RNA–Protein interactions for RNA: ENST00000484933.6

LINC01140-206, Transcript of long intergenic non-protein coding RNA 1140, humanhuman

TSL 1 (best) BASIC

Gene LINC01140, Length 3,368 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01140-206ENST00000484933 NISCHQ9Y2I1 1504 aa19.24■□□□□ 0.67
LINC01140-206ENST00000484933 DCAF8L2P0C7V8 631 aa17.25■□□□□ 0.35
LINC01140-206ENST00000484933 SHROOM4Q9ULL8 1493 aa17.16■□□□□ 0.34
LINC01140-206ENST00000484933 HRCP23327 699 aa17.12■□□□□ 0.33
LINC01140-206ENST00000484933 PPARGC1BQ86YN6 1023 aaKnown RBP17.08■□□□□ 0.33
LINC01140-206ENST00000484933 SUPT5HO00267 1087 aaKnown RBP17.06■□□□□ 0.32
LINC01140-206ENST00000484933 PELP1Q8IZL8 1130 aaKnown RBP16.94■□□□□ 0.3
LINC01140-206ENST00000484933 PCGF6Q9BYE7 350 aa16.91■□□□□ 0.3
LINC01140-206ENST00000484933 ABCC9O60706 1549 aa16.77■□□□□ 0.28
LINC01140-206ENST00000484933 SCAF1Q9H7N4 1312 aaKnown RBP16.51■□□□□ 0.23
LINC01140-206ENST00000484933 CHIC1Q5VXU3 224 aa16.43■□□□□ 0.22
LINC01140-206ENST00000484933 CCDC180Q9P1Z9 1646 aa16.42■□□□□ 0.22
LINC01140-206ENST00000484933 MYO15BQ96JP2 1530 aa16.4■□□□□ 0.22
LINC01140-206ENST00000484933 MYT1Q01538 1121 aa16.32■□□□□ 0.2
LINC01140-206ENST00000484933 LOC105371045A0A1W2PR82 267 aa16.24■□□□□ 0.19
LINC01140-206ENST00000484933 PABPN1Q86U42 306 aaKnown RBP eCLIP16.09■□□□□ 0.17
LINC01140-206ENST00000484933 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
LINC01140-206ENST00000484933 GTF3C3Q9Y5Q9 886 aa16■□□□□ 0.15
LINC01140-206ENST00000484933 ZCCHC6Q5VYS8 1495 aaKnown RBP16■□□□□ 0.15
LINC01140-206ENST00000484933 NEUROD1Q13562 356 aa15.99■□□□□ 0.15
LINC01140-206ENST00000484933 TRIM26Q12899 539 aaPredicted RBP15.98■□□□□ 0.15
LINC01140-206ENST00000484933 ACIN1Q9UKV3 1341 aaKnown RBP15.94■□□□□ 0.14
LINC01140-206ENST00000484933 FAM9AQ8IZU1 332 aaPredicted RBP15.87■□□□□ 0.13
LINC01140-206ENST00000484933 ZEB1P37275 1124 aaPredicted RBP15.87■□□□□ 0.13
LINC01140-206ENST00000484933 DCAF1Q9Y4B6 1507 aa15.81■□□□□ 0.12
LINC01140-206ENST00000484933 SCRIBQ14160 1630 aa15.81■□□□□ 0.12
LINC01140-206ENST00000484933 CENPBP07199 599 aaPredicted RBP15.76■□□□□ 0.11
LINC01140-206ENST00000484933 YTHDC1Q96MU7 727 aaKnown RBP15.69■□□□□ 0.1
LINC01140-206ENST00000484933 TRIM41Q8WV44 630 aa15.65■□□□□ 0.1
LINC01140-206ENST00000484933 RB1CC1Q8TDY2 1594 aa15.63■□□□□ 0.09
LINC01140-206ENST00000484933 DIEXFQ68CQ4 756 aaKnown RBP15.58■□□□□ 0.08
LINC01140-206ENST00000484933 NACADO15069 1562 aa15.58■□□□□ 0.08
LINC01140-206ENST00000484933 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
LINC01140-206ENST00000484933 TTBK1Q5TCY1 1321 aaPredicted RBP15.54■□□□□ 0.08
LINC01140-206ENST00000484933 BCL11AQ9H165 835 aa15.54■□□□□ 0.08
LINC01140-206ENST00000484933 CCER1Q8TC90 406 aaPredicted RBP15.5■□□□□ 0.07
LINC01140-206ENST00000484933 CECR2Q9BXF3 1484 aa15.33■□□□□ 0.04
LINC01140-206ENST00000484933 UNC13AQ9UPW8 1703 aa15.24■□□□□ 0.03
LINC01140-206ENST00000484933 RSF1Q96T23 1441 aaPredicted RBP15.23■□□□□ 0.03
LINC01140-206ENST00000484933 DNAJC5BQ9UF47 199 aa15.22■□□□□ 0.03
LINC01140-206ENST00000484933 ANP32EQ9BTT0 268 aa15.22■□□□□ 0.03
LINC01140-206ENST00000484933 CSRNP3Q8WYN3 585 aa15.2■□□□□ 0.02
LINC01140-206ENST00000484933 BICRAQ9NZM4 1560 aa15.19■□□□□ 0.02
LINC01140-206ENST00000484933 MIER1Q8N108 512 aa15.16■□□□□ 0.02
LINC01140-206ENST00000484933 PRKCSHP14314 528 aaPredicted RBP15.13■□□□□ 0.01
LINC01140-206ENST00000484933 ZNF316A6NFI3 1004 aaPredicted RBP15.08■□□□□ 0
LINC01140-206ENST00000484933 MROH2BQ7Z745 1585 aa15.06■□□□□ 0
LINC01140-206ENST00000484933 TSHZ2Q9NRE2 1034 aa15.03■□□□□ -0
LINC01140-206ENST00000484933 SUPT16HQ9Y5B9 1047 aaKnown RBP15□□□□□ -0.01
LINC01140-206ENST00000484933 BCANQ96GW7 911 aa15□□□□□ -0.01
LINC01140-206ENST00000484933 UBTFP17480 764 aaKnown RBP14.96□□□□□ -0.01
LINC01140-206ENST00000484933 HNRNPUL2Q1KMD3 747 aaKnown RBP14.96□□□□□ -0.01
LINC01140-206ENST00000484933 RANGAP1P46060 587 aaPredicted RBP14.92□□□□□ -0.02
LINC01140-206ENST00000484933 WIZO95785 1651 aa14.91□□□□□ -0.02
LINC01140-206ENST00000484933 EIF4G1Q04637 1599 aaKnown RBP14.86□□□□□ -0.03
LINC01140-206ENST00000484933 BAZ1AQ9NRL2 1556 aaPredicted RBP14.81□□□□□ -0.04
LINC01140-206ENST00000484933 SMARCA4P51532 1647 aa14.79□□□□□ -0.04
LINC01140-206ENST00000484933 CEP162Q5TB80 1403 aa14.78□□□□□ -0.04
LINC01140-206ENST00000484933 CC2D2AQ9P2K1 1620 aa14.78□□□□□ -0.04
LINC01140-206ENST00000484933 ATAD2BQ9ULI0 1458 aa14.76□□□□□ -0.05
LINC01140-206ENST00000484933 BAZ1BQ9UIG0 1483 aaKnown RBP14.75□□□□□ -0.05
LINC01140-206ENST00000484933 ABCC8Q09428 1581 aa14.73□□□□□ -0.05
LINC01140-206ENST00000484933 SOGA1O94964 1423 aa14.72□□□□□ -0.05
LINC01140-206ENST00000484933 CCDC88BA6NC98 1476 aa14.72□□□□□ -0.05
LINC01140-206ENST00000484933 ITGAEP38570 1179 aa14.71□□□□□ -0.06
LINC01140-206ENST00000484933 ERICH6Q7L0X2 663 aa14.7□□□□□ -0.06
LINC01140-206ENST00000484933 FKBP8Q14318 412 aa14.69□□□□□ -0.06
LINC01140-206ENST00000484933 RBM19Q9Y4C8 960 aaKnown RBP14.69□□□□□ -0.06
LINC01140-206ENST00000484933 APLP2Q06481 763 aa14.69□□□□□ -0.06
LINC01140-206ENST00000484933 ANO8Q9HCE9 1232 aaPredicted RBP14.65□□□□□ -0.06
LINC01140-206ENST00000484933 RUSC2Q8N2Y8 1516 aa14.63□□□□□ -0.07
LINC01140-206ENST00000484933 CLSPNQ9HAW4 1339 aa14.61□□□□□ -0.07
LINC01140-206ENST00000484933 TNIKQ9UKE5 1360 aa14.61□□□□□ -0.07
LINC01140-206ENST00000484933 WRNQ14191 1432 aaPredicted RBP eCLIP14.61□□□□□ -0.07
LINC01140-206ENST00000484933 KCNH8Q96L42 1107 aa14.58□□□□□ -0.08
LINC01140-206ENST00000484933 NESP48681 1621 aa14.58□□□□□ -0.08
LINC01140-206ENST00000484933 MSH5O43196 834 aa14.56□□□□□ -0.08
LINC01140-206ENST00000484933 SMARCA2P51531 1590 aa14.55□□□□□ -0.08
LINC01140-206ENST00000484933 NEFLP07196 543 aa14.54□□□□□ -0.08
LINC01140-206ENST00000484933 CCDC136Q96JN2 1154 aa14.54□□□□□ -0.08
LINC01140-206ENST00000484933 NCAPD3P42695 1498 aa14.51□□□□□ -0.09
LINC01140-206ENST00000484933 DEKP35659 375 aaKnown RBP14.49□□□□□ -0.09
LINC01140-206ENST00000484933 TOP2AP11388 1531 aaKnown RBP14.48□□□□□ -0.09
LINC01140-206ENST00000484933 GOLGA3Q08378 1498 aa14.46□□□□□ -0.09
LINC01140-206ENST00000484933 CLIP1P30622 1438 aa14.45□□□□□ -0.1
LINC01140-206ENST00000484933 NBR1Q14596 966 aa14.45□□□□□ -0.1
LINC01140-206ENST00000484933 SALL2Q9Y467 1007 aaPredicted RBP14.45□□□□□ -0.1
LINC01140-206ENST00000484933 RTN4Q9NQC3 1192 aaKnown RBP14.43□□□□□ -0.1
LINC01140-206ENST00000484933 TRIM52Q96A61 297 aa14.42□□□□□ -0.1
LINC01140-206ENST00000484933 IRX6P78412 446 aaPredicted RBP14.39□□□□□ -0.11
LINC01140-206ENST00000484933 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.39□□□□□ -0.11
LINC01140-206ENST00000484933 EEA1Q15075 1411 aa14.36□□□□□ -0.11
LINC01140-206ENST00000484933 CADPSQ9ULU8 1353 aa14.36□□□□□ -0.11
LINC01140-206ENST00000484933 ERCC6Q03468 1493 aa14.35□□□□□ -0.11
LINC01140-206ENST00000484933 KANK4Q5T7N3 995 aaPredicted RBP14.32□□□□□ -0.12
LINC01140-206ENST00000484933 VPS8Q8N3P4 1428 aa14.31□□□□□ -0.12
LINC01140-206ENST00000484933 HIRIP3Q9BW71 556 aaPredicted RBP14.31□□□□□ -0.12
LINC01140-206ENST00000484933 CDK11AQ9UQ88 783 aaPredicted RBP14.31□□□□□ -0.12
LINC01140-206ENST00000484933 DHX57Q6P158 1386 aaKnown RBP14.3□□□□□ -0.12
LINC01140-206ENST00000484933 CEP164Q9UPV0 1460 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms