RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, humanhuman

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-238ENST00000493853 AEBP2Q6ZN18 517 aaPredicted RBP25.53■■□□□ 1.68
RBM39-238ENST00000493853 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
RBM39-238ENST00000493853 SENP3Q9H4L4 574 aaPredicted RBP21.76■■□□□ 1.07
RBM39-238ENST00000493853 PHF23Q9BUL5 403 aaPredicted RBP21.61■■□□□ 1.05
RBM39-238ENST00000493853 FOXD1Q16676 465 aa20.23■□□□□ 0.83
RBM39-238ENST00000493853 PLPPR3Q6T4P5 718 aa19.88■□□□□ 0.77
RBM39-238ENST00000493853 ADRA2BP18089 450 aa19.19■□□□□ 0.66
RBM39-238ENST00000493853 PPP6R1Q9UPN7 881 aa19.19■□□□□ 0.66
RBM39-238ENST00000493853 PIAS4Q8N2W9 510 aaPredicted RBP19.03■□□□□ 0.64
RBM39-238ENST00000493853 MSH5O43196 834 aa18.81■□□□□ 0.6
RBM39-238ENST00000493853 NISCHQ9Y2I1 1504 aa18.43■□□□□ 0.54
RBM39-238ENST00000493853 POTEDQ86YR6 584 aa17.7■□□□□ 0.42
RBM39-238ENST00000493853 SCAF1Q9H7N4 1312 aaKnown RBP17.59■□□□□ 0.41
RBM39-238ENST00000493853 MAPK8IP2Q13387 824 aaPredicted RBP17.5■□□□□ 0.39
RBM39-238ENST00000493853 PPP4R3CPQ6ZMV5 832 aa17.48■□□□□ 0.39
RBM39-238ENST00000493853 DMRT2Q9Y5R5 561 aa17.3■□□□□ 0.36
RBM39-238ENST00000493853 CNKSR2Q8WXI2 1034 aa17.06■□□□□ 0.32
RBM39-238ENST00000493853 NCBP3Q53F19 620 aaKnown RBP16.95■□□□□ 0.3
RBM39-238ENST00000493853 HOXD11P31277 338 aaPredicted RBP16.8■□□□□ 0.28
RBM39-238ENST00000493853 RNF216Q9NWF9 866 aaPredicted RBP16.8■□□□□ 0.28
RBM39-238ENST00000493853 KCNA4P22459 653 aa16.68■□□□□ 0.26
RBM39-238ENST00000493853 DCAF8L1A6NGE4 600 aa16.67■□□□□ 0.26
RBM39-238ENST00000493853 NPM3O75607 178 aaKnown RBP16.66■□□□□ 0.26
RBM39-238ENST00000493853 ABCC9O60706 1549 aa16.51■□□□□ 0.23
RBM39-238ENST00000493853 CCDC180Q9P1Z9 1646 aa16.41■□□□□ 0.22
RBM39-238ENST00000493853 DNAJC5BQ9UF47 199 aa16.15■□□□□ 0.18
RBM39-238ENST00000493853 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.08■□□□□ 0.166e-47■□□□□ 10
RBM39-238ENST00000493853 RNF39Q9H2S5 420 aa16.05■□□□□ 0.16
RBM39-238ENST00000493853 CACNB1Q02641 598 aaPredicted RBP15.94■□□□□ 0.14
RBM39-238ENST00000493853 C1QBPQ07021 282 aaKnown RBP15.86■□□□□ 0.13
RBM39-238ENST00000493853 SLC4A1APQ9BWU0 796 aaKnown RBP15.85■□□□□ 0.13
RBM39-238ENST00000493853 SLC4A2P04920 1241 aa15.79■□□□□ 0.12
RBM39-238ENST00000493853 DCAF8L2P0C7V8 631 aa15.78■□□□□ 0.12
RBM39-238ENST00000493853 U3KPZ7 1027 aaPredicted RBP15.73■□□□□ 0.11
RBM39-238ENST00000493853 RB1CC1Q8TDY2 1594 aa15.69■□□□□ 0.1
RBM39-238ENST00000493853 NACADO15069 1562 aa15.59■□□□□ 0.09
RBM39-238ENST00000493853 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.46■□□□□ 0.07
RBM39-238ENST00000493853 HNRNPUL2Q1KMD3 747 aaKnown RBP15.46■□□□□ 0.07
RBM39-238ENST00000493853 PABPN1Q86U42 306 aaKnown RBP eCLIP15.46■□□□□ 0.07
RBM39-238ENST00000493853 FOXD4L1Q9NU39 408 aa15.45■□□□□ 0.06
RBM39-238ENST00000493853 MYCNP04198 464 aaPredicted RBP15.42■□□□□ 0.06
RBM39-238ENST00000493853 CAPN15O75808 1086 aa15.41■□□□□ 0.06
RBM39-238ENST00000493853 SPINK5Q9NQ38 1064 aaPredicted RBP15.4■□□□□ 0.06
RBM39-238ENST00000493853 APLP2Q06481 763 aa15.39■□□□□ 0.05
RBM39-238ENST00000493853 MYO15BQ96JP2 1530 aa15.38■□□□□ 0.05
RBM39-238ENST00000493853 SAMD1Q6SPF0 538 aaPredicted RBP15.37■□□□□ 0.05
RBM39-238ENST00000493853 ZBTB22O15209 634 aa15.3■□□□□ 0.04
RBM39-238ENST00000493853 TRHP20396 242 aaPredicted RBP15.26■□□□□ 0.03
RBM39-238ENST00000493853 ZCCHC6Q5VYS8 1495 aaKnown RBP15.26■□□□□ 0.03
RBM39-238ENST00000493853 ZNF219Q9P2Y4 722 aaPredicted RBP15.21■□□□□ 0.03
RBM39-238ENST00000493853 DCAF1Q9Y4B6 1507 aa15.19■□□□□ 0.02
RBM39-238ENST00000493853 DSG3P32926 999 aa15.17■□□□□ 0.02
RBM39-238ENST00000493853 BICRAQ9NZM4 1560 aa15.15■□□□□ 0.02
RBM39-238ENST00000493853 UNC13AQ9UPW8 1703 aa15.14■□□□□ 0.01
RBM39-238ENST00000493853 ABCB7O75027 752 aa15.08■□□□□ 0
RBM39-238ENST00000493853 SCRIBQ14160 1630 aa15.03■□□□□ -0
RBM39-238ENST00000493853 EHMT2Q96KQ7 1210 aa15.03■□□□□ -0
RBM39-238ENST00000493853 SHROOM4Q9ULL8 1493 aa15.01□□□□□ -0.01
RBM39-238ENST00000493853 ATF5Q9Y2D1 282 aaPredicted RBP15.01□□□□□ -0.01
RBM39-238ENST00000493853 CSRNP3Q8WYN3 585 aa14.97□□□□□ -0.01
RBM39-238ENST00000493853 ATXN8OSP0DMR3 200 aa14.93□□□□□ -0.02
RBM39-238ENST00000493853 POLA2Q14181 598 aa14.91□□□□□ -0.02
RBM39-238ENST00000493853 CECR2Q9BXF3 1484 aa14.87□□□□□ -0.03
RBM39-238ENST00000493853 CC2D2AQ9P2K1 1620 aa14.84□□□□□ -0.03
RBM39-238ENST00000493853 EIF4G1Q04637 1599 aaKnown RBP14.82□□□□□ -0.04
RBM39-238ENST00000493853 ZBTB12Q9Y330 459 aaPredicted RBP14.63□□□□□ -0.07
RBM39-238ENST00000493853 RBM42Q9BTD8 480 aaKnown RBP14.5□□□□□ -0.09
RBM39-238ENST00000493853 FBLN2P98095 1184 aa14.47□□□□□ -0.09
RBM39-238ENST00000493853 NCAPD3P42695 1498 aa14.43□□□□□ -0.1
RBM39-238ENST00000493853 OSCARQ8IYS5 282 aa14.4□□□□□ -0.1
RBM39-238ENST00000493853 ATAD2BQ9ULI0 1458 aa14.38□□□□□ -0.11
RBM39-238ENST00000493853 SMARCA2P51531 1590 aa14.34□□□□□ -0.11
RBM39-238ENST00000493853 MKRN4PQ13434 485 aaPredicted RBP14.33□□□□□ -0.12
RBM39-238ENST00000493853 SMARCA4P51532 1647 aa14.32□□□□□ -0.12
RBM39-238ENST00000493853 BAZ1AQ9NRL2 1556 aaPredicted RBP14.3□□□□□ -0.12
RBM39-238ENST00000493853 ERCC6Q03468 1493 aa14.3□□□□□ -0.12
RBM39-238ENST00000493853 HMGXB3Q12766 1538 aa14.27□□□□□ -0.12
RBM39-238ENST00000493853 BAZ1BQ9UIG0 1483 aaKnown RBP14.27□□□□□ -0.12
RBM39-238ENST00000493853 AKT1S1Q96B36 256 aa14.23□□□□□ -0.13
RBM39-238ENST00000493853 SPDYE2BA6NHP3 402 aa14.2□□□□□ -0.14
RBM39-238ENST00000493853 SPDYE6P0CI01 402 aa14.2□□□□□ -0.14
RBM39-238ENST00000493853 SPDYE2Q495Y8 402 aa14.2□□□□□ -0.14
RBM39-238ENST00000493853 MROH2BQ7Z745 1585 aa14.19□□□□□ -0.14
RBM39-238ENST00000493853 DNAJC5Q9H3Z4 198 aa14.19□□□□□ -0.14
RBM39-238ENST00000493853 CUX2O14529 1486 aa14.18□□□□□ -0.14
RBM39-238ENST00000493853 NESP48681 1621 aa14.16□□□□□ -0.14
RBM39-238ENST00000493853 PEG3Q9GZU2 1588 aa14.16□□□□□ -0.14
RBM39-238ENST00000493853 ZNF692Q9BU19 519 aaPredicted RBP14.12□□□□□ -0.15
RBM39-238ENST00000493853 REM2Q8IYK8 340 aaPredicted RBP14.1□□□□□ -0.15
RBM39-238ENST00000493853 PDS5BQ9NTI5 1447 aa14.07□□□□□ -0.16
RBM39-238ENST00000493853 LAMC3Q9Y6N6 1575 aa14.05□□□□□ -0.16
RBM39-238ENST00000493853 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
RBM39-238ENST00000493853 CHRDL2Q6WN34 429 aa14.02□□□□□ -0.17
RBM39-238ENST00000493853 SSUH2Q9Y2M2 353 aa14.01□□□□□ -0.17
RBM39-238ENST00000493853 WIZO95785 1651 aa13.98□□□□□ -0.17
RBM39-238ENST00000493853 RSF1Q96T23 1441 aaPredicted RBP13.97□□□□□ -0.17
RBM39-238ENST00000493853 POTEHQ6S545 545 aa13.96□□□□□ -0.17
RBM39-238ENST00000493853 PITPNM1O00562 1244 aa13.93□□□□□ -0.18
RBM39-238ENST00000493853 THOC2Q8NI27 1593 aaKnown RBP13.92□□□□□ -0.18
RBM39-238ENST00000493853 SPDYE4A6NLX3 237 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms