RNA–Protein interactions for RNA: ENST00000482843.5

RAPGEF3-210, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 3,395 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-210ENST00000482843 NISCHQ9Y2I1 1504 aa24.4■■□□□ 1.5
RAPGEF3-210ENST00000482843 SHROOM4Q9ULL8 1493 aa21.49■■□□□ 1.03
RAPGEF3-210ENST00000482843 DCAF8L2P0C7V8 631 aa21.45■■□□□ 1.02
RAPGEF3-210ENST00000482843 SUPT5HO00267 1087 aaKnown RBP21.11■□□□□ 0.97
RAPGEF3-210ENST00000482843 ZCCHC6Q5VYS8 1495 aaKnown RBP20.49■□□□□ 0.87
RAPGEF3-210ENST00000482843 CCDC180Q9P1Z9 1646 aa20.45■□□□□ 0.86
RAPGEF3-210ENST00000482843 CHIC1Q5VXU3 224 aa20■□□□□ 0.79
RAPGEF3-210ENST00000482843 ABCC9O60706 1549 aa19.91■□□□□ 0.78
RAPGEF3-210ENST00000482843 PELP1Q8IZL8 1130 aaKnown RBP19.78■□□□□ 0.76
RAPGEF3-210ENST00000482843 EHMT2Q96KQ7 1210 aa19.74■□□□□ 0.75
RAPGEF3-210ENST00000482843 SCRIBQ14160 1630 aa19.7■□□□□ 0.74
RAPGEF3-210ENST00000482843 DCAF1Q9Y4B6 1507 aa19.68■□□□□ 0.74
RAPGEF3-210ENST00000482843 LOC105371045A0A1W2PR82 267 aa19.67■□□□□ 0.74
RAPGEF3-210ENST00000482843 MYO15BQ96JP2 1530 aa19.65■□□□□ 0.74
RAPGEF3-210ENST00000482843 FAM9AQ8IZU1 332 aaPredicted RBP19.64■□□□□ 0.73
RAPGEF3-210ENST00000482843 MYT1Q01538 1121 aa19.61■□□□□ 0.73
RAPGEF3-210ENST00000482843 SLC24A1O60721 1099 aa19.57■□□□□ 0.72
RAPGEF3-210ENST00000482843 PCGF6Q9BYE7 350 aa19.56■□□□□ 0.72
RAPGEF3-210ENST00000482843 TRIM41Q8WV44 630 aa19.5■□□□□ 0.71
RAPGEF3-210ENST00000482843 RSF1Q96T23 1441 aaPredicted RBP19.39■□□□□ 0.69
RAPGEF3-210ENST00000482843 PRKCSHP14314 528 aaPredicted RBP19.31■□□□□ 0.68
RAPGEF3-210ENST00000482843 PABPN1Q86U42 306 aaKnown RBP eCLIP19.28■□□□□ 0.68
RAPGEF3-210ENST00000482843 CECR2Q9BXF3 1484 aa19.26■□□□□ 0.67
RAPGEF3-210ENST00000482843 NACADO15069 1562 aa19.19■□□□□ 0.66
RAPGEF3-210ENST00000482843 RB1CC1Q8TDY2 1594 aa19.1■□□□□ 0.65
RAPGEF3-210ENST00000482843 PPARGC1BQ86YN6 1023 aaKnown RBP19.09■□□□□ 0.65
RAPGEF3-210ENST00000482843 HRCP23327 699 aa19.09■□□□□ 0.65
RAPGEF3-210ENST00000482843 MROH2BQ7Z745 1585 aa19.06■□□□□ 0.64
RAPGEF3-210ENST00000482843 TTBK1Q5TCY1 1321 aaPredicted RBP19■□□□□ 0.63
RAPGEF3-210ENST00000482843 TRIM26Q12899 539 aaPredicted RBP18.95■□□□□ 0.62
RAPGEF3-210ENST00000482843 WIZO95785 1651 aa18.9■□□□□ 0.62
RAPGEF3-210ENST00000482843 RANGAP1P46060 587 aaPredicted RBP18.76■□□□□ 0.59
RAPGEF3-210ENST00000482843 BAZ1AQ9NRL2 1556 aaPredicted RBP18.76■□□□□ 0.59
RAPGEF3-210ENST00000482843 UBTFP17480 764 aaKnown RBP18.76■□□□□ 0.59
RAPGEF3-210ENST00000482843 ERICH6Q7L0X2 663 aa18.7■□□□□ 0.58
RAPGEF3-210ENST00000482843 CCDC88BA6NC98 1476 aa18.62■□□□□ 0.57
RAPGEF3-210ENST00000482843 ABCC8Q09428 1581 aa18.6■□□□□ 0.57
RAPGEF3-210ENST00000482843 SMARCA4P51532 1647 aa18.55■□□□□ 0.56
RAPGEF3-210ENST00000482843 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
RAPGEF3-210ENST00000482843 APLP2Q06481 763 aa18.5■□□□□ 0.55
RAPGEF3-210ENST00000482843 TOP2AP11388 1531 aaKnown RBP18.49■□□□□ 0.55
RAPGEF3-210ENST00000482843 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.49■□□□□ 0.55
RAPGEF3-210ENST00000482843 SOGA1O94964 1423 aa18.48■□□□□ 0.55
RAPGEF3-210ENST00000482843 CCER1Q8TC90 406 aaPredicted RBP18.48■□□□□ 0.55
RAPGEF3-210ENST00000482843 UNC13AQ9UPW8 1703 aa18.41■□□□□ 0.54
RAPGEF3-210ENST00000482843 ZEB1P37275 1124 aaPredicted RBP18.41■□□□□ 0.54
RAPGEF3-210ENST00000482843 SMARCA2P51531 1590 aa18.4■□□□□ 0.54
RAPGEF3-210ENST00000482843 BICRAQ9NZM4 1560 aa18.36■□□□□ 0.53
RAPGEF3-210ENST00000482843 RUSC2Q8N2Y8 1516 aa18.35■□□□□ 0.53
RAPGEF3-210ENST00000482843 BAZ1BQ9UIG0 1483 aaKnown RBP18.35■□□□□ 0.53
RAPGEF3-210ENST00000482843 WRNQ14191 1432 aaPredicted RBP eCLIP18.34■□□□□ 0.53
RAPGEF3-210ENST00000482843 BCL11AQ9H165 835 aa18.31■□□□□ 0.52
RAPGEF3-210ENST00000482843 CEP162Q5TB80 1403 aa18.28■□□□□ 0.52
RAPGEF3-210ENST00000482843 ATAD2BQ9ULI0 1458 aa18.27■□□□□ 0.52
RAPGEF3-210ENST00000482843 HNRNPUL2Q1KMD3 747 aaKnown RBP18.27■□□□□ 0.51
RAPGEF3-210ENST00000482843 DAXXQ9UER7 740 aaPredicted RBP18.22■□□□□ 0.51
RAPGEF3-210ENST00000482843 TNIKQ9UKE5 1360 aa18.16■□□□□ 0.5
RAPGEF3-210ENST00000482843 EIF4G1Q04637 1599 aaKnown RBP18.15■□□□□ 0.5
RAPGEF3-210ENST00000482843 GOLGA3Q08378 1498 aa18.11■□□□□ 0.49
RAPGEF3-210ENST00000482843 EEA1Q15075 1411 aa18.11■□□□□ 0.49
RAPGEF3-210ENST00000482843 ATP1B4Q9UN42 357 aaPredicted RBP18.07■□□□□ 0.48
RAPGEF3-210ENST00000482843 CLIP1P30622 1438 aa18.05■□□□□ 0.48
RAPGEF3-210ENST00000482843 SYNJ1O43426 1573 aa18.03■□□□□ 0.48
RAPGEF3-210ENST00000482843 ITGAEP38570 1179 aa18.01■□□□□ 0.47
RAPGEF3-210ENST00000482843 CEP164Q9UPV0 1460 aa18■□□□□ 0.47
RAPGEF3-210ENST00000482843 RAPGEF2Q9Y4G8 1499 aa17.97■□□□□ 0.47
RAPGEF3-210ENST00000482843 PEG3Q9GZU2 1588 aa17.94■□□□□ 0.46
RAPGEF3-210ENST00000482843 EIF5BO60841 1220 aaKnown RBP17.93■□□□□ 0.46
RAPGEF3-210ENST00000482843 P3H3Q8IVL6 736 aa17.92■□□□□ 0.46
RAPGEF3-210ENST00000482843 NCAPD3P42695 1498 aa17.86■□□□□ 0.45
RAPGEF3-210ENST00000482843 DIEXFQ68CQ4 756 aaKnown RBP17.86■□□□□ 0.45
RAPGEF3-210ENST00000482843 KIF27Q86VH2 1401 aa17.81■□□□□ 0.44
RAPGEF3-210ENST00000482843 VPS8Q8N3P4 1428 aa17.79■□□□□ 0.44
RAPGEF3-210ENST00000482843 KANK4Q5T7N3 995 aaPredicted RBP17.79■□□□□ 0.44
RAPGEF3-210ENST00000482843 PLEKHG5O94827 1062 aa17.78■□□□□ 0.44
RAPGEF3-210ENST00000482843 YTHDC1Q96MU7 727 aaKnown RBP17.78■□□□□ 0.44
RAPGEF3-210ENST00000482843 CUX2O14529 1486 aa17.74■□□□□ 0.43
RAPGEF3-210ENST00000482843 CADPSQ9ULU8 1353 aa17.72■□□□□ 0.43
RAPGEF3-210ENST00000482843 CUX1P39880 1505 aa17.71■□□□□ 0.43
RAPGEF3-210ENST00000482843 TOP2BQ02880 1626 aa17.71■□□□□ 0.43
RAPGEF3-210ENST00000482843 CFTRP13569 1480 aa17.69■□□□□ 0.42
RAPGEF3-210ENST00000482843 FAM50AQ14320 339 aaKnown RBP17.69■□□□□ 0.42
RAPGEF3-210ENST00000482843 HMGXB3Q12766 1538 aa17.68■□□□□ 0.42
RAPGEF3-210ENST00000482843 KIF21BO75037 1637 aa17.68■□□□□ 0.42
RAPGEF3-210ENST00000482843 ZNF316A6NFI3 1004 aaPredicted RBP17.67■□□□□ 0.42
RAPGEF3-210ENST00000482843 DNAJC5BQ9UF47 199 aa17.63■□□□□ 0.41
RAPGEF3-210ENST00000482843 CARMIL1Q5VZK9 1371 aa17.63■□□□□ 0.41
RAPGEF3-210ENST00000482843 PRXQ9BXM0 1461 aa17.6■□□□□ 0.41
RAPGEF3-210ENST00000482843 SCAF1Q9H7N4 1312 aaKnown RBP17.6■□□□□ 0.41
RAPGEF3-210ENST00000482843 IGF1RP08069 1367 aa17.6■□□□□ 0.41
RAPGEF3-210ENST00000482843 ARID3CA6NKF2 412 aa17.57■□□□□ 0.4
RAPGEF3-210ENST00000482843 CENPBP07199 599 aaPredicted RBP17.57■□□□□ 0.4
RAPGEF3-210ENST00000482843 ARAP1Q96P48 1450 aa17.57■□□□□ 0.4
RAPGEF3-210ENST00000482843 CC2D2AQ9P2K1 1620 aa17.57■□□□□ 0.4
RAPGEF3-210ENST00000482843 NESP48681 1621 aa17.56■□□□□ 0.4
RAPGEF3-210ENST00000482843 FGD5Q6ZNL6 1462 aa17.56■□□□□ 0.4
RAPGEF3-210ENST00000482843 FANCD2Q9BXW9 1451 aa17.55■□□□□ 0.4
RAPGEF3-210ENST00000482843 RAD54L2Q9Y4B4 1467 aa17.53■□□□□ 0.4
RAPGEF3-210ENST00000482843 NEUROD1Q13562 356 aa17.52■□□□□ 0.4
RAPGEF3-210ENST00000482843 TDRD9Q8NDG6 1382 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms