RNA–Protein interactions for RNA: ENST00000479107.1

HLA-DPA1-247, Transcript of major histocompatibility complex, class II, DP alpha 1, humanhuman

Gene HLA-DPA1, Length 5,025 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA1-247ENST00000479107 NISCHQ9Y2I1 1504 aa15.83■□□□□ 0.12
HLA-DPA1-247ENST00000479107 DCAF8L2P0C7V8 631 aa15.59■□□□□ 0.09
HLA-DPA1-247ENST00000479107 ABCC9O60706 1549 aa14.86□□□□□ -0.03
HLA-DPA1-247ENST00000479107 PABPN1Q86U42 306 aaKnown RBP eCLIP14.25□□□□□ -0.13
HLA-DPA1-247ENST00000479107 SUPT5HO00267 1087 aaKnown RBP13.89□□□□□ -0.19
HLA-DPA1-247ENST00000479107 RB1CC1Q8TDY2 1594 aa13.83□□□□□ -0.2
HLA-DPA1-247ENST00000479107 PELP1Q8IZL8 1130 aaKnown RBP13.8□□□□□ -0.2
HLA-DPA1-247ENST00000479107 CCDC180Q9P1Z9 1646 aa13.78□□□□□ -0.2
HLA-DPA1-247ENST00000479107 MYT1Q01538 1121 aa13.61□□□□□ -0.23
HLA-DPA1-247ENST00000479107 SHROOM4Q9ULL8 1493 aa13.57□□□□□ -0.24
HLA-DPA1-247ENST00000479107 PCGF6Q9BYE7 350 aa13.55□□□□□ -0.24
HLA-DPA1-247ENST00000479107 NACADO15069 1562 aa13.54□□□□□ -0.24
HLA-DPA1-247ENST00000479107 FAM9AQ8IZU1 332 aaPredicted RBP13.53□□□□□ -0.24
HLA-DPA1-247ENST00000479107 ZEB1P37275 1124 aaPredicted RBP13.43□□□□□ -0.26
HLA-DPA1-247ENST00000479107 ERCC6Q03468 1493 aa13.42□□□□□ -0.26
HLA-DPA1-247ENST00000479107 CENPBP07199 599 aaPredicted RBP13.39□□□□□ -0.27
HLA-DPA1-247ENST00000479107 DNAJC5BQ9UF47 199 aa13.38□□□□□ -0.27
HLA-DPA1-247ENST00000479107 TRIM41Q8WV44 630 aa13.36□□□□□ -0.27
HLA-DPA1-247ENST00000479107 SCRIBQ14160 1630 aa13.35□□□□□ -0.27
HLA-DPA1-247ENST00000479107 CECR2Q9BXF3 1484 aa13.35□□□□□ -0.27
HLA-DPA1-247ENST00000479107 HRCP23327 699 aa13.31□□□□□ -0.28
HLA-DPA1-247ENST00000479107 FBLN2P98095 1184 aa13.25□□□□□ -0.29
HLA-DPA1-247ENST00000479107 EHMT2Q96KQ7 1210 aa13.19□□□□□ -0.3
HLA-DPA1-247ENST00000479107 AEBP2Q6ZN18 517 aaPredicted RBP13.19□□□□□ -0.3
HLA-DPA1-247ENST00000479107 TRHP20396 242 aaPredicted RBP13.18□□□□□ -0.3
HLA-DPA1-247ENST00000479107 CCER1Q8TC90 406 aaPredicted RBP13.07□□□□□ -0.32
HLA-DPA1-247ENST00000479107 TRIM26Q12899 539 aaPredicted RBP13.02□□□□□ -0.32
HLA-DPA1-247ENST00000479107 APLP2Q06481 763 aa13.01□□□□□ -0.33
HLA-DPA1-247ENST00000479107 ERICH6Q7L0X2 663 aa13.01□□□□□ -0.33
HLA-DPA1-247ENST00000479107 NPM1P06748 294 aaKnown RBP eCLIP13□□□□□ -0.33
HLA-DPA1-247ENST00000479107 TTBK1Q5TCY1 1321 aaPredicted RBP12.94□□□□□ -0.34
HLA-DPA1-247ENST00000479107 ZCCHC6Q5VYS8 1495 aaKnown RBP12.93□□□□□ -0.34
HLA-DPA1-247ENST00000479107 PPARGC1BQ86YN6 1023 aaKnown RBP12.9□□□□□ -0.34
HLA-DPA1-247ENST00000479107 PDS5BQ9NTI5 1447 aa12.89□□□□□ -0.35
HLA-DPA1-247ENST00000479107 OSCARQ8IYS5 282 aa12.89□□□□□ -0.35
HLA-DPA1-247ENST00000479107 YTHDC1Q96MU7 727 aaKnown RBP12.88□□□□□ -0.35
HLA-DPA1-247ENST00000479107 MYO15BQ96JP2 1530 aa12.88□□□□□ -0.35
HLA-DPA1-247ENST00000479107 DNAJC5Q9H3Z4 198 aa12.87□□□□□ -0.35
HLA-DPA1-247ENST00000479107 BAZ1BQ9UIG0 1483 aaKnown RBP12.85□□□□□ -0.35
HLA-DPA1-247ENST00000479107 CHMP7Q8WUX9 453 aaPredicted RBP12.84□□□□□ -0.35
HLA-DPA1-247ENST00000479107 NEFLP07196 543 aa12.81□□□□□ -0.36
HLA-DPA1-247ENST00000479107 MYT1LQ9UL68 1186 aa12.8□□□□□ -0.36
HLA-DPA1-247ENST00000479107 CC2D2AQ9P2K1 1620 aa12.78□□□□□ -0.36
HLA-DPA1-247ENST00000479107 CHIC1Q5VXU3 224 aa12.78□□□□□ -0.36
HLA-DPA1-247ENST00000479107 EIF4G1Q04637 1599 aaKnown RBP12.75□□□□□ -0.37
HLA-DPA1-247ENST00000479107 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.75□□□□□ -0.37
HLA-DPA1-247ENST00000479107 HNRNPUL2Q1KMD3 747 aaKnown RBP12.75□□□□□ -0.37
HLA-DPA1-247ENST00000479107 DCAF1Q9Y4B6 1507 aa12.75□□□□□ -0.37
HLA-DPA1-247ENST00000479107 CYB5RLQ6IPT4 315 aa12.7□□□□□ -0.38
HLA-DPA1-247ENST00000479107 SMARCA2P51531 1590 aa12.68□□□□□ -0.38
HLA-DPA1-247ENST00000479107 LOC105371045A0A1W2PR82 267 aa12.66□□□□□ -0.38
HLA-DPA1-247ENST00000479107 ATP1B4Q9UN42 357 aaPredicted RBP12.66□□□□□ -0.38
HLA-DPA1-247ENST00000479107 DIEXFQ68CQ4 756 aaKnown RBP12.63□□□□□ -0.39
HLA-DPA1-247ENST00000479107 GTF3C3Q9Y5Q9 886 aa12.6□□□□□ -0.39
HLA-DPA1-247ENST00000479107 UBTFP17480 764 aaKnown RBP12.57□□□□□ -0.4
HLA-DPA1-247ENST00000479107 RANGAP1P46060 587 aaPredicted RBP12.57□□□□□ -0.4
HLA-DPA1-247ENST00000479107 CUX2O14529 1486 aa12.57□□□□□ -0.4
HLA-DPA1-247ENST00000479107 CADPSQ9ULU8 1353 aa12.54□□□□□ -0.4
HLA-DPA1-247ENST00000479107 BAZ1AQ9NRL2 1556 aaPredicted RBP12.53□□□□□ -0.4
HLA-DPA1-247ENST00000479107 ACIN1Q9UKV3 1341 aaKnown RBP12.53□□□□□ -0.4
HLA-DPA1-247ENST00000479107 ESF1Q9H501 851 aaKnown RBP12.51□□□□□ -0.41
HLA-DPA1-247ENST00000479107 CEP164Q9UPV0 1460 aa12.5□□□□□ -0.41
HLA-DPA1-247ENST00000479107 ATAD2BQ9ULI0 1458 aa12.49□□□□□ -0.41
HLA-DPA1-247ENST00000479107 NCAPD3P42695 1498 aa12.48□□□□□ -0.41
HLA-DPA1-247ENST00000479107 PLPPR3Q6T4P5 718 aa12.46□□□□□ -0.42
HLA-DPA1-247ENST00000479107 BICRAQ9NZM4 1560 aa12.44□□□□□ -0.42
HLA-DPA1-247ENST00000479107 ARID4BQ4LE39 1312 aaPredicted RBP12.38□□□□□ -0.43
HLA-DPA1-247ENST00000479107 MRC2Q9UBG0 1479 aa12.37□□□□□ -0.43
HLA-DPA1-247ENST00000479107 FANCD2Q9BXW9 1451 aa12.33□□□□□ -0.44
HLA-DPA1-247ENST00000479107 RTL5Q5HYW3 569 aaPredicted RBP12.32□□□□□ -0.44
HLA-DPA1-247ENST00000479107 SCAF1Q9H7N4 1312 aaKnown RBP12.32□□□□□ -0.44
HLA-DPA1-247ENST00000479107 ZNF316A6NFI3 1004 aaPredicted RBP12.31□□□□□ -0.44
HLA-DPA1-247ENST00000479107 NESP48681 1621 aa12.3□□□□□ -0.44
HLA-DPA1-247ENST00000479107 DAXXQ9UER7 740 aaPredicted RBP12.29□□□□□ -0.44
HLA-DPA1-247ENST00000479107 CLSPNQ9HAW4 1339 aa12.26□□□□□ -0.45
HLA-DPA1-247ENST00000479107 ABCC8Q09428 1581 aa12.26□□□□□ -0.45
HLA-DPA1-247ENST00000479107 SOGA1O94964 1423 aa12.23□□□□□ -0.45
HLA-DPA1-247ENST00000479107 TDRD9Q8NDG6 1382 aaKnown RBP12.22□□□□□ -0.45
HLA-DPA1-247ENST00000479107 FAM69CQ0P6D2 419 aa12.22□□□□□ -0.45
HLA-DPA1-247ENST00000479107 NEUROD1Q13562 356 aa12.22□□□□□ -0.45
HLA-DPA1-247ENST00000479107 KCNH8Q96L42 1107 aa12.22□□□□□ -0.45
HLA-DPA1-247ENST00000479107 SMARCA4P51532 1647 aa12.21□□□□□ -0.45
HLA-DPA1-247ENST00000479107 HMGXB3Q12766 1538 aa12.2□□□□□ -0.46
HLA-DPA1-247ENST00000479107 BCANQ96GW7 911 aa12.2□□□□□ -0.46
HLA-DPA1-247ENST00000479107 ARID3CA6NKF2 412 aa12.19□□□□□ -0.46
HLA-DPA1-247ENST00000479107 LAMC3Q9Y6N6 1575 aa12.19□□□□□ -0.46
HLA-DPA1-247ENST00000479107 CDK11AQ9UQ88 783 aaPredicted RBP12.18□□□□□ -0.46
HLA-DPA1-247ENST00000479107 ITGAEP38570 1179 aa12.17□□□□□ -0.46
HLA-DPA1-247ENST00000479107 IFT140Q96RY7 1462 aa12.15□□□□□ -0.46
HLA-DPA1-247ENST00000479107 MROH2BQ7Z745 1585 aa12.12□□□□□ -0.47
HLA-DPA1-247ENST00000479107 UNC13AQ9UPW8 1703 aa12.12□□□□□ -0.47
HLA-DPA1-247ENST00000479107 RSF1Q96T23 1441 aaPredicted RBP12.11□□□□□ -0.47
HLA-DPA1-247ENST00000479107 WRNQ14191 1432 aaPredicted RBP eCLIP12.09□□□□□ -0.47
HLA-DPA1-247ENST00000479107 CARMIL2Q6F5E8 1435 aa12.09□□□□□ -0.47
HLA-DPA1-247ENST00000479107 P3H3Q8IVL6 736 aa12.07□□□□□ -0.48
HLA-DPA1-247ENST00000479107 JPH4Q96JJ6 628 aa12.06□□□□□ -0.48
HLA-DPA1-247ENST00000479107 ANP32CO43423 234 aa12.05□□□□□ -0.48
HLA-DPA1-247ENST00000479107 AQRO60306 1485 aaKnown RBP eCLIP12.02□□□□□ -0.48
HLA-DPA1-247ENST00000479107 PLEKHD1A6NEE1 506 aa12.02□□□□□ -0.49
HLA-DPA1-247ENST00000479107 POLR3GLQ9BT43 218 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms