RNA–Protein interactions for RNA: ENST00000488535.2

ABCA2-219, Transcript of ATP binding cassette subfamily A member 2, humanhuman

TSL 1 (best)

Gene ABCA2, Length 3,327 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA2-219ENST00000488535 NISCHQ9Y2I1 1504 aa25.81■■□□□ 1.72
ABCA2-219ENST00000488535 DCAF8L2P0C7V8 631 aa22.48■■□□□ 1.19
ABCA2-219ENST00000488535 SHROOM4Q9ULL8 1493 aa22.35■■□□□ 1.17
ABCA2-219ENST00000488535 SUPT5HO00267 1087 aaKnown RBP22.14■■□□□ 1.13
ABCA2-219ENST00000488535 PPARGC1BQ86YN6 1023 aaKnown RBP22.03■■□□□ 1.12
ABCA2-219ENST00000488535 PCGF6Q9BYE7 350 aa21.99■■□□□ 1.11
ABCA2-219ENST00000488535 HRCP23327 699 aa21.98■■□□□ 1.11
ABCA2-219ENST00000488535 CCDC180Q9P1Z9 1646 aa21.85■■□□□ 1.09
ABCA2-219ENST00000488535 ZCCHC6Q5VYS8 1495 aaKnown RBP21.66■■□□□ 1.06
ABCA2-219ENST00000488535 ABCC9O60706 1549 aa21.31■■□□□ 1
ABCA2-219ENST00000488535 MYO15BQ96JP2 1530 aa21.23■□□□□ 0.99
ABCA2-219ENST00000488535 CHIC1Q5VXU3 224 aa21.22■□□□□ 0.99
ABCA2-219ENST00000488535 LOC105371045A0A1W2PR82 267 aa21.16■□□□□ 0.98
ABCA2-219ENST00000488535 PELP1Q8IZL8 1130 aaKnown RBP21.15■□□□□ 0.98
ABCA2-219ENST00000488535 SCAF1Q9H7N4 1312 aaKnown RBP21■□□□□ 0.95
ABCA2-219ENST00000488535 EHMT2Q96KQ7 1210 aa21■□□□□ 0.95
ABCA2-219ENST00000488535 DCAF1Q9Y4B6 1507 aa20.9■□□□□ 0.94
ABCA2-219ENST00000488535 SCRIBQ14160 1630 aa20.87■□□□□ 0.93
ABCA2-219ENST00000488535 TRIM26Q12899 539 aaPredicted RBP20.81■□□□□ 0.92
ABCA2-219ENST00000488535 FAM9AQ8IZU1 332 aaPredicted RBP20.66■□□□□ 0.9
ABCA2-219ENST00000488535 ZEB1P37275 1124 aaPredicted RBP20.53■□□□□ 0.88
ABCA2-219ENST00000488535 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.87
ABCA2-219ENST00000488535 NACADO15069 1562 aa20.5■□□□□ 0.87
ABCA2-219ENST00000488535 GTF3C3Q9Y5Q9 886 aa20.49■□□□□ 0.87
ABCA2-219ENST00000488535 NEUROD1Q13562 356 aa20.48■□□□□ 0.87
ABCA2-219ENST00000488535 TTBK1Q5TCY1 1321 aaPredicted RBP20.42■□□□□ 0.86
ABCA2-219ENST00000488535 ACIN1Q9UKV3 1341 aaKnown RBP20.39■□□□□ 0.85
ABCA2-219ENST00000488535 YTHDC1Q96MU7 727 aaKnown RBP20.38■□□□□ 0.85
ABCA2-219ENST00000488535 RSF1Q96T23 1441 aaPredicted RBP20.37■□□□□ 0.85
ABCA2-219ENST00000488535 CECR2Q9BXF3 1484 aa20.36■□□□□ 0.85
ABCA2-219ENST00000488535 RB1CC1Q8TDY2 1594 aa20.35■□□□□ 0.85
ABCA2-219ENST00000488535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.35■□□□□ 0.85
ABCA2-219ENST00000488535 CCER1Q8TC90 406 aaPredicted RBP20.3■□□□□ 0.84
ABCA2-219ENST00000488535 CENPBP07199 599 aaPredicted RBP20.26■□□□□ 0.83
ABCA2-219ENST00000488535 MYT1Q01538 1121 aa20.23■□□□□ 0.83
ABCA2-219ENST00000488535 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
ABCA2-219ENST00000488535 DIEXFQ68CQ4 756 aaKnown RBP20.17■□□□□ 0.82
ABCA2-219ENST00000488535 MROH2BQ7Z745 1585 aa20.14■□□□□ 0.82
ABCA2-219ENST00000488535 WIZO95785 1651 aa19.97■□□□□ 0.79
ABCA2-219ENST00000488535 BAZ1AQ9NRL2 1556 aaPredicted RBP19.86■□□□□ 0.77
ABCA2-219ENST00000488535 UNC13AQ9UPW8 1703 aa19.8■□□□□ 0.76
ABCA2-219ENST00000488535 BICRAQ9NZM4 1560 aa19.71■□□□□ 0.75
ABCA2-219ENST00000488535 SMARCA4P51532 1647 aa19.7■□□□□ 0.74
ABCA2-219ENST00000488535 MIER1Q8N108 512 aa19.65■□□□□ 0.74
ABCA2-219ENST00000488535 CCDC88BA6NC98 1476 aa19.63■□□□□ 0.73
ABCA2-219ENST00000488535 ZNF316A6NFI3 1004 aaPredicted RBP19.6■□□□□ 0.73
ABCA2-219ENST00000488535 TOP2AP11388 1531 aaKnown RBP19.55■□□□□ 0.72
ABCA2-219ENST00000488535 HNRNPUL2Q1KMD3 747 aaKnown RBP19.53■□□□□ 0.72
ABCA2-219ENST00000488535 ABCC8Q09428 1581 aa19.51■□□□□ 0.71
ABCA2-219ENST00000488535 BAZ1BQ9UIG0 1483 aaKnown RBP19.45■□□□□ 0.7
ABCA2-219ENST00000488535 BCANQ96GW7 911 aa19.45■□□□□ 0.7
ABCA2-219ENST00000488535 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
ABCA2-219ENST00000488535 ATAD2BQ9ULI0 1458 aa19.44■□□□□ 0.7
ABCA2-219ENST00000488535 RANGAP1P46060 587 aaPredicted RBP19.43■□□□□ 0.7
ABCA2-219ENST00000488535 UBTFP17480 764 aaKnown RBP19.41■□□□□ 0.7
ABCA2-219ENST00000488535 BCL11AQ9H165 835 aa19.4■□□□□ 0.7
ABCA2-219ENST00000488535 SOGA1O94964 1423 aa19.3■□□□□ 0.68
ABCA2-219ENST00000488535 SUPT16HQ9Y5B9 1047 aaKnown RBP19.27■□□□□ 0.68
ABCA2-219ENST00000488535 CSRNP3Q8WYN3 585 aa19.25■□□□□ 0.67
ABCA2-219ENST00000488535 ANP32EQ9BTT0 268 aa19.25■□□□□ 0.67
ABCA2-219ENST00000488535 WRNQ14191 1432 aaPredicted RBP eCLIP19.24■□□□□ 0.67
ABCA2-219ENST00000488535 EIF4G1Q04637 1599 aaKnown RBP19.22■□□□□ 0.67
ABCA2-219ENST00000488535 RUSC2Q8N2Y8 1516 aa19.21■□□□□ 0.67
ABCA2-219ENST00000488535 TSHZ2Q9NRE2 1034 aa19.18■□□□□ 0.66
ABCA2-219ENST00000488535 PEG3Q9GZU2 1588 aa19.13■□□□□ 0.65
ABCA2-219ENST00000488535 NCAPD3P42695 1498 aa19.06■□□□□ 0.64
ABCA2-219ENST00000488535 ITGAEP38570 1179 aa19.04■□□□□ 0.64
ABCA2-219ENST00000488535 APLP2Q06481 763 aa19.03■□□□□ 0.64
ABCA2-219ENST00000488535 FKBP8Q14318 412 aa19.02■□□□□ 0.63
ABCA2-219ENST00000488535 SYNJ1O43426 1573 aa18.99■□□□□ 0.63
ABCA2-219ENST00000488535 KCNH8Q96L42 1107 aa18.99■□□□□ 0.63
ABCA2-219ENST00000488535 CEP162Q5TB80 1403 aa18.96■□□□□ 0.63
ABCA2-219ENST00000488535 DNAJC5BQ9UF47 199 aa18.96■□□□□ 0.63
ABCA2-219ENST00000488535 ERICH6Q7L0X2 663 aa18.91■□□□□ 0.62
ABCA2-219ENST00000488535 CC2D2AQ9P2K1 1620 aa18.89■□□□□ 0.62
ABCA2-219ENST00000488535 HMGXB3Q12766 1538 aa18.89■□□□□ 0.61
ABCA2-219ENST00000488535 EEA1Q15075 1411 aa18.88■□□□□ 0.61
ABCA2-219ENST00000488535 NEFLP07196 543 aa18.87■□□□□ 0.61
ABCA2-219ENST00000488535 TNIKQ9UKE5 1360 aa18.87■□□□□ 0.61
ABCA2-219ENST00000488535 GOLGA3Q08378 1498 aa18.86■□□□□ 0.61
ABCA2-219ENST00000488535 CADPSQ9ULU8 1353 aa18.84■□□□□ 0.61
ABCA2-219ENST00000488535 TRIM52Q96A61 297 aa18.82■□□□□ 0.6
ABCA2-219ENST00000488535 RBM19Q9Y4C8 960 aaKnown RBP18.8■□□□□ 0.6
ABCA2-219ENST00000488535 CFTRP13569 1480 aa18.8■□□□□ 0.6
ABCA2-219ENST00000488535 RAPGEF2Q9Y4G8 1499 aa18.8■□□□□ 0.6
ABCA2-219ENST00000488535 CEP164Q9UPV0 1460 aa18.78■□□□□ 0.6
ABCA2-219ENST00000488535 HIRIP3Q9BW71 556 aaPredicted RBP18.77■□□□□ 0.59
ABCA2-219ENST00000488535 CLIP1P30622 1438 aa18.76■□□□□ 0.59
ABCA2-219ENST00000488535 NESP48681 1621 aa18.75■□□□□ 0.59
ABCA2-219ENST00000488535 IRX6P78412 446 aaPredicted RBP18.75■□□□□ 0.59
ABCA2-219ENST00000488535 CUX1P39880 1505 aa18.74■□□□□ 0.59
ABCA2-219ENST00000488535 ATP1B4Q9UN42 357 aaPredicted RBP18.74■□□□□ 0.59
ABCA2-219ENST00000488535 DDX10Q13206 875 aaKnown RBP18.73■□□□□ 0.59
ABCA2-219ENST00000488535 CLSPNQ9HAW4 1339 aa18.72■□□□□ 0.59
ABCA2-219ENST00000488535 P3H3Q8IVL6 736 aa18.7■□□□□ 0.58
ABCA2-219ENST00000488535 TOP2BQ02880 1626 aa18.7■□□□□ 0.58
ABCA2-219ENST00000488535 KIF27Q86VH2 1401 aa18.7■□□□□ 0.58
ABCA2-219ENST00000488535 CUX2O14529 1486 aa18.68■□□□□ 0.58
ABCA2-219ENST00000488535 FANCD2Q9BXW9 1451 aa18.65■□□□□ 0.58
ABCA2-219ENST00000488535 FGD5Q6ZNL6 1462 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms