RNA–Protein interactions for RNA: ENST00000491094.6

VPS72-205, Transcript of vacuolar protein sorting 72 homolog, humanhuman

TSL 5

Gene VPS72, Length 4,267 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS72-205ENST00000491094 NISCHQ9Y2I1 1504 aa21.68■■□□□ 1.06
VPS72-205ENST00000491094 SHROOM4Q9ULL8 1493 aa19.56■□□□□ 0.72
VPS72-205ENST00000491094 SUPT5HO00267 1087 aaKnown RBP19.39■□□□□ 0.69
VPS72-205ENST00000491094 DCAF8L2P0C7V8 631 aa19.11■□□□□ 0.65
VPS72-205ENST00000491094 PCGF6Q9BYE7 350 aa18.58■□□□□ 0.56
VPS72-205ENST00000491094 CHIC1Q5VXU3 224 aa18.55■□□□□ 0.56
VPS72-205ENST00000491094 HRCP23327 699 aa18.39■□□□□ 0.53
VPS72-205ENST00000491094 MYO15BQ96JP2 1530 aa18.37■□□□□ 0.53
VPS72-205ENST00000491094 PPARGC1BQ86YN6 1023 aaKnown RBP18.35■□□□□ 0.53
VPS72-205ENST00000491094 LOC105371045A0A1W2PR82 267 aa18.34■□□□□ 0.53
VPS72-205ENST00000491094 ZCCHC6Q5VYS8 1495 aaKnown RBP18.28■□□□□ 0.52
VPS72-205ENST00000491094 EHMT2Q96KQ7 1210 aa18.19■□□□□ 0.5
VPS72-205ENST00000491094 FAM9AQ8IZU1 332 aaPredicted RBP18.05■□□□□ 0.48
VPS72-205ENST00000491094 CCDC180Q9P1Z9 1646 aa17.86■□□□□ 0.45
VPS72-205ENST00000491094 TRIM26Q12899 539 aaPredicted RBP17.83■□□□□ 0.44
VPS72-205ENST00000491094 TRIM41Q8WV44 630 aa17.81■□□□□ 0.44
VPS72-205ENST00000491094 DCAF1Q9Y4B6 1507 aa17.65■□□□□ 0.42
VPS72-205ENST00000491094 TTBK1Q5TCY1 1321 aaPredicted RBP17.59■□□□□ 0.41
VPS72-205ENST00000491094 ZEB1P37275 1124 aaPredicted RBP17.44■□□□□ 0.38
VPS72-205ENST00000491094 RSF1Q96T23 1441 aaPredicted RBP17.44■□□□□ 0.38
VPS72-205ENST00000491094 SCRIBQ14160 1630 aa17.43■□□□□ 0.38
VPS72-205ENST00000491094 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.39■□□□□ 0.37
VPS72-205ENST00000491094 CCER1Q8TC90 406 aaPredicted RBP17.33■□□□□ 0.37
VPS72-205ENST00000491094 ABCC9O60706 1549 aa17.26■□□□□ 0.35
VPS72-205ENST00000491094 RB1CC1Q8TDY2 1594 aa17.23■□□□□ 0.35
VPS72-205ENST00000491094 SCAF1Q9H7N4 1312 aaKnown RBP17.22■□□□□ 0.35
VPS72-205ENST00000491094 CECR2Q9BXF3 1484 aa17.19■□□□□ 0.34
VPS72-205ENST00000491094 UBTFP17480 764 aaKnown RBP17.08■□□□□ 0.32
VPS72-205ENST00000491094 RANGAP1P46060 587 aaPredicted RBP17.06■□□□□ 0.32
VPS72-205ENST00000491094 MROH2BQ7Z745 1585 aa17.02■□□□□ 0.32
VPS72-205ENST00000491094 DIEXFQ68CQ4 756 aaKnown RBP17.01■□□□□ 0.31
VPS72-205ENST00000491094 NEUROD1Q13562 356 aa16.99■□□□□ 0.31
VPS72-205ENST00000491094 YTHDC1Q96MU7 727 aaKnown RBP16.99■□□□□ 0.31
VPS72-205ENST00000491094 HNRNPUL2Q1KMD3 747 aaKnown RBP16.92■□□□□ 0.3
VPS72-205ENST00000491094 GTF3C3Q9Y5Q9 886 aa16.92■□□□□ 0.3
VPS72-205ENST00000491094 ACIN1Q9UKV3 1341 aaKnown RBP16.92■□□□□ 0.3
VPS72-205ENST00000491094 PELP1Q8IZL8 1130 aaKnown RBP16.9■□□□□ 0.3
VPS72-205ENST00000491094 WIZO95785 1651 aa16.9■□□□□ 0.3
VPS72-205ENST00000491094 PABPN1Q86U42 306 aaKnown RBP eCLIP16.88■□□□□ 0.29
VPS72-205ENST00000491094 CENPBP07199 599 aaPredicted RBP16.86■□□□□ 0.29
VPS72-205ENST00000491094 CSRNP3Q8WYN3 585 aa16.81■□□□□ 0.28
VPS72-205ENST00000491094 ABCC8Q09428 1581 aa16.79■□□□□ 0.28
VPS72-205ENST00000491094 SOGA1O94964 1423 aa16.78■□□□□ 0.28
VPS72-205ENST00000491094 CCDC88BA6NC98 1476 aa16.78■□□□□ 0.28
VPS72-205ENST00000491094 CEP162Q5TB80 1403 aa16.74■□□□□ 0.27
VPS72-205ENST00000491094 APLP2Q06481 763 aa16.73■□□□□ 0.27
VPS72-205ENST00000491094 NACADO15069 1562 aa16.71■□□□□ 0.27
VPS72-205ENST00000491094 ZNF316A6NFI3 1004 aaPredicted RBP16.71■□□□□ 0.27
VPS72-205ENST00000491094 RUSC2Q8N2Y8 1516 aa16.68■□□□□ 0.26
VPS72-205ENST00000491094 MIER1Q8N108 512 aa16.63■□□□□ 0.25
VPS72-205ENST00000491094 BAZ1AQ9NRL2 1556 aaPredicted RBP16.59■□□□□ 0.25
VPS72-205ENST00000491094 TNIKQ9UKE5 1360 aa16.58■□□□□ 0.25
VPS72-205ENST00000491094 ITGAEP38570 1179 aa16.53■□□□□ 0.24
VPS72-205ENST00000491094 WRNQ14191 1432 aaPredicted RBP eCLIP16.47■□□□□ 0.23
VPS72-205ENST00000491094 TOP2AP11388 1531 aaKnown RBP16.45■□□□□ 0.22
VPS72-205ENST00000491094 CLIP1P30622 1438 aa16.43■□□□□ 0.22
VPS72-205ENST00000491094 GOLGA3Q08378 1498 aa16.43■□□□□ 0.22
VPS72-205ENST00000491094 SMARCA2P51531 1590 aa16.42■□□□□ 0.22
VPS72-205ENST00000491094 SMARCA4P51532 1647 aa16.39■□□□□ 0.21
VPS72-205ENST00000491094 EEA1Q15075 1411 aa16.36■□□□□ 0.21
VPS72-205ENST00000491094 EIF4G1Q04637 1599 aaKnown RBP16.35■□□□□ 0.21
VPS72-205ENST00000491094 ATP1B4Q9UN42 357 aaPredicted RBP16.32■□□□□ 0.2
VPS72-205ENST00000491094 KANK4Q5T7N3 995 aaPredicted RBP16.29■□□□□ 0.2
VPS72-205ENST00000491094 CEP164Q9UPV0 1460 aa16.28■□□□□ 0.2
VPS72-205ENST00000491094 RAPGEF2Q9Y4G8 1499 aa16.27■□□□□ 0.2
VPS72-205ENST00000491094 VPS8Q8N3P4 1428 aa16.23■□□□□ 0.19
VPS72-205ENST00000491094 BCANQ96GW7 911 aa16.19■□□□□ 0.18
VPS72-205ENST00000491094 SYNJ1O43426 1573 aa16.17■□□□□ 0.18
VPS72-205ENST00000491094 P3H3Q8IVL6 736 aa16.17■□□□□ 0.18
VPS72-205ENST00000491094 HIRIP3Q9BW71 556 aaPredicted RBP16.15■□□□□ 0.18
VPS72-205ENST00000491094 KCNH8Q96L42 1107 aa16.14■□□□□ 0.17
VPS72-205ENST00000491094 BAZ1BQ9UIG0 1483 aaKnown RBP16.14■□□□□ 0.17
VPS72-205ENST00000491094 FAM50AQ14320 339 aaKnown RBP16.13■□□□□ 0.17
VPS72-205ENST00000491094 DHX57Q6P158 1386 aaKnown RBP16.1■□□□□ 0.17
VPS72-205ENST00000491094 ATAD2BQ9ULI0 1458 aa16.08■□□□□ 0.16
VPS72-205ENST00000491094 SUPT16HQ9Y5B9 1047 aaKnown RBP16.08■□□□□ 0.16
VPS72-205ENST00000491094 DDX10Q13206 875 aaKnown RBP16.08■□□□□ 0.16
VPS72-205ENST00000491094 KIF21BO75037 1637 aa16.06■□□□□ 0.16
VPS72-205ENST00000491094 SIN3AQ96ST3 1273 aa16.05■□□□□ 0.16
VPS72-205ENST00000491094 UNC13AQ9UPW8 1703 aa16.04■□□□□ 0.16
VPS72-205ENST00000491094 MYT1Q01538 1121 aa16.01■□□□□ 0.15
VPS72-205ENST00000491094 BICRAQ9NZM4 1560 aa15.99■□□□□ 0.15
VPS72-205ENST00000491094 CCNB3Q8WWL7 1395 aa15.96■□□□□ 0.15
VPS72-205ENST00000491094 TRIM52Q96A61 297 aa15.95■□□□□ 0.14
VPS72-205ENST00000491094 FKBP8Q14318 412 aa15.95■□□□□ 0.14
VPS72-205ENST00000491094 ARAP1Q96P48 1450 aa15.95■□□□□ 0.14
VPS72-205ENST00000491094 CLSPNQ9HAW4 1339 aa15.94■□□□□ 0.14
VPS72-205ENST00000491094 KIF27Q86VH2 1401 aa15.91■□□□□ 0.14
VPS72-205ENST00000491094 RAB3GAP2Q9H2M9 1393 aa15.91■□□□□ 0.14
VPS72-205ENST00000491094 TSHZ2Q9NRE2 1034 aa15.87■□□□□ 0.13
VPS72-205ENST00000491094 NEFLP07196 543 aa15.85■□□□□ 0.13
VPS72-205ENST00000491094 PRXQ9BXM0 1461 aa15.85■□□□□ 0.13
VPS72-205ENST00000491094 CNGB1Q14028 1251 aaPredicted RBP15.81■□□□□ 0.12
VPS72-205ENST00000491094 CUX2O14529 1486 aa15.81■□□□□ 0.12
VPS72-205ENST00000491094 ANP32CO43423 234 aa15.8■□□□□ 0.12
VPS72-205ENST00000491094 TOP2BQ02880 1626 aa15.8■□□□□ 0.12
VPS72-205ENST00000491094 ARHGAP35Q9NRY4 1499 aa15.79■□□□□ 0.12
VPS72-205ENST00000491094 PEG3Q9GZU2 1588 aa15.79■□□□□ 0.12
VPS72-205ENST00000491094 ARID3CA6NKF2 412 aa15.77■□□□□ 0.12
VPS72-205ENST00000491094 IRX6P78412 446 aaPredicted RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms