RNA–Protein interactions for RNA: ENST00000491761.1

SNED1-211, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

TSL 1 (best)

Gene SNED1, Length 4,125 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-211ENST00000491761 NISCHQ9Y2I1 1504 aa21.53■■□□□ 1.04
SNED1-211ENST00000491761 DCAF8L2P0C7V8 631 aa18.99■□□□□ 0.63
SNED1-211ENST00000491761 SHROOM4Q9ULL8 1493 aa18.63■□□□□ 0.57
SNED1-211ENST00000491761 SUPT5HO00267 1087 aaKnown RBP18.4■□□□□ 0.54
SNED1-211ENST00000491761 CCDC180Q9P1Z9 1646 aa18.2■□□□□ 0.5
SNED1-211ENST00000491761 ZCCHC6Q5VYS8 1495 aaKnown RBP18.15■□□□□ 0.5
SNED1-211ENST00000491761 CHIC1Q5VXU3 224 aa17.68■□□□□ 0.42
SNED1-211ENST00000491761 DCAF1Q9Y4B6 1507 aa17.59■□□□□ 0.41
SNED1-211ENST00000491761 EHMT2Q96KQ7 1210 aa17.36■□□□□ 0.37
SNED1-211ENST00000491761 MYO15BQ96JP2 1530 aa17.33■□□□□ 0.37
SNED1-211ENST00000491761 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
SNED1-211ENST00000491761 SCRIBQ14160 1630 aa17.2■□□□□ 0.34
SNED1-211ENST00000491761 LOC105371045A0A1W2PR82 267 aa17.19■□□□□ 0.34
SNED1-211ENST00000491761 HRCP23327 699 aa17.18■□□□□ 0.34
SNED1-211ENST00000491761 TRIM41Q8WV44 630 aa17.16■□□□□ 0.34
SNED1-211ENST00000491761 ABCC9O60706 1549 aa17.14■□□□□ 0.33
SNED1-211ENST00000491761 RSF1Q96T23 1441 aaPredicted RBP17.07■□□□□ 0.32
SNED1-211ENST00000491761 FAM9AQ8IZU1 332 aaPredicted RBP17.04■□□□□ 0.32
SNED1-211ENST00000491761 NACADO15069 1562 aa16.97■□□□□ 0.31
SNED1-211ENST00000491761 TRIM26Q12899 539 aaPredicted RBP16.95■□□□□ 0.3
SNED1-211ENST00000491761 RB1CC1Q8TDY2 1594 aa16.86■□□□□ 0.29
SNED1-211ENST00000491761 CECR2Q9BXF3 1484 aa16.79■□□□□ 0.28
SNED1-211ENST00000491761 TTBK1Q5TCY1 1321 aaPredicted RBP16.78■□□□□ 0.28
SNED1-211ENST00000491761 PPARGC1BQ86YN6 1023 aaKnown RBP16.77■□□□□ 0.27
SNED1-211ENST00000491761 ZEB1P37275 1124 aaPredicted RBP16.73■□□□□ 0.27
SNED1-211ENST00000491761 MROH2BQ7Z745 1585 aa16.71■□□□□ 0.27
SNED1-211ENST00000491761 BAZ1AQ9NRL2 1556 aaPredicted RBP16.6■□□□□ 0.25
SNED1-211ENST00000491761 WIZO95785 1651 aa16.57■□□□□ 0.24
SNED1-211ENST00000491761 PABPN1Q86U42 306 aaKnown RBP eCLIP16.5■□□□□ 0.23
SNED1-211ENST00000491761 PELP1Q8IZL8 1130 aaKnown RBP16.47■□□□□ 0.23
SNED1-211ENST00000491761 UBTFP17480 764 aaKnown RBP16.43■□□□□ 0.22
SNED1-211ENST00000491761 TOP2AP11388 1531 aaKnown RBP16.39■□□□□ 0.21
SNED1-211ENST00000491761 CCER1Q8TC90 406 aaPredicted RBP16.39■□□□□ 0.21
SNED1-211ENST00000491761 CCDC88BA6NC98 1476 aa16.36■□□□□ 0.21
SNED1-211ENST00000491761 SMARCA4P51532 1647 aa16.35■□□□□ 0.21
SNED1-211ENST00000491761 YTHDC1Q96MU7 727 aaKnown RBP16.33■□□□□ 0.2
SNED1-211ENST00000491761 CSRNP3Q8WYN3 585 aa16.32■□□□□ 0.2
SNED1-211ENST00000491761 APLP2Q06481 763 aa16.29■□□□□ 0.2
SNED1-211ENST00000491761 RANGAP1P46060 587 aaPredicted RBP16.27■□□□□ 0.2
SNED1-211ENST00000491761 ABCC8Q09428 1581 aa16.27■□□□□ 0.2
SNED1-211ENST00000491761 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.26■□□□□ 0.19
SNED1-211ENST00000491761 EEA1Q15075 1411 aa16.25■□□□□ 0.19
SNED1-211ENST00000491761 SMARCA2P51531 1590 aa16.24■□□□□ 0.19
SNED1-211ENST00000491761 CENPBP07199 599 aaPredicted RBP16.23■□□□□ 0.19
SNED1-211ENST00000491761 SOGA1O94964 1423 aa16.19■□□□□ 0.18
SNED1-211ENST00000491761 CEP162Q5TB80 1403 aa16.19■□□□□ 0.18
SNED1-211ENST00000491761 TNIKQ9UKE5 1360 aa16.19■□□□□ 0.18
SNED1-211ENST00000491761 WRNQ14191 1432 aaPredicted RBP eCLIP16.17■□□□□ 0.18
SNED1-211ENST00000491761 EIF4G1Q04637 1599 aaKnown RBP16.14■□□□□ 0.17
SNED1-211ENST00000491761 GOLGA3Q08378 1498 aa16.11■□□□□ 0.17
SNED1-211ENST00000491761 UNC13AQ9UPW8 1703 aa16.1■□□□□ 0.17
SNED1-211ENST00000491761 BAZ1BQ9UIG0 1483 aaKnown RBP16.09■□□□□ 0.17
SNED1-211ENST00000491761 MYT1Q01538 1121 aa16.08■□□□□ 0.16
SNED1-211ENST00000491761 BICRAQ9NZM4 1560 aa16.03■□□□□ 0.16
SNED1-211ENST00000491761 RUSC2Q8N2Y8 1516 aa16.02■□□□□ 0.16
SNED1-211ENST00000491761 ATP1B4Q9UN42 357 aaPredicted RBP16.02■□□□□ 0.16
SNED1-211ENST00000491761 ATAD2BQ9ULI0 1458 aa16.02■□□□□ 0.16
SNED1-211ENST00000491761 CEP164Q9UPV0 1460 aa16.02■□□□□ 0.15
SNED1-211ENST00000491761 HNRNPUL2Q1KMD3 747 aaKnown RBP16■□□□□ 0.15
SNED1-211ENST00000491761 CLIP1P30622 1438 aa15.97■□□□□ 0.15
SNED1-211ENST00000491761 DIEXFQ68CQ4 756 aaKnown RBP15.95■□□□□ 0.14
SNED1-211ENST00000491761 PEG3Q9GZU2 1588 aa15.94■□□□□ 0.14
SNED1-211ENST00000491761 ERICH6Q7L0X2 663 aa15.89■□□□□ 0.13
SNED1-211ENST00000491761 SYNJ1O43426 1573 aa15.85■□□□□ 0.13
SNED1-211ENST00000491761 ZNF316A6NFI3 1004 aaPredicted RBP15.83■□□□□ 0.12
SNED1-211ENST00000491761 VPS8Q8N3P4 1428 aa15.82■□□□□ 0.12
SNED1-211ENST00000491761 KIF21BO75037 1637 aa15.8■□□□□ 0.12
SNED1-211ENST00000491761 RAPGEF2Q9Y4G8 1499 aa15.79■□□□□ 0.12
SNED1-211ENST00000491761 ACIN1Q9UKV3 1341 aaKnown RBP15.75■□□□□ 0.11
SNED1-211ENST00000491761 KIF27Q86VH2 1401 aa15.74■□□□□ 0.11
SNED1-211ENST00000491761 SCAF1Q9H7N4 1312 aaKnown RBP15.74■□□□□ 0.11
SNED1-211ENST00000491761 NCAPD3P42695 1498 aa15.72■□□□□ 0.11
SNED1-211ENST00000491761 TOP2BQ02880 1626 aa15.69■□□□□ 0.1
SNED1-211ENST00000491761 NEFLP07196 543 aa15.66■□□□□ 0.1
SNED1-211ENST00000491761 ITGAEP38570 1179 aa15.65■□□□□ 0.1
SNED1-211ENST00000491761 NEUROD1Q13562 356 aa15.65■□□□□ 0.1
SNED1-211ENST00000491761 HMGXB3Q12766 1538 aa15.65■□□□□ 0.1
SNED1-211ENST00000491761 GTF3C3Q9Y5Q9 886 aa15.63■□□□□ 0.09
SNED1-211ENST00000491761 ERICH3Q5RHP9 1530 aa15.6■□□□□ 0.09
SNED1-211ENST00000491761 PRXQ9BXM0 1461 aa15.59■□□□□ 0.09
SNED1-211ENST00000491761 MYT1LQ9UL68 1186 aa15.58■□□□□ 0.09
SNED1-211ENST00000491761 CNGB1Q14028 1251 aaPredicted RBP15.57■□□□□ 0.08
SNED1-211ENST00000491761 CFTRP13569 1480 aa15.57■□□□□ 0.08
SNED1-211ENST00000491761 KANK4Q5T7N3 995 aaPredicted RBP15.56■□□□□ 0.08
SNED1-211ENST00000491761 BIVM-ERCC5R4GMW8 1640 aa15.56■□□□□ 0.08
SNED1-211ENST00000491761 CUX1P39880 1505 aa15.55■□□□□ 0.08
SNED1-211ENST00000491761 CUX2O14529 1486 aa15.55■□□□□ 0.08
SNED1-211ENST00000491761 FBLN2P98095 1184 aa15.55■□□□□ 0.08
SNED1-211ENST00000491761 CLSPNQ9HAW4 1339 aa15.55■□□□□ 0.08
SNED1-211ENST00000491761 CADPSQ9ULU8 1353 aa15.53■□□□□ 0.08
SNED1-211ENST00000491761 MIER1Q8N108 512 aa15.5■□□□□ 0.07
SNED1-211ENST00000491761 CARMIL1Q5VZK9 1371 aa15.5■□□□□ 0.07
SNED1-211ENST00000491761 ARAP1Q96P48 1450 aa15.5■□□□□ 0.07
SNED1-211ENST00000491761 FAM50AQ14320 339 aaKnown RBP15.49■□□□□ 0.07
SNED1-211ENST00000491761 P3H3Q8IVL6 736 aa15.49■□□□□ 0.07
SNED1-211ENST00000491761 CCNB3Q8WWL7 1395 aa15.47■□□□□ 0.07
SNED1-211ENST00000491761 BCANQ96GW7 911 aa15.46■□□□□ 0.07
SNED1-211ENST00000491761 IGF1RP08069 1367 aa15.45■□□□□ 0.06
SNED1-211ENST00000491761 DHX57Q6P158 1386 aaKnown RBP15.42■□□□□ 0.06
SNED1-211ENST00000491761 ARHGAP35Q9NRY4 1499 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms