RNA–Protein interactions for RNA: ENST00000481804.5

CCDC78-211, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 3,248 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-211ENST00000481804 NISCHQ9Y2I1 1504 aa28.06■■■□□ 2.08
CCDC78-211ENST00000481804 SHROOM4Q9ULL8 1493 aa24.7■■□□□ 1.55
CCDC78-211ENST00000481804 SUPT5HO00267 1087 aaKnown RBP24.49■■□□□ 1.51
CCDC78-211ENST00000481804 HRCP23327 699 aa23.83■■□□□ 1.4
CCDC78-211ENST00000481804 DCAF8L2P0C7V8 631 aa23.8■■□□□ 1.4
CCDC78-211ENST00000481804 CHIC1Q5VXU3 224 aa23.77■■□□□ 1.4
CCDC78-211ENST00000481804 ZCCHC6Q5VYS8 1495 aaKnown RBP23.77■■□□□ 1.4
CCDC78-211ENST00000481804 PCGF6Q9BYE7 350 aa23.7■■□□□ 1.38
CCDC78-211ENST00000481804 MYO15BQ96JP2 1530 aa23.68■■□□□ 1.38
CCDC78-211ENST00000481804 CCDC180Q9P1Z9 1646 aa23.58■■□□□ 1.37
CCDC78-211ENST00000481804 PPARGC1BQ86YN6 1023 aaKnown RBP23.39■■□□□ 1.33
CCDC78-211ENST00000481804 LOC105371045A0A1W2PR82 267 aa23.23■■□□□ 1.31
CCDC78-211ENST00000481804 DCAF1Q9Y4B6 1507 aa23.11■■□□□ 1.29
CCDC78-211ENST00000481804 TRIM26Q12899 539 aaPredicted RBP23■■□□□ 1.27
CCDC78-211ENST00000481804 ZEB1P37275 1124 aaPredicted RBP22.7■■□□□ 1.22
CCDC78-211ENST00000481804 FAM9AQ8IZU1 332 aaPredicted RBP22.69■■□□□ 1.22
CCDC78-211ENST00000481804 TRIM41Q8WV44 630 aa22.69■■□□□ 1.22
CCDC78-211ENST00000481804 EHMT2Q96KQ7 1210 aa22.63■■□□□ 1.21
CCDC78-211ENST00000481804 ABCC9O60706 1549 aa22.52■■□□□ 1.2
CCDC78-211ENST00000481804 SCRIBQ14160 1630 aa22.47■■□□□ 1.19
CCDC78-211ENST00000481804 RSF1Q96T23 1441 aaPredicted RBP22.44■■□□□ 1.18
CCDC78-211ENST00000481804 PELP1Q8IZL8 1130 aaKnown RBP22.36■■□□□ 1.17
CCDC78-211ENST00000481804 RB1CC1Q8TDY2 1594 aa22.28■■□□□ 1.16
CCDC78-211ENST00000481804 SCAF1Q9H7N4 1312 aaKnown RBP22.26■■□□□ 1.15
CCDC78-211ENST00000481804 CCER1Q8TC90 406 aaPredicted RBP22.14■■□□□ 1.14
CCDC78-211ENST00000481804 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.12■■□□□ 1.13
CCDC78-211ENST00000481804 TTBK1Q5TCY1 1321 aaPredicted RBP22■■□□□ 1.11
CCDC78-211ENST00000481804 CECR2Q9BXF3 1484 aa21.99■■□□□ 1.11
CCDC78-211ENST00000481804 NACADO15069 1562 aa21.93■■□□□ 1.1
CCDC78-211ENST00000481804 ACIN1Q9UKV3 1341 aaKnown RBP21.92■■□□□ 1.1
CCDC78-211ENST00000481804 MROH2BQ7Z745 1585 aa21.89■■□□□ 1.09
CCDC78-211ENST00000481804 NEUROD1Q13562 356 aa21.87■■□□□ 1.09
CCDC78-211ENST00000481804 DIEXFQ68CQ4 756 aaKnown RBP21.87■■□□□ 1.09
CCDC78-211ENST00000481804 CENPBP07199 599 aaPredicted RBP21.86■■□□□ 1.09
CCDC78-211ENST00000481804 WIZO95785 1651 aa21.79■■□□□ 1.08
CCDC78-211ENST00000481804 GTF3C3Q9Y5Q9 886 aa21.77■■□□□ 1.08
CCDC78-211ENST00000481804 PABPN1Q86U42 306 aaKnown RBP eCLIP21.65■■□□□ 1.06
CCDC78-211ENST00000481804 UBTFP17480 764 aaKnown RBP21.64■■□□□ 1.05
CCDC78-211ENST00000481804 BAZ1AQ9NRL2 1556 aaPredicted RBP21.6■■□□□ 1.05
CCDC78-211ENST00000481804 CEP162Q5TB80 1403 aa21.6■■□□□ 1.05
CCDC78-211ENST00000481804 YTHDC1Q96MU7 727 aaKnown RBP21.57■■□□□ 1.04
CCDC78-211ENST00000481804 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
CCDC78-211ENST00000481804 CCDC88BA6NC98 1476 aa21.55■■□□□ 1.04
CCDC78-211ENST00000481804 ZNF316A6NFI3 1004 aaPredicted RBP21.53■■□□□ 1.04
CCDC78-211ENST00000481804 WRNQ14191 1432 aaPredicted RBP eCLIP21.52■■□□□ 1.04
CCDC78-211ENST00000481804 CSRNP3Q8WYN3 585 aa21.48■■□□□ 1.03
CCDC78-211ENST00000481804 SOGA1O94964 1423 aa21.48■■□□□ 1.03
CCDC78-211ENST00000481804 TNIKQ9UKE5 1360 aa21.46■■□□□ 1.03
CCDC78-211ENST00000481804 EIF4G1Q04637 1599 aaKnown RBP21.45■■□□□ 1.02
CCDC78-211ENST00000481804 HNRNPUL2Q1KMD3 747 aaKnown RBP21.44■■□□□ 1.02
CCDC78-211ENST00000481804 UNC13AQ9UPW8 1703 aa21.43■■□□□ 1.02
CCDC78-211ENST00000481804 TOP2AP11388 1531 aaKnown RBP21.39■■□□□ 1.01
CCDC78-211ENST00000481804 MYT1Q01538 1121 aa21.36■■□□□ 1.01
CCDC78-211ENST00000481804 EEA1Q15075 1411 aa21.33■■□□□ 1.01
CCDC78-211ENST00000481804 RUSC2Q8N2Y8 1516 aa21.32■■□□□ 1
CCDC78-211ENST00000481804 APLP2Q06481 763 aa21.31■■□□□ 1
CCDC78-211ENST00000481804 MIER1Q8N108 512 aa21.3■■□□□ 1
CCDC78-211ENST00000481804 SMARCA2P51531 1590 aa21.29■■□□□ 1
CCDC78-211ENST00000481804 GOLGA3Q08378 1498 aa21.29■■□□□ 1
CCDC78-211ENST00000481804 SMARCA4P51532 1647 aa21.28■■□□□ 1
CCDC78-211ENST00000481804 RANGAP1P46060 587 aaPredicted RBP21.27■■□□□ 1
CCDC78-211ENST00000481804 BICRAQ9NZM4 1560 aa21.18■□□□□ 0.98
CCDC78-211ENST00000481804 CLIP1P30622 1438 aa21.14■□□□□ 0.97
CCDC78-211ENST00000481804 CEP164Q9UPV0 1460 aa21.1■□□□□ 0.97
CCDC78-211ENST00000481804 VPS8Q8N3P4 1428 aa21.02■□□□□ 0.96
CCDC78-211ENST00000481804 KIF21BO75037 1637 aa20.93■□□□□ 0.94
CCDC78-211ENST00000481804 SYNJ1O43426 1573 aa20.91■□□□□ 0.94
CCDC78-211ENST00000481804 RAPGEF2Q9Y4G8 1499 aa20.91■□□□□ 0.94
CCDC78-211ENST00000481804 BAZ1BQ9UIG0 1483 aaKnown RBP20.85■□□□□ 0.93
CCDC78-211ENST00000481804 ATAD2BQ9ULI0 1458 aa20.84■□□□□ 0.93
CCDC78-211ENST00000481804 CLSPNQ9HAW4 1339 aa20.81■□□□□ 0.92
CCDC78-211ENST00000481804 DHX57Q6P158 1386 aaKnown RBP20.79■□□□□ 0.92
CCDC78-211ENST00000481804 ITGAEP38570 1179 aa20.78■□□□□ 0.92
CCDC78-211ENST00000481804 SUPT16HQ9Y5B9 1047 aaKnown RBP20.78■□□□□ 0.92
CCDC78-211ENST00000481804 KANK4Q5T7N3 995 aaPredicted RBP20.73■□□□□ 0.91
CCDC78-211ENST00000481804 PEG3Q9GZU2 1588 aa20.71■□□□□ 0.91
CCDC78-211ENST00000481804 ARAP1Q96P48 1450 aa20.59■□□□□ 0.89
CCDC78-211ENST00000481804 CCNB3Q8WWL7 1395 aa20.57■□□□□ 0.88
CCDC78-211ENST00000481804 TOP2BQ02880 1626 aa20.56■□□□□ 0.88
CCDC78-211ENST00000481804 BCANQ96GW7 911 aa20.56■□□□□ 0.88
CCDC78-211ENST00000481804 TSHZ2Q9NRE2 1034 aa20.54■□□□□ 0.88
CCDC78-211ENST00000481804 PRXQ9BXM0 1461 aa20.53■□□□□ 0.88
CCDC78-211ENST00000481804 KCNH8Q96L42 1107 aa20.53■□□□□ 0.88
CCDC78-211ENST00000481804 ERICH3Q5RHP9 1530 aa20.53■□□□□ 0.88
CCDC78-211ENST00000481804 RRBP1Q9P2E9 1410 aaKnown RBP20.52■□□□□ 0.87
CCDC78-211ENST00000481804 KIF27Q86VH2 1401 aa20.48■□□□□ 0.87
CCDC78-211ENST00000481804 DDX10Q13206 875 aaKnown RBP20.47■□□□□ 0.87
CCDC78-211ENST00000481804 RAB3GAP2Q9H2M9 1393 aa20.45■□□□□ 0.86
CCDC78-211ENST00000481804 FKBP8Q14318 412 aa20.44■□□□□ 0.86
CCDC78-211ENST00000481804 FAM50AQ14320 339 aaKnown RBP20.43■□□□□ 0.86
CCDC78-211ENST00000481804 NEFLP07196 543 aa20.42■□□□□ 0.86
CCDC78-211ENST00000481804 ATP1B4Q9UN42 357 aaPredicted RBP20.42■□□□□ 0.86
CCDC78-211ENST00000481804 BIVM-ERCC5R4GMW8 1640 aa20.4■□□□□ 0.86
CCDC78-211ENST00000481804 ANP32EQ9BTT0 268 aa20.4■□□□□ 0.86
CCDC78-211ENST00000481804 SIN3AQ96ST3 1273 aa20.38■□□□□ 0.85
CCDC78-211ENST00000481804 CUX2O14529 1486 aa20.37■□□□□ 0.85
CCDC78-211ENST00000481804 ARHGAP35Q9NRY4 1499 aa20.37■□□□□ 0.85
CCDC78-211ENST00000481804 NCAPD3P42695 1498 aa20.37■□□□□ 0.85
CCDC78-211ENST00000481804 HIRIP3Q9BW71 556 aaPredicted RBP20.34■□□□□ 0.85
CCDC78-211ENST00000481804 CUX1P39880 1505 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms