RNA–Protein interactions for RNA: ENST00000492934.1

SPTA1-208, Transcript of spectrin alpha, erythrocytic 1, humanhuman

TSL 2

Gene SPTA1, Length 771 nt, Biotype retained intron, Subcellular localisation Cytosol, Dendrite .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1-208ENST00000492934 AEBP2Q6ZN18 517 aaPredicted RBP25.79■■□□□ 1.72
SPTA1-208ENST00000492934 CHIC1Q5VXU3 224 aa24.15■■□□□ 1.46
SPTA1-208ENST00000492934 SENP3Q9H4L4 574 aaPredicted RBP22.13■■□□□ 1.13
SPTA1-208ENST00000492934 PHF23Q9BUL5 403 aaPredicted RBP21.76■■□□□ 1.07
SPTA1-208ENST00000492934 FOXD1Q16676 465 aa20.64■□□□□ 0.89
SPTA1-208ENST00000492934 POTEDQ86YR6 584 aa19.83■□□□□ 0.77
SPTA1-208ENST00000492934 MSH5O43196 834 aa19.55■□□□□ 0.72
SPTA1-208ENST00000492934 PIAS4Q8N2W9 510 aaPredicted RBP19.19■□□□□ 0.66
SPTA1-208ENST00000492934 PLPPR3Q6T4P5 718 aa19.04■□□□□ 0.64
SPTA1-208ENST00000492934 PPP6R1Q9UPN7 881 aa18.93■□□□□ 0.62
SPTA1-208ENST00000492934 ADRA2BP18089 450 aa18.84■□□□□ 0.61
SPTA1-208ENST00000492934 NISCHQ9Y2I1 1504 aa18.18■□□□□ 0.5
SPTA1-208ENST00000492934 DMRT2Q9Y5R5 561 aa17.46■□□□□ 0.39
SPTA1-208ENST00000492934 MAPK8IP2Q13387 824 aaPredicted RBP17.44■□□□□ 0.38
SPTA1-208ENST00000492934 SCAF1Q9H7N4 1312 aaKnown RBP17.31■□□□□ 0.36
SPTA1-208ENST00000492934 CACNB1Q02641 598 aaPredicted RBP17.04■□□□□ 0.32
SPTA1-208ENST00000492934 DCAF8L1A6NGE4 600 aa16.75■□□□□ 0.27
SPTA1-208ENST00000492934 HOXD11P31277 338 aaPredicted RBP16.64■□□□□ 0.25
SPTA1-208ENST00000492934 PPP4R3CPQ6ZMV5 832 aa16.61■□□□□ 0.25
SPTA1-208ENST00000492934 RNF39Q9H2S5 420 aa16.61■□□□□ 0.25
SPTA1-208ENST00000492934 CNKSR2Q8WXI2 1034 aa16.43■□□□□ 0.22
SPTA1-208ENST00000492934 RNF216Q9NWF9 866 aaPredicted RBP16.4■□□□□ 0.22
SPTA1-208ENST00000492934 ABCC9O60706 1549 aa16.4■□□□□ 0.22
SPTA1-208ENST00000492934 CCDC180Q9P1Z9 1646 aa16.37■□□□□ 0.21
SPTA1-208ENST00000492934 C1QBPQ07021 282 aaKnown RBP16.37■□□□□ 0.21
SPTA1-208ENST00000492934 DNAJC5BQ9UF47 199 aa16.21■□□□□ 0.19
SPTA1-208ENST00000492934 NCBP3Q53F19 620 aaKnown RBP15.87■□□□□ 0.13
SPTA1-208ENST00000492934 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.85■□□□□ 0.13
SPTA1-208ENST00000492934 NPM3O75607 178 aaKnown RBP15.6■□□□□ 0.09
SPTA1-208ENST00000492934 RB1CC1Q8TDY2 1594 aa15.59■□□□□ 0.09
SPTA1-208ENST00000492934 POTEHQ6S545 545 aa15.46■□□□□ 0.07
SPTA1-208ENST00000492934 NACADO15069 1562 aa15.45■□□□□ 0.06
SPTA1-208ENST00000492934 U3KPZ7 1027 aaPredicted RBP15.44■□□□□ 0.06
SPTA1-208ENST00000492934 DSG3P32926 999 aa15.39■□□□□ 0.05
SPTA1-208ENST00000492934 CAPN15O75808 1086 aa15.37■□□□□ 0.05
SPTA1-208ENST00000492934 SPINK5Q9NQ38 1064 aaPredicted RBP15.35■□□□□ 0.05
SPTA1-208ENST00000492934 DCAF8L2P0C7V8 631 aa15.29■□□□□ 0.04
SPTA1-208ENST00000492934 UNC13AQ9UPW8 1703 aa15.22■□□□□ 0.03
SPTA1-208ENST00000492934 MYO15BQ96JP2 1530 aa15.21■□□□□ 0.03
SPTA1-208ENST00000492934 PABPN1Q86U42 306 aaKnown RBP eCLIP15.19■□□□□ 0.02
SPTA1-208ENST00000492934 BICRAQ9NZM4 1560 aa15.12■□□□□ 0.01
SPTA1-208ENST00000492934 ZCCHC6Q5VYS8 1495 aaKnown RBP15.09■□□□□ 0.01
SPTA1-208ENST00000492934 APLP2Q06481 763 aa15.04■□□□□ -0
SPTA1-208ENST00000492934 SLC4A2P04920 1241 aa15.01□□□□□ -0.01
SPTA1-208ENST00000492934 TRHP20396 242 aaPredicted RBP15.01□□□□□ -0.01
SPTA1-208ENST00000492934 DCAF1Q9Y4B6 1507 aa15.01□□□□□ -0.01
SPTA1-208ENST00000492934 ZNF219Q9P2Y4 722 aaPredicted RBP15□□□□□ -0.01
SPTA1-208ENST00000492934 KCNA4P22459 653 aa14.98□□□□□ -0.01
SPTA1-208ENST00000492934 SHROOM4Q9ULL8 1493 aa14.95□□□□□ -0.02
SPTA1-208ENST00000492934 ABCB7O75027 752 aa14.95□□□□□ -0.02
SPTA1-208ENST00000492934 SCRIBQ14160 1630 aa14.94□□□□□ -0.02
SPTA1-208ENST00000492934 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.9□□□□□ -0.02
SPTA1-208ENST00000492934 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
SPTA1-208ENST00000492934 CC2D2AQ9P2K1 1620 aa14.81□□□□□ -0.04
SPTA1-208ENST00000492934 SAMD1Q6SPF0 538 aaPredicted RBP14.78□□□□□ -0.04
SPTA1-208ENST00000492934 EIF4G1Q04637 1599 aaKnown RBP14.77□□□□□ -0.04
SPTA1-208ENST00000492934 CECR2Q9BXF3 1484 aa14.76□□□□□ -0.05
SPTA1-208ENST00000492934 RBM42Q9BTD8 480 aaKnown RBP14.74□□□□□ -0.05
SPTA1-208ENST00000492934 CHRDL2Q6WN34 429 aa14.57□□□□□ -0.08
SPTA1-208ENST00000492934 POLA2Q14181 598 aa14.5□□□□□ -0.09
SPTA1-208ENST00000492934 MYCNP04198 464 aaPredicted RBP14.46□□□□□ -0.09
SPTA1-208ENST00000492934 AKT1S1Q96B36 256 aa14.29□□□□□ -0.12
SPTA1-208ENST00000492934 SP7Q8TDD2 431 aaPredicted RBP14.28□□□□□ -0.12
SPTA1-208ENST00000492934 SLC4A1APQ9BWU0 796 aaKnown RBP14.27□□□□□ -0.13
SPTA1-208ENST00000492934 NCAPD3P42695 1498 aa14.24□□□□□ -0.13
SPTA1-208ENST00000492934 SMARCA4P51532 1647 aa14.22□□□□□ -0.13
SPTA1-208ENST00000492934 ATAD2BQ9ULI0 1458 aa14.21□□□□□ -0.13
SPTA1-208ENST00000492934 ZBTB12Q9Y330 459 aaPredicted RBP14.21□□□□□ -0.13
SPTA1-208ENST00000492934 SMARCA2P51531 1590 aa14.2□□□□□ -0.14
SPTA1-208ENST00000492934 HMGXB3Q12766 1538 aa14.2□□□□□ -0.14
SPTA1-208ENST00000492934 ERCC6Q03468 1493 aa14.18□□□□□ -0.14
SPTA1-208ENST00000492934 CUX2O14529 1486 aa14.15□□□□□ -0.14
SPTA1-208ENST00000492934 BAZ1AQ9NRL2 1556 aaPredicted RBP14.13□□□□□ -0.15
SPTA1-208ENST00000492934 REM2Q8IYK8 340 aaPredicted RBP14.13□□□□□ -0.15
SPTA1-208ENST00000492934 ATF5Q9Y2D1 282 aaPredicted RBP14.12□□□□□ -0.15
SPTA1-208ENST00000492934 PIP4P2Q8N4L2 257 aa14.11□□□□□ -0.15
SPTA1-208ENST00000492934 BAZ1BQ9UIG0 1483 aaKnown RBP14.11□□□□□ -0.15
SPTA1-208ENST00000492934 DNAJC5Q9H3Z4 198 aa14.1□□□□□ -0.15
SPTA1-208ENST00000492934 PEG3Q9GZU2 1588 aa14.06□□□□□ -0.16
SPTA1-208ENST00000492934 NESP48681 1621 aa14.06□□□□□ -0.16
SPTA1-208ENST00000492934 FOXD4L1Q9NU39 408 aa14.05□□□□□ -0.16
SPTA1-208ENST00000492934 OSCARQ8IYS5 282 aa14.04□□□□□ -0.16
SPTA1-208ENST00000492934 MROH2BQ7Z745 1585 aa14□□□□□ -0.17
SPTA1-208ENST00000492934 HAX1O00165 279 aa13.99□□□□□ -0.17
SPTA1-208ENST00000492934 THOC2Q8NI27 1593 aaKnown RBP13.97□□□□□ -0.17
SPTA1-208ENST00000492934 LAMC3Q9Y6N6 1575 aa13.97□□□□□ -0.17
SPTA1-208ENST00000492934 PITPNM1O00562 1244 aa13.97□□□□□ -0.17
SPTA1-208ENST00000492934 FXR2P51116 673 aaKnown RBP eCLIP13.97□□□□□ -0.17
SPTA1-208ENST00000492934 KIF21AQ7Z4S6 1674 aa13.91□□□□□ -0.18
SPTA1-208ENST00000492934 PDS5BQ9NTI5 1447 aa13.86□□□□□ -0.19
SPTA1-208ENST00000492934 WIZO95785 1651 aa13.85□□□□□ -0.19
SPTA1-208ENST00000492934 CADPSQ9ULU8 1353 aa13.8□□□□□ -0.2
SPTA1-208ENST00000492934 MRC2Q9UBG0 1479 aa13.79□□□□□ -0.2
SPTA1-208ENST00000492934 WDR62O43379 1518 aa13.76□□□□□ -0.21
SPTA1-208ENST00000492934 EVX2Q03828 476 aa13.75□□□□□ -0.21
SPTA1-208ENST00000492934 ZBTB22O15209 634 aa13.74□□□□□ -0.21
SPTA1-208ENST00000492934 CEP164Q9UPV0 1460 aa13.74□□□□□ -0.21
SPTA1-208ENST00000492934 SPDYE2BA6NHP3 402 aa13.72□□□□□ -0.21
SPTA1-208ENST00000492934 SPDYE6P0CI01 402 aa13.72□□□□□ -0.21
SPTA1-208ENST00000492934 SPDYE2Q495Y8 402 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms