RNA–Protein interactions for RNA: ENST00000479988.1

CPS1-207, Transcript of carbamoyl-phosphate synthase 1, humanhuman

TSL 1 (best)

Gene CPS1, Length 4,811 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-207ENST00000479988 NISCHQ9Y2I1 1504 aa11.69□□□□□ -0.54
CPS1-207ENST00000479988 DCAF8L2P0C7V8 631 aa11.3□□□□□ -0.6
CPS1-207ENST00000479988 ABCC9O60706 1549 aa10.32□□□□□ -0.76
CPS1-207ENST00000479988 SHROOM4Q9ULL8 1493 aa10.19□□□□□ -0.78
CPS1-207ENST00000479988 SUPT5HO00267 1087 aaKnown RBP10.05□□□□□ -0.8
CPS1-207ENST00000479988 PABPN1Q86U42 306 aaKnown RBP eCLIP9.98□□□□□ -0.81
CPS1-207ENST00000479988 CCDC180Q9P1Z9 1646 aa9.97□□□□□ -0.81
CPS1-207ENST00000479988 FAM9AQ8IZU1 332 aaPredicted RBP9.9□□□□□ -0.82
CPS1-207ENST00000479988 ZCCHC6Q5VYS8 1495 aaKnown RBP9.81□□□□□ -0.84
CPS1-207ENST00000479988 SLC24A1O60721 1099 aa9.75□□□□□ -0.85
CPS1-207ENST00000479988 RB1CC1Q8TDY2 1594 aa9.7□□□□□ -0.86
CPS1-207ENST00000479988 DCAF1Q9Y4B6 1507 aa9.64□□□□□ -0.87
CPS1-207ENST00000479988 NACADO15069 1562 aa9.56□□□□□ -0.88
CPS1-207ENST00000479988 SCRIBQ14160 1630 aa9.55□□□□□ -0.88
CPS1-207ENST00000479988 EHMT2Q96KQ7 1210 aa9.52□□□□□ -0.89
CPS1-207ENST00000479988 APLP2Q06481 763 aa9.5□□□□□ -0.89
CPS1-207ENST00000479988 TRIM41Q8WV44 630 aa9.44□□□□□ -0.9
CPS1-207ENST00000479988 MYO15BQ96JP2 1530 aa9.44□□□□□ -0.9
CPS1-207ENST00000479988 FBLN2P98095 1184 aa9.42□□□□□ -0.9
CPS1-207ENST00000479988 ATP1B4Q9UN42 357 aaPredicted RBP9.42□□□□□ -0.9
CPS1-207ENST00000479988 CHIC1Q5VXU3 224 aa9.41□□□□□ -0.9
CPS1-207ENST00000479988 RANGAP1P46060 587 aaPredicted RBP9.4□□□□□ -0.9
CPS1-207ENST00000479988 TTBK1Q5TCY1 1321 aaPredicted RBP9.38□□□□□ -0.91
CPS1-207ENST00000479988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.34□□□□□ -0.91
CPS1-207ENST00000479988 HNRNPUL2Q1KMD3 747 aaKnown RBP9.34□□□□□ -0.91
CPS1-207ENST00000479988 UBTFP17480 764 aaKnown RBP9.34□□□□□ -0.91
CPS1-207ENST00000479988 ERCC6Q03468 1493 aa9.32□□□□□ -0.92
CPS1-207ENST00000479988 MYT1LQ9UL68 1186 aa9.31□□□□□ -0.92
CPS1-207ENST00000479988 NPM1P06748 294 aaKnown RBP eCLIP9.21□□□□□ -0.93
CPS1-207ENST00000479988 RSF1Q96T23 1441 aaPredicted RBP9.2□□□□□ -0.94
CPS1-207ENST00000479988 CECR2Q9BXF3 1484 aa9.2□□□□□ -0.94
CPS1-207ENST00000479988 BAZ1BQ9UIG0 1483 aaKnown RBP9.19□□□□□ -0.94
CPS1-207ENST00000479988 CHMP7Q8WUX9 453 aaPredicted RBP9.14□□□□□ -0.95
CPS1-207ENST00000479988 PCGF6Q9BYE7 350 aa9.09□□□□□ -0.95
CPS1-207ENST00000479988 BAZ1AQ9NRL2 1556 aaPredicted RBP9.09□□□□□ -0.96
CPS1-207ENST00000479988 PDS5BQ9NTI5 1447 aa9.08□□□□□ -0.96
CPS1-207ENST00000479988 LOC105371045A0A1W2PR82 267 aa9.06□□□□□ -0.96
CPS1-207ENST00000479988 TRIM26Q12899 539 aaPredicted RBP9.05□□□□□ -0.96
CPS1-207ENST00000479988 SMARCA2P51531 1590 aa9.04□□□□□ -0.96
CPS1-207ENST00000479988 ZEB1P37275 1124 aaPredicted RBP9.04□□□□□ -0.96
CPS1-207ENST00000479988 TRHP20396 242 aaPredicted RBP9.03□□□□□ -0.96
CPS1-207ENST00000479988 MROH2BQ7Z745 1585 aa8.99□□□□□ -0.97
CPS1-207ENST00000479988 HRCP23327 699 aa8.98□□□□□ -0.97
CPS1-207ENST00000479988 ESF1Q9H501 851 aaKnown RBP8.98□□□□□ -0.97
CPS1-207ENST00000479988 CDK11AQ9UQ88 783 aaPredicted RBP8.97□□□□□ -0.97
CPS1-207ENST00000479988 DNAJC5BQ9UF47 199 aa8.92□□□□□ -0.98
CPS1-207ENST00000479988 ARID3CA6NKF2 412 aa8.91□□□□□ -0.98
CPS1-207ENST00000479988 CADPSQ9ULU8 1353 aa8.9□□□□□ -0.98
CPS1-207ENST00000479988 EEA1Q15075 1411 aa8.9□□□□□ -0.98
CPS1-207ENST00000479988 EIF4G1Q04637 1599 aaKnown RBP8.9□□□□□ -0.98
CPS1-207ENST00000479988 P3H3Q8IVL6 736 aa8.9□□□□□ -0.98
CPS1-207ENST00000479988 TOP2AP11388 1531 aaKnown RBP8.89□□□□□ -0.99
CPS1-207ENST00000479988 ATAD2BQ9ULI0 1458 aa8.89□□□□□ -0.99
CPS1-207ENST00000479988 OSCARQ8IYS5 282 aa8.88□□□□□ -0.99
CPS1-207ENST00000479988 CSRNP3Q8WYN3 585 aa8.88□□□□□ -0.99
CPS1-207ENST00000479988 SMARCA4P51532 1647 aa8.87□□□□□ -0.99
CPS1-207ENST00000479988 WIZO95785 1651 aa8.87□□□□□ -0.99
CPS1-207ENST00000479988 MYT1Q01538 1121 aa8.87□□□□□ -0.99
CPS1-207ENST00000479988 CEP164Q9UPV0 1460 aa8.86□□□□□ -0.99
CPS1-207ENST00000479988 PLPPR3Q6T4P5 718 aa8.84□□□□□ -0.99
CPS1-207ENST00000479988 ITGAEP38570 1179 aa8.83□□□□□ -1
CPS1-207ENST00000479988 CCDC88BA6NC98 1476 aa8.83□□□□□ -1
CPS1-207ENST00000479988 CC2D2AQ9P2K1 1620 aa8.83□□□□□ -1
CPS1-207ENST00000479988 DAXXQ9UER7 740 aaPredicted RBP8.82□□□□□ -1
CPS1-207ENST00000479988 WRNQ14191 1432 aaPredicted RBP eCLIP8.82□□□□□ -1
CPS1-207ENST00000479988 NCAPD3P42695 1498 aa8.81□□□□□ -1
CPS1-207ENST00000479988 ZNF777Q9ULD5 760 aaPredicted RBP8.8□□□□□ -1
CPS1-207ENST00000479988 KCNH8Q96L42 1107 aa8.79□□□□□ -1
CPS1-207ENST00000479988 BCANQ96GW7 911 aa8.79□□□□□ -1
CPS1-207ENST00000479988 KIF27Q86VH2 1401 aa8.79□□□□□ -1
CPS1-207ENST00000479988 ARID4BQ4LE39 1312 aaPredicted RBP8.78□□□□□ -1
CPS1-207ENST00000479988 SOGA1O94964 1423 aa8.77□□□□□ -1
CPS1-207ENST00000479988 CYB5RLQ6IPT4 315 aa8.77□□□□□ -1.01
CPS1-207ENST00000479988 AEBP2Q6ZN18 517 aaPredicted RBP8.77□□□□□ -1.01
CPS1-207ENST00000479988 CCER1Q8TC90 406 aaPredicted RBP8.77□□□□□ -1.01
CPS1-207ENST00000479988 FANCD2Q9BXW9 1451 aa8.76□□□□□ -1.01
CPS1-207ENST00000479988 FAM50AQ14320 339 aaKnown RBP8.76□□□□□ -1.01
CPS1-207ENST00000479988 ABCC8Q09428 1581 aa8.76□□□□□ -1.01
CPS1-207ENST00000479988 PLEKHD1A6NEE1 506 aa8.76□□□□□ -1.01
CPS1-207ENST00000479988 TDRD9Q8NDG6 1382 aaKnown RBP8.75□□□□□ -1.01
CPS1-207ENST00000479988 TNIKQ9UKE5 1360 aa8.75□□□□□ -1.01
CPS1-207ENST00000479988 STAG3Q9UJ98 1225 aa8.73□□□□□ -1.01
CPS1-207ENST00000479988 GOLGA3Q08378 1498 aa8.73□□□□□ -1.01
CPS1-207ENST00000479988 CUX2O14529 1486 aa8.72□□□□□ -1.01
CPS1-207ENST00000479988 RTN4Q9NQC3 1192 aaKnown RBP8.72□□□□□ -1.01
CPS1-207ENST00000479988 CARMIL2Q6F5E8 1435 aa8.71□□□□□ -1.01
CPS1-207ENST00000479988 PELP1Q8IZL8 1130 aaKnown RBP8.7□□□□□ -1.02
CPS1-207ENST00000479988 PPARGC1BQ86YN6 1023 aaKnown RBP8.7□□□□□ -1.02
CPS1-207ENST00000479988 BICRAQ9NZM4 1560 aa8.7□□□□□ -1.02
CPS1-207ENST00000479988 PEG3Q9GZU2 1588 aa8.69□□□□□ -1.02
CPS1-207ENST00000479988 TRIM52Q96A61 297 aa8.69□□□□□ -1.02
CPS1-207ENST00000479988 CEP162Q5TB80 1403 aa8.67□□□□□ -1.02
CPS1-207ENST00000479988 TSPY4P0CV99 314 aa8.66□□□□□ -1.02
CPS1-207ENST00000479988 TSPY10P0CW01 314 aa8.66□□□□□ -1.02
CPS1-207ENST00000479988 UNC13AQ9UPW8 1703 aa8.66□□□□□ -1.02
CPS1-207ENST00000479988 ERICH6Q7L0X2 663 aa8.66□□□□□ -1.02
CPS1-207ENST00000479988 MRC2Q9UBG0 1479 aa8.66□□□□□ -1.02
CPS1-207ENST00000479988 CARMIL1Q5VZK9 1371 aa8.65□□□□□ -1.02
CPS1-207ENST00000479988 HMGXB3Q12766 1538 aa8.64□□□□□ -1.03
CPS1-207ENST00000479988 CLIP1P30622 1438 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms