RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 AEBP2Q6ZN18 517 aaPredicted RBP20.62■□□□□ 0.89
PTCD3-215ENST00000484203 CHIC1Q5VXU3 224 aa19.75■□□□□ 0.75
PTCD3-215ENST00000484203 SENP3Q9H4L4 574 aaPredicted RBP17.7■□□□□ 0.42
PTCD3-215ENST00000484203 PHF23Q9BUL5 403 aaPredicted RBP17.43■□□□□ 0.38
PTCD3-215ENST00000484203 FOXD1Q16676 465 aa16.4■□□□□ 0.22
PTCD3-215ENST00000484203 PLPPR3Q6T4P5 718 aa16.01■□□□□ 0.15
PTCD3-215ENST00000484203 MSH5O43196 834 aa15.41■□□□□ 0.06
PTCD3-215ENST00000484203 PIAS4Q8N2W9 510 aaPredicted RBP15.39■□□□□ 0.05
PTCD3-215ENST00000484203 PPP6R1Q9UPN7 881 aa15.36■□□□□ 0.05
PTCD3-215ENST00000484203 ADRA2BP18089 450 aa15.34■□□□□ 0.05
PTCD3-215ENST00000484203 NISCHQ9Y2I1 1504 aa14.94□□□□□ -0.02
PTCD3-215ENST00000484203 POTEDQ86YR6 584 aa14.78□□□□□ -0.04
PTCD3-215ENST00000484203 SCAF1Q9H7N4 1312 aaKnown RBP14.19□□□□□ -0.14
PTCD3-215ENST00000484203 PPP4R3CPQ6ZMV5 832 aa14.12□□□□□ -0.15
PTCD3-215ENST00000484203 MAPK8IP2Q13387 824 aaPredicted RBP14.05□□□□□ -0.16
PTCD3-215ENST00000484203 DMRT2Q9Y5R5 561 aa14.01□□□□□ -0.17
PTCD3-215ENST00000484203 KCNA4P22459 653 aa13.78□□□□□ -0.2
PTCD3-215ENST00000484203 NCBP3Q53F19 620 aaKnown RBP13.75□□□□□ -0.21
PTCD3-215ENST00000484203 CNKSR2Q8WXI2 1034 aa13.71□□□□□ -0.21
PTCD3-215ENST00000484203 HOXD11P31277 338 aaPredicted RBP13.54□□□□□ -0.24
PTCD3-215ENST00000484203 NPM3O75607 178 aaKnown RBP13.53□□□□□ -0.24
PTCD3-215ENST00000484203 RNF216Q9NWF9 866 aaPredicted RBP13.49□□□□□ -0.25
PTCD3-215ENST00000484203 DCAF8L1A6NGE4 600 aa13.44□□□□□ -0.26
PTCD3-215ENST00000484203 CCDC180Q9P1Z9 1646 aa13.28□□□□□ -0.28
PTCD3-215ENST00000484203 ABCC9O60706 1549 aa13.18□□□□□ -0.3
PTCD3-215ENST00000484203 CACNB1Q02641 598 aaPredicted RBP13.14□□□□□ -0.31
PTCD3-215ENST00000484203 SLC4A1APQ9BWU0 796 aaKnown RBP13.14□□□□□ -0.31
PTCD3-215ENST00000484203 DNAJC5BQ9UF47 199 aa13.11□□□□□ -0.31
PTCD3-215ENST00000484203 RNF39Q9H2S5 420 aa13.1□□□□□ -0.31
PTCD3-215ENST00000484203 C1QBPQ07021 282 aaKnown RBP12.97□□□□□ -0.33
PTCD3-215ENST00000484203 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.93□□□□□ -0.344e-8■□□□□ 11
PTCD3-215ENST00000484203 EHMT2Q96KQ7 1210 aa12.81□□□□□ -0.36
PTCD3-215ENST00000484203 SLC4A2P04920 1241 aa12.76□□□□□ -0.37
PTCD3-215ENST00000484203 FOXD4L1Q9NU39 408 aa12.69□□□□□ -0.38
PTCD3-215ENST00000484203 ZBTB22O15209 634 aa12.66□□□□□ -0.38
PTCD3-215ENST00000484203 RB1CC1Q8TDY2 1594 aa12.65□□□□□ -0.38
PTCD3-215ENST00000484203 NACADO15069 1562 aa12.62□□□□□ -0.39
PTCD3-215ENST00000484203 DCAF8L2P0C7V8 631 aa12.62□□□□□ -0.39
PTCD3-215ENST00000484203 CSRNP3Q8WYN3 585 aa12.62□□□□□ -0.39
PTCD3-215ENST00000484203 U3KPZ7 1027 aaPredicted RBP12.61□□□□□ -0.39
PTCD3-215ENST00000484203 MYO15BQ96JP2 1530 aa12.56□□□□□ -0.4
PTCD3-215ENST00000484203 MYCNP04198 464 aaPredicted RBP12.51□□□□□ -0.41
PTCD3-215ENST00000484203 APLP2Q06481 763 aa12.42□□□□□ -0.42
PTCD3-215ENST00000484203 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.41□□□□□ -0.42
PTCD3-215ENST00000484203 CAPN15O75808 1086 aa12.41□□□□□ -0.42
PTCD3-215ENST00000484203 HNRNPUL2Q1KMD3 747 aaKnown RBP12.41□□□□□ -0.42
PTCD3-215ENST00000484203 DCAF1Q9Y4B6 1507 aa12.41□□□□□ -0.42
PTCD3-215ENST00000484203 ZCCHC6Q5VYS8 1495 aaKnown RBP12.4□□□□□ -0.42
PTCD3-215ENST00000484203 SPINK5Q9NQ38 1064 aaPredicted RBP12.38□□□□□ -0.43
PTCD3-215ENST00000484203 SAMD1Q6SPF0 538 aaPredicted RBP12.35□□□□□ -0.43
PTCD3-215ENST00000484203 PABPN1Q86U42 306 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTCD3-215ENST00000484203 DSG3P32926 999 aa12.29□□□□□ -0.44
PTCD3-215ENST00000484203 ZNF219Q9P2Y4 722 aaPredicted RBP12.26□□□□□ -0.45
PTCD3-215ENST00000484203 SHROOM4Q9ULL8 1493 aa12.24□□□□□ -0.45
PTCD3-215ENST00000484203 TRHP20396 242 aaPredicted RBP12.23□□□□□ -0.45
PTCD3-215ENST00000484203 ATXN8OSP0DMR3 200 aa12.22□□□□□ -0.45
PTCD3-215ENST00000484203 ATF5Q9Y2D1 282 aaPredicted RBP12.17□□□□□ -0.46
PTCD3-215ENST00000484203 BICRAQ9NZM4 1560 aa12.17□□□□□ -0.46
PTCD3-215ENST00000484203 ABCB7O75027 752 aa12.09□□□□□ -0.47
PTCD3-215ENST00000484203 UNC13AQ9UPW8 1703 aa12.08□□□□□ -0.48
PTCD3-215ENST00000484203 SCRIBQ14160 1630 aa12.07□□□□□ -0.48
PTCD3-215ENST00000484203 EIF4G1Q04637 1599 aaKnown RBP11.92□□□□□ -0.5
PTCD3-215ENST00000484203 CECR2Q9BXF3 1484 aa11.92□□□□□ -0.5
PTCD3-215ENST00000484203 POLA2Q14181 598 aa11.92□□□□□ -0.5
PTCD3-215ENST00000484203 CC2D2AQ9P2K1 1620 aa11.87□□□□□ -0.51
PTCD3-215ENST00000484203 RBM42Q9BTD8 480 aaKnown RBP11.82□□□□□ -0.52
PTCD3-215ENST00000484203 ZBTB12Q9Y330 459 aaPredicted RBP11.78□□□□□ -0.52
PTCD3-215ENST00000484203 FBLN2P98095 1184 aa11.69□□□□□ -0.54
PTCD3-215ENST00000484203 NCAPD3P42695 1498 aa11.69□□□□□ -0.54
PTCD3-215ENST00000484203 MKRN4PQ13434 485 aaPredicted RBP11.63□□□□□ -0.55
PTCD3-215ENST00000484203 POTEHQ6S545 545 aa11.63□□□□□ -0.55
PTCD3-215ENST00000484203 ATAD2BQ9ULI0 1458 aa11.63□□□□□ -0.55
PTCD3-215ENST00000484203 SMARCA2P51531 1590 aa11.62□□□□□ -0.55
PTCD3-215ENST00000484203 BAZ1AQ9NRL2 1556 aaPredicted RBP11.61□□□□□ -0.55
PTCD3-215ENST00000484203 HMGXB3Q12766 1538 aa11.56□□□□□ -0.56
PTCD3-215ENST00000484203 SMARCA4P51532 1647 aa11.56□□□□□ -0.56
PTCD3-215ENST00000484203 BAZ1BQ9UIG0 1483 aaKnown RBP11.53□□□□□ -0.56
PTCD3-215ENST00000484203 AKT1S1Q96B36 256 aa11.53□□□□□ -0.56
PTCD3-215ENST00000484203 OSCARQ8IYS5 282 aa11.51□□□□□ -0.57
PTCD3-215ENST00000484203 PEG3Q9GZU2 1588 aa11.5□□□□□ -0.57
PTCD3-215ENST00000484203 MROH2BQ7Z745 1585 aa11.46□□□□□ -0.57
PTCD3-215ENST00000484203 ERCC6Q03468 1493 aa11.46□□□□□ -0.57
PTCD3-215ENST00000484203 CHRDL2Q6WN34 429 aa11.46□□□□□ -0.57
PTCD3-215ENST00000484203 FKBP8Q14318 412 aa11.44□□□□□ -0.58
PTCD3-215ENST00000484203 CUX2O14529 1486 aa11.41□□□□□ -0.58
PTCD3-215ENST00000484203 SPDYE4A6NLX3 237 aa11.4□□□□□ -0.58
PTCD3-215ENST00000484203 REM2Q8IYK8 340 aaPredicted RBP11.39□□□□□ -0.59
PTCD3-215ENST00000484203 PDS5BQ9NTI5 1447 aa11.38□□□□□ -0.59
PTCD3-215ENST00000484203 SPDYE2BA6NHP3 402 aa11.38□□□□□ -0.59
PTCD3-215ENST00000484203 SPDYE6P0CI01 402 aa11.38□□□□□ -0.59
PTCD3-215ENST00000484203 SPDYE2Q495Y8 402 aa11.38□□□□□ -0.59
PTCD3-215ENST00000484203 ZNF692Q9BU19 519 aaPredicted RBP11.37□□□□□ -0.59
PTCD3-215ENST00000484203 CADPSQ9ULU8 1353 aa11.36□□□□□ -0.59
PTCD3-215ENST00000484203 RSF1Q96T23 1441 aaPredicted RBP11.35□□□□□ -0.59
PTCD3-215ENST00000484203 LAMC3Q9Y6N6 1575 aa11.34□□□□□ -0.59
PTCD3-215ENST00000484203 NESP48681 1621 aa11.32□□□□□ -0.6
PTCD3-215ENST00000484203 SSUH2Q9Y2M2 353 aa11.28□□□□□ -0.6
PTCD3-215ENST00000484203 DNAJC5Q9H3Z4 198 aa11.27□□□□□ -0.61
PTCD3-215ENST00000484203 WIZO95785 1651 aa11.24□□□□□ -0.61
PTCD3-215ENST00000484203 PITPNM1O00562 1244 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms