RNA–Protein interactions for RNA: ENST00000492361.1

TNFRSF1B-203, Transcript of TNF receptor superfamily member 1B, humanhuman

TSL 1 (best)

Gene TNFRSF1B, Length 3,583 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-203ENST00000492361 NISCHQ9Y2I1 1504 aa29.49■■■□□ 2.31
TNFRSF1B-203ENST00000492361 SHROOM4Q9ULL8 1493 aa27■■□□□ 1.91
TNFRSF1B-203ENST00000492361 DCAF8L2P0C7V8 631 aa26.78■■□□□ 1.88
TNFRSF1B-203ENST00000492361 SUPT5HO00267 1087 aaKnown RBP26.7■■□□□ 1.87
TNFRSF1B-203ENST00000492361 EHMT2Q96KQ7 1210 aa25.33■■□□□ 1.65
TNFRSF1B-203ENST00000492361 PCGF6Q9BYE7 350 aa25.26■■□□□ 1.63
TNFRSF1B-203ENST00000492361 CHIC1Q5VXU3 224 aa25.16■■□□□ 1.62
TNFRSF1B-203ENST00000492361 LOC105371045A0A1W2PR82 267 aa25.04■■□□□ 1.6
TNFRSF1B-203ENST00000492361 FAM9AQ8IZU1 332 aaPredicted RBP24.95■■□□□ 1.59
TNFRSF1B-203ENST00000492361 PPARGC1BQ86YN6 1023 aaKnown RBP24.82■■□□□ 1.56
TNFRSF1B-203ENST00000492361 ZCCHC6Q5VYS8 1495 aaKnown RBP24.77■■□□□ 1.56
TNFRSF1B-203ENST00000492361 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
TNFRSF1B-203ENST00000492361 HRCP23327 699 aa24.64■■□□□ 1.54
TNFRSF1B-203ENST00000492361 TRIM41Q8WV44 630 aa24.44■■□□□ 1.5
TNFRSF1B-203ENST00000492361 TTBK1Q5TCY1 1321 aaPredicted RBP24.42■■□□□ 1.5
TNFRSF1B-203ENST00000492361 CCDC180Q9P1Z9 1646 aa24.22■■□□□ 1.47
TNFRSF1B-203ENST00000492361 TRIM26Q12899 539 aaPredicted RBP24.09■■□□□ 1.45
TNFRSF1B-203ENST00000492361 ABCC9O60706 1549 aa24.03■■□□□ 1.44
TNFRSF1B-203ENST00000492361 SCRIBQ14160 1630 aa23.94■■□□□ 1.42
TNFRSF1B-203ENST00000492361 RANGAP1P46060 587 aaPredicted RBP23.82■■□□□ 1.4
TNFRSF1B-203ENST00000492361 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.71■■□□□ 1.39
TNFRSF1B-203ENST00000492361 RSF1Q96T23 1441 aaPredicted RBP23.71■■□□□ 1.39
TNFRSF1B-203ENST00000492361 CCER1Q8TC90 406 aaPredicted RBP23.68■■□□□ 1.38
TNFRSF1B-203ENST00000492361 DCAF1Q9Y4B6 1507 aa23.62■■□□□ 1.37
TNFRSF1B-203ENST00000492361 PABPN1Q86U42 306 aaKnown RBP eCLIP23.58■■□□□ 1.37
TNFRSF1B-203ENST00000492361 UBTFP17480 764 aaKnown RBP23.57■■□□□ 1.36
TNFRSF1B-203ENST00000492361 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
TNFRSF1B-203ENST00000492361 ZEB1P37275 1124 aaPredicted RBP23.47■■□□□ 1.35
TNFRSF1B-203ENST00000492361 RB1CC1Q8TDY2 1594 aa23.42■■□□□ 1.34
TNFRSF1B-203ENST00000492361 HNRNPUL2Q1KMD3 747 aaKnown RBP23.25■■□□□ 1.31
TNFRSF1B-203ENST00000492361 YTHDC1Q96MU7 727 aaKnown RBP23.22■■□□□ 1.31
TNFRSF1B-203ENST00000492361 MROH2BQ7Z745 1585 aa23.21■■□□□ 1.31
TNFRSF1B-203ENST00000492361 APLP2Q06481 763 aa23.09■■□□□ 1.29
TNFRSF1B-203ENST00000492361 WIZO95785 1651 aa23.02■■□□□ 1.28
TNFRSF1B-203ENST00000492361 DIEXFQ68CQ4 756 aaKnown RBP23.01■■□□□ 1.27
TNFRSF1B-203ENST00000492361 SCAF1Q9H7N4 1312 aaKnown RBP23■■□□□ 1.27
TNFRSF1B-203ENST00000492361 CSRNP3Q8WYN3 585 aa22.98■■□□□ 1.27
TNFRSF1B-203ENST00000492361 ABCC8Q09428 1581 aa22.93■■□□□ 1.26
TNFRSF1B-203ENST00000492361 ITGAEP38570 1179 aa22.9■■□□□ 1.26
TNFRSF1B-203ENST00000492361 SOGA1O94964 1423 aa22.89■■□□□ 1.25
TNFRSF1B-203ENST00000492361 CCDC88BA6NC98 1476 aa22.85■■□□□ 1.25
TNFRSF1B-203ENST00000492361 NEUROD1Q13562 356 aa22.83■■□□□ 1.25
TNFRSF1B-203ENST00000492361 NACADO15069 1562 aa22.82■■□□□ 1.24
TNFRSF1B-203ENST00000492361 GTF3C3Q9Y5Q9 886 aa22.79■■□□□ 1.24
TNFRSF1B-203ENST00000492361 ATP1B4Q9UN42 357 aaPredicted RBP22.78■■□□□ 1.24
TNFRSF1B-203ENST00000492361 CENPBP07199 599 aaPredicted RBP22.78■■□□□ 1.24
TNFRSF1B-203ENST00000492361 CEP162Q5TB80 1403 aa22.74■■□□□ 1.23
TNFRSF1B-203ENST00000492361 RUSC2Q8N2Y8 1516 aa22.73■■□□□ 1.23
TNFRSF1B-203ENST00000492361 ACIN1Q9UKV3 1341 aaKnown RBP22.67■■□□□ 1.22
TNFRSF1B-203ENST00000492361 BAZ1AQ9NRL2 1556 aaPredicted RBP22.61■■□□□ 1.21
TNFRSF1B-203ENST00000492361 ZNF316A6NFI3 1004 aaPredicted RBP22.58■■□□□ 1.21
TNFRSF1B-203ENST00000492361 MIER1Q8N108 512 aa22.49■■□□□ 1.19
TNFRSF1B-203ENST00000492361 WRNQ14191 1432 aaPredicted RBP eCLIP22.46■■□□□ 1.19
TNFRSF1B-203ENST00000492361 TNIKQ9UKE5 1360 aa22.45■■□□□ 1.18
TNFRSF1B-203ENST00000492361 P3H3Q8IVL6 736 aa22.44■■□□□ 1.18
TNFRSF1B-203ENST00000492361 CLIP1P30622 1438 aa22.4■■□□□ 1.18
TNFRSF1B-203ENST00000492361 TOP2AP11388 1531 aaKnown RBP22.35■■□□□ 1.17
TNFRSF1B-203ENST00000492361 GOLGA3Q08378 1498 aa22.33■■□□□ 1.16
TNFRSF1B-203ENST00000492361 SMARCA4P51532 1647 aa22.32■■□□□ 1.16
TNFRSF1B-203ENST00000492361 PELP1Q8IZL8 1130 aaKnown RBP22.3■■□□□ 1.16
TNFRSF1B-203ENST00000492361 SMARCA2P51531 1590 aa22.3■■□□□ 1.16
TNFRSF1B-203ENST00000492361 FAM50AQ14320 339 aaKnown RBP22.27■■□□□ 1.15
TNFRSF1B-203ENST00000492361 KANK4Q5T7N3 995 aaPredicted RBP22.25■■□□□ 1.15
TNFRSF1B-203ENST00000492361 BAZ1BQ9UIG0 1483 aaKnown RBP22.19■■□□□ 1.14
TNFRSF1B-203ENST00000492361 HIRIP3Q9BW71 556 aaPredicted RBP22.18■■□□□ 1.14
TNFRSF1B-203ENST00000492361 RAPGEF2Q9Y4G8 1499 aa22.17■■□□□ 1.14
TNFRSF1B-203ENST00000492361 EEA1Q15075 1411 aa22.14■■□□□ 1.13
TNFRSF1B-203ENST00000492361 CEP164Q9UPV0 1460 aa22.12■■□□□ 1.13
TNFRSF1B-203ENST00000492361 BCANQ96GW7 911 aa22.09■■□□□ 1.13
TNFRSF1B-203ENST00000492361 ARID3CA6NKF2 412 aa22.07■■□□□ 1.12
TNFRSF1B-203ENST00000492361 CNGB1Q14028 1251 aaPredicted RBP22.02■■□□□ 1.11
TNFRSF1B-203ENST00000492361 ATAD2BQ9ULI0 1458 aa22.01■■□□□ 1.11
TNFRSF1B-203ENST00000492361 VPS8Q8N3P4 1428 aa22.01■■□□□ 1.11
TNFRSF1B-203ENST00000492361 SYNJ1O43426 1573 aa21.99■■□□□ 1.11
TNFRSF1B-203ENST00000492361 DDX10Q13206 875 aaKnown RBP21.94■■□□□ 1.1
TNFRSF1B-203ENST00000492361 SIN3AQ96ST3 1273 aa21.94■■□□□ 1.1
TNFRSF1B-203ENST00000492361 EIF4G1Q04637 1599 aaKnown RBP21.93■■□□□ 1.1
TNFRSF1B-203ENST00000492361 KCNH8Q96L42 1107 aa21.89■■□□□ 1.1
TNFRSF1B-203ENST00000492361 UNC13AQ9UPW8 1703 aa21.85■■□□□ 1.09
TNFRSF1B-203ENST00000492361 BICRAQ9NZM4 1560 aa21.83■■□□□ 1.09
TNFRSF1B-203ENST00000492361 KIF27Q86VH2 1401 aa21.78■■□□□ 1.08
TNFRSF1B-203ENST00000492361 TRIM52Q96A61 297 aa21.77■■□□□ 1.07
TNFRSF1B-203ENST00000492361 KIF21BO75037 1637 aa21.75■■□□□ 1.07
TNFRSF1B-203ENST00000492361 DHX57Q6P158 1386 aaKnown RBP21.75■■□□□ 1.07
TNFRSF1B-203ENST00000492361 CHIC2Q9UKJ5 165 aa21.74■■□□□ 1.07
TNFRSF1B-203ENST00000492361 CUX2O14529 1486 aa21.72■■□□□ 1.07
TNFRSF1B-203ENST00000492361 CCNB3Q8WWL7 1395 aa21.71■■□□□ 1.07
TNFRSF1B-203ENST00000492361 POLR3GLQ9BT43 218 aa21.7■■□□□ 1.06
TNFRSF1B-203ENST00000492361 ARAP1Q96P48 1450 aa21.66■■□□□ 1.06
TNFRSF1B-203ENST00000492361 FKBP8Q14318 412 aa21.63■■□□□ 1.05
TNFRSF1B-203ENST00000492361 RAB3GAP2Q9H2M9 1393 aa21.62■■□□□ 1.05
TNFRSF1B-203ENST00000492361 CARMIL1Q5VZK9 1371 aa21.62■■□□□ 1.05
TNFRSF1B-203ENST00000492361 NEFLP07196 543 aa21.6■■□□□ 1.05
TNFRSF1B-203ENST00000492361 SENP3-EIF4A1A0A087X0R7 540 aa21.59■■□□□ 1.05
TNFRSF1B-203ENST00000492361 SUPT16HQ9Y5B9 1047 aaKnown RBP21.59■■□□□ 1.05
TNFRSF1B-203ENST00000492361 RRP7BPQ9NSQ0 103 aa21.58■■□□□ 1.05
TNFRSF1B-203ENST00000492361 IRX6P78412 446 aaPredicted RBP21.55■■□□□ 1.04
TNFRSF1B-203ENST00000492361 ANP32CO43423 234 aa21.53■■□□□ 1.04
TNFRSF1B-203ENST00000492361 IGF1RP08069 1367 aa21.5■■□□□ 1.03
TNFRSF1B-203ENST00000492361 CUX1P39880 1505 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms