RNA–Protein interactions for RNA: ENST00000486715.5

GFM1-210, Transcript of G elongation factor mitochondrial 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GFM1, Length 3,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GFM1-210ENST00000486715 NISCHQ9Y2I1 1504 aa18.59■□□□□ 0.57
GFM1-210ENST00000486715 PPARGC1BQ86YN6 1023 aaKnown RBP17.14■□□□□ 0.34
GFM1-210ENST00000486715 HRCP23327 699 aa17.09■□□□□ 0.33
GFM1-210ENST00000486715 PCGF6Q9BYE7 350 aa17.06■□□□□ 0.32
GFM1-210ENST00000486715 SUPT5HO00267 1087 aaKnown RBP17.02■□□□□ 0.32
GFM1-210ENST00000486715 CCDC180Q9P1Z9 1646 aa17■□□□□ 0.31
GFM1-210ENST00000486715 SHROOM4Q9ULL8 1493 aa16.93■□□□□ 0.3
GFM1-210ENST00000486715 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
GFM1-210ENST00000486715 SCAF1Q9H7N4 1312 aaKnown RBP16.4■□□□□ 0.22
GFM1-210ENST00000486715 CHIC1Q5VXU3 224 aa16.31■□□□□ 0.2
GFM1-210ENST00000486715 LOC105371045A0A1W2PR82 267 aa16.31■□□□□ 0.2
GFM1-210ENST00000486715 MYO15BQ96JP2 1530 aa16.29■□□□□ 0.2
GFM1-210ENST00000486715 ABCC9O60706 1549 aa16.27■□□□□ 0.19
GFM1-210ENST00000486715 EHMT2Q96KQ7 1210 aa16.19■□□□□ 0.18
GFM1-210ENST00000486715 DCAF8L2P0C7V8 631 aa16.14■□□□□ 0.17
GFM1-210ENST00000486715 TRIM26Q12899 539 aaPredicted RBP16.09■□□□□ 0.17
GFM1-210ENST00000486715 GTF3C3Q9Y5Q9 886 aa15.99■□□□□ 0.15
GFM1-210ENST00000486715 MYT1Q01538 1121 aa15.98■□□□□ 0.15
GFM1-210ENST00000486715 NEUROD1Q13562 356 aa15.96■□□□□ 0.15
GFM1-210ENST00000486715 ZEB1P37275 1124 aaPredicted RBP15.92■□□□□ 0.14
GFM1-210ENST00000486715 RB1CC1Q8TDY2 1594 aa15.92■□□□□ 0.14
GFM1-210ENST00000486715 NACADO15069 1562 aa15.91■□□□□ 0.14
GFM1-210ENST00000486715 FAM9AQ8IZU1 332 aaPredicted RBP15.91■□□□□ 0.14
GFM1-210ENST00000486715 ACIN1Q9UKV3 1341 aaKnown RBP15.9■□□□□ 0.14
GFM1-210ENST00000486715 YTHDC1Q96MU7 727 aaKnown RBP15.87■□□□□ 0.13
GFM1-210ENST00000486715 CENPBP07199 599 aaPredicted RBP15.8■□□□□ 0.12
GFM1-210ENST00000486715 TTBK1Q5TCY1 1321 aaPredicted RBP15.77■□□□□ 0.12
GFM1-210ENST00000486715 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.75■□□□□ 0.11
GFM1-210ENST00000486715 CCER1Q8TC90 406 aaPredicted RBP15.72■□□□□ 0.11
GFM1-210ENST00000486715 DCAF1Q9Y4B6 1507 aa15.71■□□□□ 0.11
GFM1-210ENST00000486715 UNC13AQ9UPW8 1703 aa15.66■□□□□ 0.1
GFM1-210ENST00000486715 DIEXFQ68CQ4 756 aaKnown RBP15.66■□□□□ 0.1
GFM1-210ENST00000486715 BICRAQ9NZM4 1560 aa15.48■□□□□ 0.07
GFM1-210ENST00000486715 TRIM41Q8WV44 630 aa15.48■□□□□ 0.07
GFM1-210ENST00000486715 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
GFM1-210ENST00000486715 BCL11AQ9H165 835 aa15.29■□□□□ 0.04
GFM1-210ENST00000486715 MIER1Q8N108 512 aa15.24■□□□□ 0.03
GFM1-210ENST00000486715 ZNF316A6NFI3 1004 aaPredicted RBP15.18■□□□□ 0.02
GFM1-210ENST00000486715 DNAJC5BQ9UF47 199 aa15.18■□□□□ 0.02
GFM1-210ENST00000486715 BCANQ96GW7 911 aa15.16■□□□□ 0.02
GFM1-210ENST00000486715 ANP32EQ9BTT0 268 aa15.08■□□□□ 0.01
GFM1-210ENST00000486715 CSRNP3Q8WYN3 585 aa15.07■□□□□ 0
GFM1-210ENST00000486715 HNRNPUL2Q1KMD3 747 aaKnown RBP15.06■□□□□ 0
GFM1-210ENST00000486715 EIF4G1Q04637 1599 aaKnown RBP15□□□□□ -0.01
GFM1-210ENST00000486715 SUPT16HQ9Y5B9 1047 aaKnown RBP14.99□□□□□ -0.01
GFM1-210ENST00000486715 CC2D2AQ9P2K1 1620 aa14.98□□□□□ -0.01
GFM1-210ENST00000486715 SCRIBQ14160 1630 aa14.97□□□□□ -0.01
GFM1-210ENST00000486715 TSHZ2Q9NRE2 1034 aa14.96□□□□□ -0.01
GFM1-210ENST00000486715 PABPN1Q86U42 306 aaKnown RBP eCLIP14.91□□□□□ -0.02
GFM1-210ENST00000486715 RANGAP1P46060 587 aaPredicted RBP14.91□□□□□ -0.02
GFM1-210ENST00000486715 UBTFP17480 764 aaKnown RBP14.84□□□□□ -0.03
GFM1-210ENST00000486715 ITGAEP38570 1179 aa14.82□□□□□ -0.04
GFM1-210ENST00000486715 ERICH6Q7L0X2 663 aa14.81□□□□□ -0.04
GFM1-210ENST00000486715 CECR2Q9BXF3 1484 aa14.8□□□□□ -0.04
GFM1-210ENST00000486715 FKBP8Q14318 412 aa14.79□□□□□ -0.04
GFM1-210ENST00000486715 PRKCSHP14314 528 aaPredicted RBP14.73□□□□□ -0.05
GFM1-210ENST00000486715 KCNH8Q96L42 1107 aa14.7□□□□□ -0.06
GFM1-210ENST00000486715 NEFLP07196 543 aa14.69□□□□□ -0.06
GFM1-210ENST00000486715 RBM19Q9Y4C8 960 aaKnown RBP14.66□□□□□ -0.06
GFM1-210ENST00000486715 APLP2Q06481 763 aa14.65□□□□□ -0.06
GFM1-210ENST00000486715 PEG3Q9GZU2 1588 aa14.63□□□□□ -0.07
GFM1-210ENST00000486715 HMGXB3Q12766 1538 aa14.61□□□□□ -0.07
GFM1-210ENST00000486715 NCAPD3P42695 1498 aa14.6□□□□□ -0.07
GFM1-210ENST00000486715 TRIM52Q96A61 297 aa14.59□□□□□ -0.07
GFM1-210ENST00000486715 IRX6P78412 446 aaPredicted RBP14.57□□□□□ -0.08
GFM1-210ENST00000486715 RSF1Q96T23 1441 aaPredicted RBP14.57□□□□□ -0.08
GFM1-210ENST00000486715 CLSPNQ9HAW4 1339 aa14.54□□□□□ -0.08
GFM1-210ENST00000486715 SMARCA4P51532 1647 aa14.53□□□□□ -0.08
GFM1-210ENST00000486715 SMARCA2P51531 1590 aa14.52□□□□□ -0.08
GFM1-210ENST00000486715 NBR1Q14596 966 aa14.51□□□□□ -0.09
GFM1-210ENST00000486715 HIRIP3Q9BW71 556 aaPredicted RBP14.49□□□□□ -0.09
GFM1-210ENST00000486715 DDX10Q13206 875 aaKnown RBP14.49□□□□□ -0.09
GFM1-210ENST00000486715 CEP162Q5TB80 1403 aa14.49□□□□□ -0.09
GFM1-210ENST00000486715 MSH5O43196 834 aa14.48□□□□□ -0.09
GFM1-210ENST00000486715 ANO8Q9HCE9 1232 aaPredicted RBP14.46□□□□□ -0.09
GFM1-210ENST00000486715 BAZ1AQ9NRL2 1556 aaPredicted RBP14.46□□□□□ -0.1
GFM1-210ENST00000486715 ATAD2BQ9ULI0 1458 aa14.44□□□□□ -0.1
GFM1-210ENST00000486715 CUX2O14529 1486 aa14.43□□□□□ -0.1
GFM1-210ENST00000486715 CCDC136Q96JN2 1154 aa14.43□□□□□ -0.1
GFM1-210ENST00000486715 RTN4Q9NQC3 1192 aaKnown RBP14.43□□□□□ -0.1
GFM1-210ENST00000486715 DEKP35659 375 aaKnown RBP14.42□□□□□ -0.1
GFM1-210ENST00000486715 CDK11AQ9UQ88 783 aaPredicted RBP14.4□□□□□ -0.1
GFM1-210ENST00000486715 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.32□□□□□ -0.12
GFM1-210ENST00000486715 LAMC3Q9Y6N6 1575 aa14.32□□□□□ -0.12
GFM1-210ENST00000486715 SOGA1O94964 1423 aa14.31□□□□□ -0.12
GFM1-210ENST00000486715 SALL2Q9Y467 1007 aaPredicted RBP14.29□□□□□ -0.12
GFM1-210ENST00000486715 CNGB1Q14028 1251 aaPredicted RBP14.28□□□□□ -0.12
GFM1-210ENST00000486715 THOC2Q8NI27 1593 aaKnown RBP14.27□□□□□ -0.13
GFM1-210ENST00000486715 HNRNPUQ00839 825 aaKnown RBP eCLIP14.25□□□□□ -0.13
GFM1-210ENST00000486715 ANP32CO43423 234 aa14.24□□□□□ -0.13
GFM1-210ENST00000486715 CCDC88BA6NC98 1476 aa14.24□□□□□ -0.13
GFM1-210ENST00000486715 WRNQ14191 1432 aaPredicted RBP eCLIP14.23□□□□□ -0.13
GFM1-210ENST00000486715 RTL5Q5HYW3 569 aaPredicted RBP14.23□□□□□ -0.13
GFM1-210ENST00000486715 TNIKQ9UKE5 1360 aa14.22□□□□□ -0.13
GFM1-210ENST00000486715 BAZ1BQ9UIG0 1483 aaKnown RBP14.22□□□□□ -0.13
GFM1-210ENST00000486715 ABCC8Q09428 1581 aa14.21□□□□□ -0.13
GFM1-210ENST00000486715 EIF5BO60841 1220 aaKnown RBP14.21□□□□□ -0.13
GFM1-210ENST00000486715 RUSC2Q8N2Y8 1516 aa14.19□□□□□ -0.14
GFM1-210ENST00000486715 SENP3-EIF4A1A0A087X0R7 540 aa14.19□□□□□ -0.14
GFM1-210ENST00000486715 MROH2BQ7Z745 1585 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms