RNA–Protein interactions for RNA: ENST00000481788.1

RBM28-205, Transcript of RNA binding motif protein 28, humanhuman

TSL 3

Gene RBM28, Length 1,052 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM28-205ENST00000481788 AEBP2Q6ZN18 517 aaPredicted RBP24.28■■□□□ 1.48
RBM28-205ENST00000481788 CHIC1Q5VXU3 224 aa23.57■■□□□ 1.36
RBM28-205ENST00000481788 SENP3Q9H4L4 574 aaPredicted RBP20.79■□□□□ 0.92
RBM28-205ENST00000481788 PHF23Q9BUL5 403 aaPredicted RBP20.62■□□□□ 0.89
RBM28-205ENST00000481788 FOXD1Q16676 465 aa19.22■□□□□ 0.67
RBM28-205ENST00000481788 PLPPR3Q6T4P5 718 aa19.09■□□□□ 0.65
RBM28-205ENST00000481788 ADRA2BP18089 450 aa18.27■□□□□ 0.52
RBM28-205ENST00000481788 PPP6R1Q9UPN7 881 aa18.26■□□□□ 0.51
RBM28-205ENST00000481788 PIAS4Q8N2W9 510 aaPredicted RBP18.15■□□□□ 0.5
RBM28-205ENST00000481788 MSH5O43196 834 aa17.94■□□□□ 0.46
RBM28-205ENST00000481788 NISCHQ9Y2I1 1504 aa17.44■□□□□ 0.38
RBM28-205ENST00000481788 SCAF1Q9H7N4 1312 aaKnown RBP16.88■□□□□ 0.29
RBM28-205ENST00000481788 PPP4R3CPQ6ZMV5 832 aa16.74■□□□□ 0.27
RBM28-205ENST00000481788 POTEDQ86YR6 584 aa16.66■□□□□ 0.26
RBM28-205ENST00000481788 MAPK8IP2Q13387 824 aaPredicted RBP16.61■□□□□ 0.25
RBM28-205ENST00000481788 DMRT2Q9Y5R5 561 aa16.52■□□□□ 0.24
RBM28-205ENST00000481788 CNKSR2Q8WXI2 1034 aa16.37■□□□□ 0.21
RBM28-205ENST00000481788 NCBP3Q53F19 620 aaKnown RBP16.34■□□□□ 0.21
RBM28-205ENST00000481788 ABCC9O60706 1549 aa16.13■□□□□ 0.17
RBM28-205ENST00000481788 RNF216Q9NWF9 866 aaPredicted RBP16.1■□□□□ 0.17
RBM28-205ENST00000481788 HOXD11P31277 338 aaPredicted RBP16.07■□□□□ 0.16
RBM28-205ENST00000481788 KCNA4P22459 653 aa16.04■□□□□ 0.16
RBM28-205ENST00000481788 NPM3O75607 178 aaKnown RBP15.98■□□□□ 0.15
RBM28-205ENST00000481788 DCAF8L1A6NGE4 600 aa15.86■□□□□ 0.13
RBM28-205ENST00000481788 CCDC180Q9P1Z9 1646 aa15.73■□□□□ 0.11
RBM28-205ENST00000481788 DNAJC5BQ9UF47 199 aa15.6■□□□□ 0.09
RBM28-205ENST00000481788 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.37■□□□□ 0.053e-6■■■□□ 18.2
RBM28-205ENST00000481788 SLC4A1APQ9BWU0 796 aaKnown RBP15.31■□□□□ 0.04
RBM28-205ENST00000481788 RNF39Q9H2S5 420 aa15.28■□□□□ 0.04
RBM28-205ENST00000481788 RB1CC1Q8TDY2 1594 aa15.15■□□□□ 0.02
RBM28-205ENST00000481788 C1QBPQ07021 282 aaKnown RBP15.14■□□□□ 0.01
RBM28-205ENST00000481788 SLC4A2P04920 1241 aa15.11■□□□□ 0.01
RBM28-205ENST00000481788 CACNB1Q02641 598 aaPredicted RBP15.1■□□□□ 0.01
RBM28-205ENST00000481788 U3KPZ7 1027 aaPredicted RBP15.02■□□□□ -0
RBM28-205ENST00000481788 NACADO15069 1562 aa15□□□□□ -0.01
RBM28-205ENST00000481788 PABPN1Q86U42 306 aaKnown RBP eCLIP14.98□□□□□ -0.01
RBM28-205ENST00000481788 FOXD4L1Q9NU39 408 aa14.91□□□□□ -0.02
RBM28-205ENST00000481788 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.9□□□□□ -0.02
RBM28-205ENST00000481788 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
RBM28-205ENST00000481788 MYCNP04198 464 aaPredicted RBP14.85□□□□□ -0.03
RBM28-205ENST00000481788 APLP2Q06481 763 aa14.84□□□□□ -0.03
RBM28-205ENST00000481788 BICRAQ9NZM4 1560 aa14.84□□□□□ -0.03
RBM28-205ENST00000481788 SAMD1Q6SPF0 538 aaPredicted RBP14.8□□□□□ -0.04
RBM28-205ENST00000481788 UNC13AQ9UPW8 1703 aa14.78□□□□□ -0.04
RBM28-205ENST00000481788 MYO15BQ96JP2 1530 aa14.76□□□□□ -0.05
RBM28-205ENST00000481788 DCAF8L2P0C7V8 631 aa14.72□□□□□ -0.05
RBM28-205ENST00000481788 ZBTB22O15209 634 aa14.7□□□□□ -0.06
RBM28-205ENST00000481788 CAPN15O75808 1086 aa14.69□□□□□ -0.06
RBM28-205ENST00000481788 SPINK5Q9NQ38 1064 aaPredicted RBP14.65□□□□□ -0.06
RBM28-205ENST00000481788 ZNF219Q9P2Y4 722 aaPredicted RBP14.6□□□□□ -0.07
RBM28-205ENST00000481788 CECR2Q9BXF3 1484 aa14.58□□□□□ -0.08
RBM28-205ENST00000481788 SHROOM4Q9ULL8 1493 aa14.57□□□□□ -0.08
RBM28-205ENST00000481788 EHMT2Q96KQ7 1210 aa14.56□□□□□ -0.08
RBM28-205ENST00000481788 CC2D2AQ9P2K1 1620 aa14.55□□□□□ -0.08
RBM28-205ENST00000481788 TRHP20396 242 aaPredicted RBP14.54□□□□□ -0.08
RBM28-205ENST00000481788 DNAJC5Q9H3Z4 198 aa14.53□□□□□ -0.08
RBM28-205ENST00000481788 CSRNP3Q8WYN3 585 aa14.46□□□□□ -0.09
RBM28-205ENST00000481788 ATXN8OSP0DMR3 200 aa14.45□□□□□ -0.1
RBM28-205ENST00000481788 DSG3P32926 999 aa14.45□□□□□ -0.1
RBM28-205ENST00000481788 EIF4G1Q04637 1599 aaKnown RBP14.45□□□□□ -0.1
RBM28-205ENST00000481788 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
RBM28-205ENST00000481788 ZCCHC6Q5VYS8 1495 aaKnown RBP14.4□□□□□ -0.1
RBM28-205ENST00000481788 ABCB7O75027 752 aa14.33□□□□□ -0.12
RBM28-205ENST00000481788 ATF5Q9Y2D1 282 aaPredicted RBP14.33□□□□□ -0.12
RBM28-205ENST00000481788 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
RBM28-205ENST00000481788 POLA2Q14181 598 aa14.24□□□□□ -0.13
RBM28-205ENST00000481788 ZBTB12Q9Y330 459 aaPredicted RBP14.11□□□□□ -0.15
RBM28-205ENST00000481788 CUX2O14529 1486 aa14.06□□□□□ -0.16
RBM28-205ENST00000481788 NCAPD3P42695 1498 aa13.93□□□□□ -0.18
RBM28-205ENST00000481788 FBLN2P98095 1184 aa13.92□□□□□ -0.18
RBM28-205ENST00000481788 RBM42Q9BTD8 480 aaKnown RBP13.89□□□□□ -0.19
RBM28-205ENST00000481788 ERCC6Q03468 1493 aa13.88□□□□□ -0.19
RBM28-205ENST00000481788 ATAD2BQ9ULI0 1458 aa13.81□□□□□ -0.2
RBM28-205ENST00000481788 NESP48681 1621 aa13.79□□□□□ -0.2
RBM28-205ENST00000481788 OSCARQ8IYS5 282 aa13.76□□□□□ -0.21
RBM28-205ENST00000481788 HMGXB3Q12766 1538 aa13.74□□□□□ -0.21
RBM28-205ENST00000481788 MKRN4PQ13434 485 aaPredicted RBP13.71□□□□□ -0.21
RBM28-205ENST00000481788 THOC2Q8NI27 1593 aaKnown RBP13.71□□□□□ -0.22
RBM28-205ENST00000481788 SMARCA2P51531 1590 aa13.67□□□□□ -0.22
RBM28-205ENST00000481788 SPDYE2BA6NHP3 402 aa13.65□□□□□ -0.22
RBM28-205ENST00000481788 SPDYE6P0CI01 402 aa13.65□□□□□ -0.22
RBM28-205ENST00000481788 SPDYE2Q495Y8 402 aa13.65□□□□□ -0.22
RBM28-205ENST00000481788 SMARCA4P51532 1647 aa13.64□□□□□ -0.23
RBM28-205ENST00000481788 AKT1S1Q96B36 256 aa13.62□□□□□ -0.23
RBM28-205ENST00000481788 TRIM41Q8WV44 630 aa13.61□□□□□ -0.23
RBM28-205ENST00000481788 BAZ1BQ9UIG0 1483 aaKnown RBP13.59□□□□□ -0.23
RBM28-205ENST00000481788 PEG3Q9GZU2 1588 aa13.58□□□□□ -0.23
RBM28-205ENST00000481788 LAMC3Q9Y6N6 1575 aa13.58□□□□□ -0.24
RBM28-205ENST00000481788 ZNF692Q9BU19 519 aaPredicted RBP13.53□□□□□ -0.24
RBM28-205ENST00000481788 PDS5BQ9NTI5 1447 aa13.52□□□□□ -0.25
RBM28-205ENST00000481788 BAZ1AQ9NRL2 1556 aaPredicted RBP13.51□□□□□ -0.25
RBM28-205ENST00000481788 KIF21AQ7Z4S6 1674 aa13.5□□□□□ -0.25
RBM28-205ENST00000481788 SSUH2Q9Y2M2 353 aa13.46□□□□□ -0.25
RBM28-205ENST00000481788 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
RBM28-205ENST00000481788 WDR62O43379 1518 aa13.45□□□□□ -0.26
RBM28-205ENST00000481788 MROH2BQ7Z745 1585 aa13.45□□□□□ -0.26
RBM28-205ENST00000481788 MRC2Q9UBG0 1479 aa13.44□□□□□ -0.26
RBM28-205ENST00000481788 REM2Q8IYK8 340 aaPredicted RBP13.44□□□□□ -0.26
RBM28-205ENST00000481788 SPDYE4A6NLX3 237 aa13.38□□□□□ -0.27
RBM28-205ENST00000481788 CHRDL2Q6WN34 429 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms