RNA–Protein interactions for RNA: ENST00000494300.1

NXF3-206, Transcript of nuclear RNA export factor 3, humanhuman

TSL 3

Gene NXF3, Length 543 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3-206ENST00000494300 AEBP2Q6ZN18 517 aaPredicted RBP18.42■□□□□ 0.54
NXF3-206ENST00000494300 CHIC1Q5VXU3 224 aa17.89■□□□□ 0.45
NXF3-206ENST00000494300 PHF23Q9BUL5 403 aaPredicted RBP15.7■□□□□ 0.1
NXF3-206ENST00000494300 SENP3Q9H4L4 574 aaPredicted RBP15.69■□□□□ 0.1
NXF3-206ENST00000494300 FOXD1Q16676 465 aa14.56□□□□□ -0.08
NXF3-206ENST00000494300 PLPPR3Q6T4P5 718 aa14.49□□□□□ -0.09
NXF3-206ENST00000494300 NISCHQ9Y2I1 1504 aa14.05□□□□□ -0.16
NXF3-206ENST00000494300 ADRA2BP18089 450 aa13.91□□□□□ -0.18
NXF3-206ENST00000494300 PPP6R1Q9UPN7 881 aa13.91□□□□□ -0.18
NXF3-206ENST00000494300 PIAS4Q8N2W9 510 aaPredicted RBP13.74□□□□□ -0.21
NXF3-206ENST00000494300 MSH5O43196 834 aa13.5□□□□□ -0.25
NXF3-206ENST00000494300 PPP4R3CPQ6ZMV5 832 aa12.75□□□□□ -0.37
NXF3-206ENST00000494300 SCAF1Q9H7N4 1312 aaKnown RBP12.75□□□□□ -0.37
NXF3-206ENST00000494300 MAPK8IP2Q13387 824 aaPredicted RBP12.65□□□□□ -0.38
NXF3-206ENST00000494300 SLC24A1O60721 1099 aa12.59□□□□□ -0.39
NXF3-206ENST00000494300 POTEDQ86YR6 584 aa12.5□□□□□ -0.41
NXF3-206ENST00000494300 DMRT2Q9Y5R5 561 aa12.48□□□□□ -0.41
NXF3-206ENST00000494300 CCDC180Q9P1Z9 1646 aa12.46□□□□□ -0.41
NXF3-206ENST00000494300 CNKSR2Q8WXI2 1034 aa12.42□□□□□ -0.42
NXF3-206ENST00000494300 NCBP3Q53F19 620 aaKnown RBP12.41□□□□□ -0.42
NXF3-206ENST00000494300 KCNA4P22459 653 aa12.31□□□□□ -0.44
NXF3-206ENST00000494300 RNF216Q9NWF9 866 aaPredicted RBP12.2□□□□□ -0.46
NXF3-206ENST00000494300 NPM3O75607 178 aaKnown RBP12.19□□□□□ -0.46
NXF3-206ENST00000494300 HOXD11P31277 338 aaPredicted RBP12.17□□□□□ -0.46
NXF3-206ENST00000494300 ABCC9O60706 1549 aa12.16□□□□□ -0.46
NXF3-206ENST00000494300 EHMT2Q96KQ7 1210 aa12.11□□□□□ -0.47
NXF3-206ENST00000494300 DCAF8L1A6NGE4 600 aa12.04□□□□□ -0.48
NXF3-206ENST00000494300 DCAF8L2P0C7V8 631 aa11.85□□□□□ -0.51
NXF3-206ENST00000494300 DNAJC5BQ9UF47 199 aa11.79□□□□□ -0.52
NXF3-206ENST00000494300 RB1CC1Q8TDY2 1594 aa11.74□□□□□ -0.53
NXF3-206ENST00000494300 NACADO15069 1562 aa11.72□□□□□ -0.53
NXF3-206ENST00000494300 SLC4A1APQ9BWU0 796 aaKnown RBP11.72□□□□□ -0.53
NXF3-206ENST00000494300 ZCCHC6Q5VYS8 1495 aaKnown RBP11.71□□□□□ -0.53
NXF3-206ENST00000494300 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.66□□□□□ -0.54
NXF3-206ENST00000494300 MYO15BQ96JP2 1530 aa11.65□□□□□ -0.55
NXF3-206ENST00000494300 DCAF1Q9Y4B6 1507 aa11.62□□□□□ -0.55
NXF3-206ENST00000494300 RTN4Q9NQC3 1192 aaKnown RBP11.58□□□□□ -0.56
NXF3-206ENST00000494300 SLC4A2P04920 1241 aa11.53□□□□□ -0.56
NXF3-206ENST00000494300 RNF39Q9H2S5 420 aa11.53□□□□□ -0.56
NXF3-206ENST00000494300 CSRNP3Q8WYN3 585 aa11.52□□□□□ -0.57
NXF3-206ENST00000494300 AMER1Q5JTC6 1135 aaPredicted RBP11.46□□□□□ -0.57
NXF3-206ENST00000494300 U3KPZ7 1027 aaPredicted RBP11.41□□□□□ -0.58
NXF3-206ENST00000494300 SCRIBQ14160 1630 aa11.4□□□□□ -0.58
NXF3-206ENST00000494300 C1QBPQ07021 282 aaKnown RBP11.4□□□□□ -0.58
NXF3-206ENST00000494300 PABPN1Q86U42 306 aaKnown RBP eCLIP11.38□□□□□ -0.59
NXF3-206ENST00000494300 CACNB1Q02641 598 aaPredicted RBP11.37□□□□□ -0.59
NXF3-206ENST00000494300 FOXD4L1Q9NU39 408 aa11.37□□□□□ -0.59
NXF3-206ENST00000494300 UNC13AQ9UPW8 1703 aa11.33□□□□□ -0.6
NXF3-206ENST00000494300 ZBTB22O15209 634 aa11.31□□□□□ -0.6
NXF3-206ENST00000494300 MYCNP04198 464 aaPredicted RBP11.29□□□□□ -0.6
NXF3-206ENST00000494300 BICRAQ9NZM4 1560 aa11.27□□□□□ -0.61
NXF3-206ENST00000494300 SHROOM4Q9ULL8 1493 aa11.26□□□□□ -0.61
NXF3-206ENST00000494300 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.26□□□□□ -0.61
NXF3-206ENST00000494300 HNRNPUL2Q1KMD3 747 aaKnown RBP11.26□□□□□ -0.61
NXF3-206ENST00000494300 SAMD1Q6SPF0 538 aaPredicted RBP11.2□□□□□ -0.62
NXF3-206ENST00000494300 APLP2Q06481 763 aa11.18□□□□□ -0.62
NXF3-206ENST00000494300 DAXXQ9UER7 740 aaPredicted RBP11.17□□□□□ -0.62
NXF3-206ENST00000494300 CAPN15O75808 1086 aa11.14□□□□□ -0.63
NXF3-206ENST00000494300 SPINK5Q9NQ38 1064 aaPredicted RBP11.14□□□□□ -0.63
NXF3-206ENST00000494300 TRHP20396 242 aaPredicted RBP11.06□□□□□ -0.64
NXF3-206ENST00000494300 EIF4G1Q04637 1599 aaKnown RBP11.03□□□□□ -0.64
NXF3-206ENST00000494300 ZNF219Q9P2Y4 722 aaPredicted RBP11.03□□□□□ -0.64
NXF3-206ENST00000494300 ATXN8OSP0DMR3 200 aa10.97□□□□□ -0.65
NXF3-206ENST00000494300 ATF5Q9Y2D1 282 aaPredicted RBP10.97□□□□□ -0.65
NXF3-206ENST00000494300 CC2D2AQ9P2K1 1620 aa10.96□□□□□ -0.65
NXF3-206ENST00000494300 DSG3P32926 999 aa10.94□□□□□ -0.66
NXF3-206ENST00000494300 CECR2Q9BXF3 1484 aa10.93□□□□□ -0.66
NXF3-206ENST00000494300 BAZ1AQ9NRL2 1556 aaPredicted RBP10.92□□□□□ -0.66
NXF3-206ENST00000494300 ABCB7O75027 752 aa10.91□□□□□ -0.66
NXF3-206ENST00000494300 SMARCA4P51532 1647 aa10.88□□□□□ -0.67
NXF3-206ENST00000494300 PRKCSHP14314 528 aaPredicted RBP10.86□□□□□ -0.67
NXF3-206ENST00000494300 SMARCA2P51531 1590 aa10.85□□□□□ -0.67
NXF3-206ENST00000494300 POLA2Q14181 598 aa10.83□□□□□ -0.68
NXF3-206ENST00000494300 MROH2BQ7Z745 1585 aa10.82□□□□□ -0.68
NXF3-206ENST00000494300 ATAD2BQ9ULI0 1458 aa10.81□□□□□ -0.68
NXF3-206ENST00000494300 NCAPD3P42695 1498 aa10.8□□□□□ -0.68
NXF3-206ENST00000494300 BAZ1BQ9UIG0 1483 aaKnown RBP10.78□□□□□ -0.68
NXF3-206ENST00000494300 HMGXB3Q12766 1538 aa10.76□□□□□ -0.69
NXF3-206ENST00000494300 PEG3Q9GZU2 1588 aa10.75□□□□□ -0.69
NXF3-206ENST00000494300 ARXQ96QS3 562 aa10.74□□□□□ -0.69
NXF3-206ENST00000494300 RSF1Q96T23 1441 aaPredicted RBP10.74□□□□□ -0.69
NXF3-206ENST00000494300 WIZO95785 1651 aa10.69□□□□□ -0.7
NXF3-206ENST00000494300 TAOK2Q9UL54 1235 aa10.68□□□□□ -0.7
NXF3-206ENST00000494300 ZBTB12Q9Y330 459 aaPredicted RBP10.64□□□□□ -0.71
NXF3-206ENST00000494300 TOP2AP11388 1531 aaKnown RBP10.63□□□□□ -0.71
NXF3-206ENST00000494300 SUPT5HO00267 1087 aaKnown RBP10.62□□□□□ -0.71
NXF3-206ENST00000494300 TIMELESSQ9UNS1 1208 aa10.61□□□□□ -0.71
NXF3-206ENST00000494300 BCANQ96GW7 911 aa10.6□□□□□ -0.71
NXF3-206ENST00000494300 FBLN2P98095 1184 aa10.56□□□□□ -0.72
NXF3-206ENST00000494300 ERCC6Q03468 1493 aa10.55□□□□□ -0.72
NXF3-206ENST00000494300 PLCB2Q00722 1185 aa10.52□□□□□ -0.73
NXF3-206ENST00000494300 LAMC3Q9Y6N6 1575 aa10.52□□□□□ -0.73
NXF3-206ENST00000494300 CADPSQ9ULU8 1353 aa10.52□□□□□ -0.73
NXF3-206ENST00000494300 NESP48681 1621 aa10.5□□□□□ -0.73
NXF3-206ENST00000494300 PDS5BQ9NTI5 1447 aa10.5□□□□□ -0.73
NXF3-206ENST00000494300 CCDC88BA6NC98 1476 aa10.49□□□□□ -0.73
NXF3-206ENST00000494300 MKRN4PQ13434 485 aaPredicted RBP10.48□□□□□ -0.73
NXF3-206ENST00000494300 OSCARQ8IYS5 282 aa10.46□□□□□ -0.73
NXF3-206ENST00000494300 RBM42Q9BTD8 480 aaKnown RBP10.45□□□□□ -0.74
NXF3-206ENST00000494300 CFTRP13569 1480 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms