RNA–Protein interactions for RNA: ENST00000477739.1

CMC1-209, Transcript of C-X9-C motif containing 1, humanhuman

TSL 1 (best)

Gene CMC1, Length 3,749 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-209ENST00000477739 NISCHQ9Y2I1 1504 aa19.37■□□□□ 0.69
CMC1-209ENST00000477739 SHROOM4Q9ULL8 1493 aa17.23■□□□□ 0.35
CMC1-209ENST00000477739 SUPT5HO00267 1087 aaKnown RBP17.11■□□□□ 0.33
CMC1-209ENST00000477739 DCAF8L2P0C7V8 631 aa17.06■□□□□ 0.32
CMC1-209ENST00000477739 EHMT2Q96KQ7 1210 aa16.48■□□□□ 0.23
CMC1-209ENST00000477739 PCGF6Q9BYE7 350 aa16.37■□□□□ 0.21
CMC1-209ENST00000477739 ZCCHC6Q5VYS8 1495 aaKnown RBP16.3■□□□□ 0.2
CMC1-209ENST00000477739 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
CMC1-209ENST00000477739 PPARGC1BQ86YN6 1023 aaKnown RBP16.21■□□□□ 0.19
CMC1-209ENST00000477739 LOC105371045A0A1W2PR82 267 aa16.07■□□□□ 0.16
CMC1-209ENST00000477739 FAM9AQ8IZU1 332 aaPredicted RBP16.06■□□□□ 0.16
CMC1-209ENST00000477739 CHIC1Q5VXU3 224 aa15.97■□□□□ 0.15
CMC1-209ENST00000477739 HRCP23327 699 aa15.9■□□□□ 0.14
CMC1-209ENST00000477739 TTBK1Q5TCY1 1321 aaPredicted RBP15.9■□□□□ 0.14
CMC1-209ENST00000477739 MYO15BQ96JP2 1530 aa15.76■□□□□ 0.11
CMC1-209ENST00000477739 DCAF1Q9Y4B6 1507 aa15.69■□□□□ 0.1
CMC1-209ENST00000477739 ABCC9O60706 1549 aa15.64■□□□□ 0.1
CMC1-209ENST00000477739 SCRIBQ14160 1630 aa15.57■□□□□ 0.08
CMC1-209ENST00000477739 TRIM41Q8WV44 630 aa15.52■□□□□ 0.07
CMC1-209ENST00000477739 TRIM26Q12899 539 aaPredicted RBP15.39■□□□□ 0.05
CMC1-209ENST00000477739 RSF1Q96T23 1441 aaPredicted RBP15.39■□□□□ 0.05
CMC1-209ENST00000477739 RANGAP1P46060 587 aaPredicted RBP15.37■□□□□ 0.05
CMC1-209ENST00000477739 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.31■□□□□ 0.04
CMC1-209ENST00000477739 CCER1Q8TC90 406 aaPredicted RBP15.27■□□□□ 0.03
CMC1-209ENST00000477739 NACADO15069 1562 aa15.23■□□□□ 0.03
CMC1-209ENST00000477739 YTHDC1Q96MU7 727 aaKnown RBP15.22■□□□□ 0.03
CMC1-209ENST00000477739 CECR2Q9BXF3 1484 aa15.22■□□□□ 0.03
CMC1-209ENST00000477739 RB1CC1Q8TDY2 1594 aa15.15■□□□□ 0.02
CMC1-209ENST00000477739 PABPN1Q86U42 306 aaKnown RBP eCLIP15.13■□□□□ 0.01
CMC1-209ENST00000477739 MROH2BQ7Z745 1585 aa15.1■□□□□ 0.01
CMC1-209ENST00000477739 SCAF1Q9H7N4 1312 aaKnown RBP15.02□□□□□ -0.01
CMC1-209ENST00000477739 UBTFP17480 764 aaKnown RBP15.02□□□□□ -0.01
CMC1-209ENST00000477739 ZEB1P37275 1124 aaPredicted RBP14.99□□□□□ -0.01
CMC1-209ENST00000477739 WIZO95785 1651 aa14.97□□□□□ -0.01
CMC1-209ENST00000477739 HNRNPUL2Q1KMD3 747 aaKnown RBP14.95□□□□□ -0.02
CMC1-209ENST00000477739 BAZ1AQ9NRL2 1556 aaPredicted RBP14.9□□□□□ -0.02
CMC1-209ENST00000477739 GTF3C3Q9Y5Q9 886 aa14.87□□□□□ -0.03
CMC1-209ENST00000477739 DIEXFQ68CQ4 756 aaKnown RBP14.86□□□□□ -0.03
CMC1-209ENST00000477739 NEUROD1Q13562 356 aa14.86□□□□□ -0.03
CMC1-209ENST00000477739 CCDC88BA6NC98 1476 aa14.76□□□□□ -0.05
CMC1-209ENST00000477739 CENPBP07199 599 aaPredicted RBP14.76□□□□□ -0.05
CMC1-209ENST00000477739 ITGAEP38570 1179 aa14.75□□□□□ -0.05
CMC1-209ENST00000477739 ABCC8Q09428 1581 aa14.73□□□□□ -0.05
CMC1-209ENST00000477739 SMARCA4P51532 1647 aa14.71□□□□□ -0.05
CMC1-209ENST00000477739 APLP2Q06481 763 aa14.71□□□□□ -0.05
CMC1-209ENST00000477739 TOP2AP11388 1531 aaKnown RBP14.71□□□□□ -0.06
CMC1-209ENST00000477739 CSRNP3Q8WYN3 585 aa14.7□□□□□ -0.06
CMC1-209ENST00000477739 ACIN1Q9UKV3 1341 aaKnown RBP14.69□□□□□ -0.06
CMC1-209ENST00000477739 SOGA1O94964 1423 aa14.65□□□□□ -0.06
CMC1-209ENST00000477739 SMARCA2P51531 1590 aa14.61□□□□□ -0.07
CMC1-209ENST00000477739 ATP1B4Q9UN42 357 aaPredicted RBP14.61□□□□□ -0.07
CMC1-209ENST00000477739 PELP1Q8IZL8 1130 aaKnown RBP14.57□□□□□ -0.08
CMC1-209ENST00000477739 WRNQ14191 1432 aaPredicted RBP eCLIP14.56□□□□□ -0.08
CMC1-209ENST00000477739 CEP162Q5TB80 1403 aa14.56□□□□□ -0.08
CMC1-209ENST00000477739 UNC13AQ9UPW8 1703 aa14.54□□□□□ -0.08
CMC1-209ENST00000477739 RUSC2Q8N2Y8 1516 aa14.53□□□□□ -0.08
CMC1-209ENST00000477739 BAZ1BQ9UIG0 1483 aaKnown RBP14.52□□□□□ -0.08
CMC1-209ENST00000477739 MIER1Q8N108 512 aa14.52□□□□□ -0.09
CMC1-209ENST00000477739 BICRAQ9NZM4 1560 aa14.5□□□□□ -0.09
CMC1-209ENST00000477739 TNIKQ9UKE5 1360 aa14.49□□□□□ -0.09
CMC1-209ENST00000477739 BCANQ96GW7 911 aa14.49□□□□□ -0.09
CMC1-209ENST00000477739 EEA1Q15075 1411 aa14.48□□□□□ -0.09
CMC1-209ENST00000477739 ZNF316A6NFI3 1004 aaPredicted RBP14.47□□□□□ -0.09
CMC1-209ENST00000477739 ATAD2BQ9ULI0 1458 aa14.47□□□□□ -0.09
CMC1-209ENST00000477739 EIF4G1Q04637 1599 aaKnown RBP14.46□□□□□ -0.1
CMC1-209ENST00000477739 GOLGA3Q08378 1498 aa14.44□□□□□ -0.1
CMC1-209ENST00000477739 CNGB1Q14028 1251 aaPredicted RBP14.4□□□□□ -0.1
CMC1-209ENST00000477739 CLIP1P30622 1438 aa14.36□□□□□ -0.11
CMC1-209ENST00000477739 HIRIP3Q9BW71 556 aaPredicted RBP14.35□□□□□ -0.11
CMC1-209ENST00000477739 CEP164Q9UPV0 1460 aa14.35□□□□□ -0.11
CMC1-209ENST00000477739 SYNJ1O43426 1573 aa14.3□□□□□ -0.12
CMC1-209ENST00000477739 P3H3Q8IVL6 736 aa14.3□□□□□ -0.12
CMC1-209ENST00000477739 PEG3Q9GZU2 1588 aa14.27□□□□□ -0.13
CMC1-209ENST00000477739 RAPGEF2Q9Y4G8 1499 aa14.26□□□□□ -0.13
CMC1-209ENST00000477739 FAM50AQ14320 339 aaKnown RBP14.21□□□□□ -0.13
CMC1-209ENST00000477739 VPS8Q8N3P4 1428 aa14.19□□□□□ -0.14
CMC1-209ENST00000477739 KCNH8Q96L42 1107 aa14.16□□□□□ -0.14
CMC1-209ENST00000477739 KIF27Q86VH2 1401 aa14.16□□□□□ -0.14
CMC1-209ENST00000477739 NCAPD3P42695 1498 aa14.15□□□□□ -0.14
CMC1-209ENST00000477739 SENP3-EIF4A1A0A087X0R7 540 aa14.13□□□□□ -0.15
CMC1-209ENST00000477739 ARID3CA6NKF2 412 aa14.13□□□□□ -0.15
CMC1-209ENST00000477739 DDX10Q13206 875 aaKnown RBP14.13□□□□□ -0.15
CMC1-209ENST00000477739 TRIM52Q96A61 297 aa14.12□□□□□ -0.15
CMC1-209ENST00000477739 KIF21BO75037 1637 aa14.12□□□□□ -0.15
CMC1-209ENST00000477739 KANK4Q5T7N3 995 aaPredicted RBP14.1□□□□□ -0.15
CMC1-209ENST00000477739 TOP2BQ02880 1626 aa14.08□□□□□ -0.16
CMC1-209ENST00000477739 IRX6P78412 446 aaPredicted RBP14.06□□□□□ -0.16
CMC1-209ENST00000477739 POLR3GLQ9BT43 218 aa14.06□□□□□ -0.16
CMC1-209ENST00000477739 CUX2O14529 1486 aa14.06□□□□□ -0.16
CMC1-209ENST00000477739 FKBP8Q14318 412 aa14.04□□□□□ -0.16
CMC1-209ENST00000477739 CUX1P39880 1505 aa14.04□□□□□ -0.16
CMC1-209ENST00000477739 HMGXB3Q12766 1538 aa14.04□□□□□ -0.16
CMC1-209ENST00000477739 SIN3AQ96ST3 1273 aa14.03□□□□□ -0.16
CMC1-209ENST00000477739 CFTRP13569 1480 aa14.03□□□□□ -0.16
CMC1-209ENST00000477739 CADPSQ9ULU8 1353 aa14.03□□□□□ -0.16
CMC1-209ENST00000477739 PRXQ9BXM0 1461 aa14□□□□□ -0.17
CMC1-209ENST00000477739 NEFLP07196 543 aa13.99□□□□□ -0.17
CMC1-209ENST00000477739 CARMIL1Q5VZK9 1371 aa13.98□□□□□ -0.17
CMC1-209ENST00000477739 SUPT16HQ9Y5B9 1047 aaKnown RBP13.98□□□□□ -0.17
CMC1-209ENST00000477739 ARAP1Q96P48 1450 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms