RNA–Protein interactions for RNA: ENST00000481708.1

SMC6-208, Transcript of structural maintenance of chromosomes 6, humanhuman

TSL 2

Gene SMC6, Length 3,897 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-208ENST00000481708 AEBP2Q6ZN18 517 aaPredicted RBP10.92□□□□□ -0.66
SMC6-208ENST00000481708 CHIC1Q5VXU3 224 aa10.85□□□□□ -0.67
SMC6-208ENST00000481708 PHF23Q9BUL5 403 aaPredicted RBP9.65□□□□□ -0.86
SMC6-208ENST00000481708 SENP3Q9H4L4 574 aaPredicted RBP9.09□□□□□ -0.95
SMC6-208ENST00000481708 PLPPR3Q6T4P5 718 aa8.89□□□□□ -0.99
SMC6-208ENST00000481708 FOXD1Q16676 465 aa8.48□□□□□ -1.05
SMC6-208ENST00000481708 ADRA2BP18089 450 aa8.45□□□□□ -1.06
SMC6-208ENST00000481708 PPP6R1Q9UPN7 881 aa8.44□□□□□ -1.06
SMC6-208ENST00000481708 NISCHQ9Y2I1 1504 aa8.38□□□□□ -1.07
SMC6-208ENST00000481708 CCDC180Q9P1Z9 1646 aa8.27□□□□□ -1.09
SMC6-208ENST00000481708 KCNA4P22459 653 aa8.1□□□□□ -1.11
SMC6-208ENST00000481708 EHMT2Q96KQ7 1210 aa8.08□□□□□ -1.12
SMC6-208ENST00000481708 PIAS4Q8N2W9 510 aaPredicted RBP8.03□□□□□ -1.12
SMC6-208ENST00000481708 PPP4R3CPQ6ZMV5 832 aa7.9□□□□□ -1.14
SMC6-208ENST00000481708 SLC24A1O60721 1099 aa7.89□□□□□ -1.15
SMC6-208ENST00000481708 MYO15BQ96JP2 1530 aa7.79□□□□□ -1.16
SMC6-208ENST00000481708 UNC13AQ9UPW8 1703 aa7.74□□□□□ -1.17
SMC6-208ENST00000481708 CSRNP3Q8WYN3 585 aa7.74□□□□□ -1.17
SMC6-208ENST00000481708 NPM3O75607 178 aaKnown RBP7.7□□□□□ -1.18
SMC6-208ENST00000481708 SLC4A1APQ9BWU0 796 aaKnown RBP7.7□□□□□ -1.18
SMC6-208ENST00000481708 NCBP3Q53F19 620 aaKnown RBP7.69□□□□□ -1.18
SMC6-208ENST00000481708 SHROOM4Q9ULL8 1493 aa7.68□□□□□ -1.18
SMC6-208ENST00000481708 MSH5O43196 834 aa7.61□□□□□ -1.19
SMC6-208ENST00000481708 CNKSR2Q8WXI2 1034 aa7.59□□□□□ -1.19
SMC6-208ENST00000481708 RTN4Q9NQC3 1192 aaKnown RBP7.59□□□□□ -1.19
SMC6-208ENST00000481708 MAPK8IP2Q13387 824 aaPredicted RBP7.57□□□□□ -1.2
SMC6-208ENST00000481708 SCAF1Q9H7N4 1312 aaKnown RBP7.54□□□□□ -1.2
SMC6-208ENST00000481708 DCAF1Q9Y4B6 1507 aa7.52□□□□□ -1.21
SMC6-208ENST00000481708 ZBTB22O15209 634 aa7.52□□□□□ -1.21
SMC6-208ENST00000481708 NACADO15069 1562 aa7.45□□□□□ -1.22
SMC6-208ENST00000481708 BICRAQ9NZM4 1560 aa7.45□□□□□ -1.22
SMC6-208ENST00000481708 DNAJC5BQ9UF47 199 aa7.39□□□□□ -1.23
SMC6-208ENST00000481708 RNF216Q9NWF9 866 aaPredicted RBP7.38□□□□□ -1.23
SMC6-208ENST00000481708 RB1CC1Q8TDY2 1594 aa7.35□□□□□ -1.23
SMC6-208ENST00000481708 DMRT2Q9Y5R5 561 aa7.33□□□□□ -1.24
SMC6-208ENST00000481708 FOXD4L1Q9NU39 408 aa7.3□□□□□ -1.24
SMC6-208ENST00000481708 HOXD11P31277 338 aaPredicted RBP7.3□□□□□ -1.24
SMC6-208ENST00000481708 AMER1Q5JTC6 1135 aaPredicted RBP7.25□□□□□ -1.25
SMC6-208ENST00000481708 SLC4A2P04920 1241 aa7.23□□□□□ -1.25
SMC6-208ENST00000481708 PEG3Q9GZU2 1588 aa7.11□□□□□ -1.27
SMC6-208ENST00000481708 ZCCHC6Q5VYS8 1495 aaKnown RBP7.08□□□□□ -1.28
SMC6-208ENST00000481708 PRKCSHP14314 528 aaPredicted RBP7.08□□□□□ -1.28
SMC6-208ENST00000481708 MYCNP04198 464 aaPredicted RBP7.04□□□□□ -1.28
SMC6-208ENST00000481708 PRDM2Q13029 1718 aa7.03□□□□□ -1.28
SMC6-208ENST00000481708 ABCC9O60706 1549 aa7□□□□□ -1.29
SMC6-208ENST00000481708 ATXN8OSP0DMR3 200 aa6.99□□□□□ -1.29
SMC6-208ENST00000481708 CC2D2AQ9P2K1 1620 aa6.97□□□□□ -1.29
SMC6-208ENST00000481708 DCAF8L1A6NGE4 600 aa6.97□□□□□ -1.29
SMC6-208ENST00000481708 EIF4G1Q04637 1599 aaKnown RBP6.96□□□□□ -1.29
SMC6-208ENST00000481708 ATF5Q9Y2D1 282 aaPredicted RBP6.96□□□□□ -1.3
SMC6-208ENST00000481708 THOC2Q8NI27 1593 aaKnown RBP6.94□□□□□ -1.3
SMC6-208ENST00000481708 SMARCA2P51531 1590 aa6.93□□□□□ -1.3
SMC6-208ENST00000481708 HMGXB3Q12766 1538 aa6.92□□□□□ -1.3
SMC6-208ENST00000481708 POTEDQ86YR6 584 aa6.91□□□□□ -1.3
SMC6-208ENST00000481708 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.91□□□□□ -1.39e-6■□□□□ 10.7
SMC6-208ENST00000481708 U3KPZ7 1027 aaPredicted RBP6.91□□□□□ -1.3
SMC6-208ENST00000481708 CUX2O14529 1486 aa6.86□□□□□ -1.31
SMC6-208ENST00000481708 FKBP8Q14318 412 aa6.85□□□□□ -1.31
SMC6-208ENST00000481708 SAMD1Q6SPF0 538 aaPredicted RBP6.8□□□□□ -1.32
SMC6-208ENST00000481708 TAOK2Q9UL54 1235 aa6.8□□□□□ -1.32
SMC6-208ENST00000481708 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.78□□□□□ -1.32
SMC6-208ENST00000481708 PLCB2Q00722 1185 aa6.78□□□□□ -1.32
SMC6-208ENST00000481708 HNRNPUL2Q1KMD3 747 aaKnown RBP6.78□□□□□ -1.32
SMC6-208ENST00000481708 TIMELESSQ9UNS1 1208 aa6.78□□□□□ -1.32
SMC6-208ENST00000481708 WDR97A6NE52 1622 aa6.76□□□□□ -1.33
SMC6-208ENST00000481708 NCAPD3P42695 1498 aa6.73□□□□□ -1.33
SMC6-208ENST00000481708 ZNF219Q9P2Y4 722 aaPredicted RBP6.72□□□□□ -1.33
SMC6-208ENST00000481708 LAMC3Q9Y6N6 1575 aa6.71□□□□□ -1.33
SMC6-208ENST00000481708 DAXXQ9UER7 740 aaPredicted RBP6.71□□□□□ -1.34
SMC6-208ENST00000481708 SCRIBQ14160 1630 aa6.7□□□□□ -1.34
SMC6-208ENST00000481708 WDR62O43379 1518 aa6.7□□□□□ -1.34
SMC6-208ENST00000481708 SMARCA4P51532 1647 aa6.69□□□□□ -1.34
SMC6-208ENST00000481708 TPRNQ4KMQ1 711 aa6.67□□□□□ -1.34
SMC6-208ENST00000481708 KIF21AQ7Z4S6 1674 aa6.66□□□□□ -1.34
SMC6-208ENST00000481708 MKRN4PQ13434 485 aaPredicted RBP6.65□□□□□ -1.35
SMC6-208ENST00000481708 SPINK5Q9NQ38 1064 aaPredicted RBP6.65□□□□□ -1.35
SMC6-208ENST00000481708 KDM2AQ9Y2K7 1162 aa6.64□□□□□ -1.35
SMC6-208ENST00000481708 BCANQ96GW7 911 aa6.63□□□□□ -1.35
SMC6-208ENST00000481708 RNF39Q9H2S5 420 aa6.62□□□□□ -1.35
SMC6-208ENST00000481708 HAP1P54257 671 aaPredicted RBP6.61□□□□□ -1.35
SMC6-208ENST00000481708 TULP1O00294 542 aaPredicted RBP6.6□□□□□ -1.35
SMC6-208ENST00000481708 FBLN2P98095 1184 aa6.59□□□□□ -1.35
SMC6-208ENST00000481708 APLP2Q06481 763 aa6.59□□□□□ -1.35
SMC6-208ENST00000481708 TRHP20396 242 aaPredicted RBP6.58□□□□□ -1.36
SMC6-208ENST00000481708 CECR2Q9BXF3 1484 aa6.58□□□□□ -1.36
SMC6-208ENST00000481708 SPDYE4A6NLX3 237 aa6.56□□□□□ -1.36
SMC6-208ENST00000481708 POLA2Q14181 598 aa6.56□□□□□ -1.36
SMC6-208ENST00000481708 PROM2Q8N271 834 aa6.54□□□□□ -1.36
SMC6-208ENST00000481708 CAPN15O75808 1086 aa6.52□□□□□ -1.36
SMC6-208ENST00000481708 BAZ1AQ9NRL2 1556 aaPredicted RBP6.5□□□□□ -1.37
SMC6-208ENST00000481708 ATAD2BQ9ULI0 1458 aa6.5□□□□□ -1.37
SMC6-208ENST00000481708 C1QBPQ07021 282 aaKnown RBP6.5□□□□□ -1.37
SMC6-208ENST00000481708 ARXQ96QS3 562 aa6.49□□□□□ -1.37
SMC6-208ENST00000481708 ABCB7O75027 752 aa6.48□□□□□ -1.37
SMC6-208ENST00000481708 TARBP1Q13395 1621 aaKnown RBP6.47□□□□□ -1.37
SMC6-208ENST00000481708 VSIG10Q8N0Z9 540 aa6.47□□□□□ -1.37
SMC6-208ENST00000481708 SHROOM2Q13796 1616 aa6.46□□□□□ -1.37
SMC6-208ENST00000481708 FBXO3Q9UK99 471 aa6.45□□□□□ -1.38
SMC6-208ENST00000481708 CLASP1Q7Z460 1538 aa6.43□□□□□ -1.38
SMC6-208ENST00000481708 PKD2Q13563 968 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms