-DMB-262ENST00000498020 ATP1B4Q9UN42 357 aaPredicted RBP12.65□□□□□ -0.38
HLA-DMB-262ENST00000498020 LOC105371045A0A1W2PR82 267 aa12.62□□□□□ -0.39
HLA-DMB-262ENST00000498020 PCGF6Q9BYE7 350 aa12.61□□□□□ -0.39
HLA-DMB-262ENST00000498020 FBLN2P98095 1184 aa12.55□□□□□ -0.4
HLA-DMB-262ENST00000498020 CECR2Q9BXF3 1484 aa12.51□□□□□ -0.41
HLA-DMB-262ENST00000498020 MYT1LQ9UL68 1186 aa12.5□□□□□ -0.41
HLA-DMB-262ENST00000498020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.45□□□□□ -0.42
HLA-DMB-262ENST00000498020 HNRNPUL2Q1KMD3 747 aaKnown RBP12.45□□□□□ -0.42
HLA-DMB-262ENST00000498020 BAZ1AQ9NRL2 1556 aaPredicted RBP12.44□□□□□ -0.42
HLA-DMB-262ENST00000498020 TRIM26Q12899 539 aaPredicted RBP12.43□□□□□ -0.42
HLA-DMB-262ENST00000498020 MROH2BQ7Z745 1585 aa12.43□□□□□ -0.42
HLA-DMB-262ENST00000498020 APLP2Q06481 763 aa12.4□□□□□ -0.42
HLA-DMB-262ENST00000498020 HRCP23327 699 aa12.39□□□□□ -0.43
HLA-DMB-262ENST00000498020 UBTFP17480 764 aaKnown RBP12.33□□□□□ -0.44
HLA-DMB-262ENST00000498020 ZEB1P37275 1124 aaPredicted RBP12.3□□□□□ -0.44
HLA-DMB-262ENST00000498020 WIZO95785 1651 aa12.27□□□□□ -0.45
HLA-DMB-262ENST00000498020 TOP2AP11388 1531 aaKnown RBP12.21□□□□□ -0.45
HLA-DMB-262ENST00000498020 SMARCA4P51532 1647 aa12.2□□□□□ -0.46
HLA-DMB-262ENST00000498020 CSRNP3Q8WYN3 585 aa12.2□□□□□ -0.46
HLA-DMB-262ENST00000498020 CCDC88BA6NC98 1476 aa12.19□□□□□ -0.46
HLA-DMB-262ENST00000498020 BICRAQ9NZM4 1560 aa12.18□□□□□ -0.46
HLA-DMB-262ENST00000498020 UNC13AQ9UPW8 1703 aa12.17□□□□□ -0.46
HLA-DMB-262ENST00000498020 PPARGC1BQ86YN6 1023 aaKnown RBP12.17□□□□□ -0.46
HLA-DMB-262ENST00000498020 PLPPR3Q6T4P5 718 aa12.16□□□□□ -0.46
HLA-DMB-262ENST00000498020 BAZ1BQ9UIG0 1483 aaKnown RBP12.14□□□□□ -0.47
HLA-DMB-262ENST00000498020 EEA1Q15075 1411 aa12.13□□□□□ -0.47
HLA-DMB-262ENST00000498020 TRHP20396 242 aaPredicted RBP12.11□□□□□ -0.47
HLA-DMB-262ENST00000498020 CCER1Q8TC90 406 aaPredicted RBP12.09□□□□□ -0.47
HLA-DMB-262ENST00000498020 WRNQ14191 1432 aaPredicted RBP eCLIP12.09□□□□□ -0.47
HLA-DMB-262ENST00000498020 SMARCA2P51531 1590 aa12.08□□□□□ -0.48
HLA-DMB-262ENST00000498020 PELP1Q8IZL8 1130 aaKnown RBP12.08□□□□□ -0.48
HLA-DMB-262ENST00000498020 ATAD2BQ9ULI0 1458 aa12.05□□□□□ -0.48
HLA-DMB-262ENST00000498020 DNAJC5BQ9UF47 199 aa12.05□□□□□ -0.48
HLA-DMB-262ENST00000498020 ABCC8Q09428 1581 aa12.02□□□□□ -0.48
HLA-DMB-262ENST00000498020 EIF4G1Q04637 1599 aaKnown RBP12.02□□□□□ -0.49
HLA-DMB-262ENST00000498020 NPM1P06748 294 aaKnown RBP eCLIP12.02□□□□□ -0.49
HLA-DMB-262ENST00000498020 ARID3CA6NKF2 412 aa12.01□□□□□ -0.49
HLA-DMB-262ENST00000498020 TNIKQ9UKE5 1360 aa12□□□□□ -0.49
HLA-DMB-262ENST00000498020 SOGA1O94964 1423 aa11.98□□□□□ -0.49
HLA-DMB-262ENST00000498020 GOLGA3Q08378 1498 aa11.98□□□□□ -0.49
HLA-DMB-262ENST00000498020 CEP162Q5TB80 1403 aa11.96□□□□□ -0.49
HLA-DMB-262ENST00000498020 CC2D2AQ9P2K1 1620 aa11.93□□□□□ -0.5
HLA-DMB-262ENST00000498020 CEP164Q9UPV0 1460 aa11.92□□□□□ -0.5
HLA-DMB-262ENST00000498020 ERCC6Q03468 1493 aa11.89□□□□□ -0.51
HLA-DMB-262ENST00000498020 PEG3Q9GZU2 1588 aa11.89□□□□□ -0.51
HLA-DMB-262ENST00000498020 CLIP1P30622 1438 aa11.88□□□□□ -0.51
HLA-DMB-262ENST00000498020 NCAPD3P42695 1498 aa11.87□□□□□ -0.51
HLA-DMB-262ENST00000498020 CHMP7Q8WUX9 453 aaPredicted RBP11.86□□□□□ -0.51
HLA-DMB-262ENST00000498020 ITGAEP38570 1179 aa11.84□□□□□ -0.51
HLA-DMB-262ENST00000498020 ESF1Q9H501 851 aaKnown RBP11.84□□□□□ -0.51
HLA-DMB-262ENST00000498020 KIF27Q86VH2 1401 aa11.83□□□□□ -0.52
HLA-DMB-262ENST00000498020 RUSC2Q8N2Y8 1516 aa11.82□□□□□ -0.52
HLA-DMB-262ENST00000498020 P3H3Q8IVL6 736 aa11.81□□□□□ -0.52
HLA-DMB-262ENST00000498020 BCANQ96GW7 911 aa11.79□□□□□ -0.52
HLA-DMB-262ENST00000498020 AEBP2Q6ZN18 517 aaPredicted RBP11.79□□□□□ -0.52
HLA-DMB-262ENST00000498020 HMGXB3Q12766 1538 aa11.77□□□□□ -0.53
HLA-DMB-262ENST00000498020 CADPSQ9ULU8 1353 aa11.76□□□□□ -0.53
HLA-DMB-262ENST00000498020 SYNJ1O43426 1573 aa11.72□□□□□ -0.53
HLA-DMB-262ENST00000498020 VPS8Q8N3P4 1428 aa11.72□□□□□ -0.53
HLA-DMB-262ENST00000498020 RAPGEF2Q9Y4G8 1499 aa11.7□□□□□ -0.54
HLA-DMB-262ENST00000498020 CFTRP13569 1480 aa11.7□□□□□ -0.54
HLA-DMB-262ENST00000498020 CUX2O14529 1486 aa11.68□□□□□ -0.54
HLA-DMB-262ENST00000498020 ARID4BQ4LE39 1312 aaPredicted RBP11.66□□□□□ -0.54
HLA-DMB-262ENST00000498020 KIF21BO75037 1637 aa11.66□□□□□ -0.54
HLA-DMB-262ENST00000498020 ZNF777Q9ULD5 760 aaPredicted RBP11.66□□□□□ -0.54
HLA-DMB-262ENST00000498020 CENPBP07199 599 aaPredicted RBP11.65□□□□□ -0.54
HLA-DMB-262ENST00000498020 TOP2BQ02880 1626 aa11.65□□□□□ -0.54
HLA-DMB-262ENST00000498020 KCNH8Q96L42 1107 aa11.65□□□□□ -0.54
HLA-DMB-262ENST00000498020 CARMIL1Q5VZK9 1371 aa11.65□□□□□ -0.54
HLA-DMB-262ENST00000498020 DIEXFQ68CQ4 756 aaKnown RBP11.64□□□□□ -0.55
HLA-DMB-262ENST00000498020 PDS5BQ9NTI5 1447 aa11.63□□□□□ -0.55
HLA-DMB-262ENST00000498020 CYB5RLQ6IPT4 315 aa11.61□□□□□ -0.55
HLA-DMB-262ENST00000498020 SLC4A1APQ9BWU0 796 aaKnown RBP11.61□□□□□ -0.55
HLA-DMB-262ENST00000498020 FAM50AQ14320 339 aaKnown RBP11.6□□□□□ -0.55
HLA-DMB-262ENST00000498020 SENP3Q9H4L4 574 aaPredicted RBP11.59□□□□□ -0.55
HLA-DMB-262ENST00000498020 ZNF316A6NFI3 1004 aaPredicted RBP11.59□□□□□ -0.55
HLA-DMB-262ENST00000498020 FANCD2Q9BXW9 1451 aa11.58□□□□□ -0.55
HLA-DMB-262ENST00000498020 CUX1P39880 1505 aa11.58□□□□□ -0.56
HLA-DMB-262ENST00000498020 ERICH3Q5RHP9 1530 aa11.58□□□□□ -0.56
HLA-DMB-262ENST00000498020 PRXQ9BXM0 1461 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms