RNA–Protein interactions for RNA: ENST00000475158.1

CDH23-211, Transcript of cadherin related 23, humanhuman

TSL 1 (best)

Gene CDH23, Length 4,114 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH23-211ENST00000475158 DCAF8L2P0C7V8 631 aa17.17■□□□□ 0.34
CDH23-211ENST00000475158 NISCHQ9Y2I1 1504 aa16.79■□□□□ 0.28
CDH23-211ENST00000475158 SUPT5HO00267 1087 aaKnown RBP16.51■□□□□ 0.23
CDH23-211ENST00000475158 SHROOM4Q9ULL8 1493 aa16.38■□□□□ 0.21
CDH23-211ENST00000475158 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
CDH23-211ENST00000475158 FAM9AQ8IZU1 332 aaPredicted RBP15.58■□□□□ 0.08
CDH23-211ENST00000475158 TTBK1Q5TCY1 1321 aaPredicted RBP15.42■□□□□ 0.06
CDH23-211ENST00000475158 PCGF6Q9BYE7 350 aa15.41■□□□□ 0.06
CDH23-211ENST00000475158 PELP1Q8IZL8 1130 aaKnown RBP15.36■□□□□ 0.05
CDH23-211ENST00000475158 RANGAP1P46060 587 aaPredicted RBP15.18■□□□□ 0.02
CDH23-211ENST00000475158 TRIM41Q8WV44 630 aa15.11■□□□□ 0.01
CDH23-211ENST00000475158 MYT1Q01538 1121 aa15.06■□□□□ 0
CDH23-211ENST00000475158 PPARGC1BQ86YN6 1023 aaKnown RBP15.05■□□□□ -0
CDH23-211ENST00000475158 APLP2Q06481 763 aa15.02■□□□□ -0
CDH23-211ENST00000475158 LOC105371045A0A1W2PR82 267 aa14.93□□□□□ -0.02
CDH23-211ENST00000475158 UBTFP17480 764 aaKnown RBP14.85□□□□□ -0.03
CDH23-211ENST00000475158 CCER1Q8TC90 406 aaPredicted RBP14.84□□□□□ -0.03
CDH23-211ENST00000475158 CHIC1Q5VXU3 224 aa14.82□□□□□ -0.04
CDH23-211ENST00000475158 ATP1B4Q9UN42 357 aaPredicted RBP14.78□□□□□ -0.04
CDH23-211ENST00000475158 HRCP23327 699 aa14.71□□□□□ -0.05
CDH23-211ENST00000475158 YTHDC1Q96MU7 727 aaKnown RBP14.6□□□□□ -0.07
CDH23-211ENST00000475158 TRIM26Q12899 539 aaPredicted RBP14.58□□□□□ -0.08
CDH23-211ENST00000475158 ZEB1P37275 1124 aaPredicted RBP14.57□□□□□ -0.08
CDH23-211ENST00000475158 CENPBP07199 599 aaPredicted RBP14.56□□□□□ -0.08
CDH23-211ENST00000475158 ITGAEP38570 1179 aa14.49□□□□□ -0.09
CDH23-211ENST00000475158 HNRNPUL2Q1KMD3 747 aaKnown RBP14.45□□□□□ -0.1
CDH23-211ENST00000475158 PABPN1Q86U42 306 aaKnown RBP eCLIP14.43□□□□□ -0.1
CDH23-211ENST00000475158 ABCC9O60706 1549 aa14.43□□□□□ -0.1
CDH23-211ENST00000475158 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.41□□□□□ -0.1
CDH23-211ENST00000475158 CNGB1Q14028 1251 aaPredicted RBP14.22□□□□□ -0.13
CDH23-211ENST00000475158 ERICH6Q7L0X2 663 aa14.22□□□□□ -0.13
CDH23-211ENST00000475158 GTF3C3Q9Y5Q9 886 aa14.13□□□□□ -0.15
CDH23-211ENST00000475158 POLR3GLQ9BT43 218 aa14.13□□□□□ -0.15
CDH23-211ENST00000475158 DIEXFQ68CQ4 756 aaKnown RBP14.07□□□□□ -0.16
CDH23-211ENST00000475158 NEFLP07196 543 aa14.06□□□□□ -0.16
CDH23-211ENST00000475158 SCAF1Q9H7N4 1312 aaKnown RBP14.02□□□□□ -0.16
CDH23-211ENST00000475158 FAM50AQ14320 339 aaKnown RBP14.01□□□□□ -0.17
CDH23-211ENST00000475158 NEUROD1Q13562 356 aa13.96□□□□□ -0.18
CDH23-211ENST00000475158 MYT1LQ9UL68 1186 aa13.96□□□□□ -0.18
CDH23-211ENST00000475158 P3H3Q8IVL6 736 aa13.94□□□□□ -0.18
CDH23-211ENST00000475158 ACIN1Q9UKV3 1341 aaKnown RBP13.91□□□□□ -0.18
CDH23-211ENST00000475158 ZCCHC6Q5VYS8 1495 aaKnown RBP13.91□□□□□ -0.18
CDH23-211ENST00000475158 ARID3CA6NKF2 412 aa13.9□□□□□ -0.18
CDH23-211ENST00000475158 CSRNP3Q8WYN3 585 aa13.9□□□□□ -0.18
CDH23-211ENST00000475158 SCRIBQ14160 1630 aa13.88□□□□□ -0.19
CDH23-211ENST00000475158 TRIM52Q96A61 297 aa13.83□□□□□ -0.2
CDH23-211ENST00000475158 MYO15BQ96JP2 1530 aa13.83□□□□□ -0.2
CDH23-211ENST00000475158 BCANQ96GW7 911 aa13.8□□□□□ -0.2
CDH23-211ENST00000475158 FBLN2P98095 1184 aa13.79□□□□□ -0.2
CDH23-211ENST00000475158 ZNF326Q5BKZ1 582 aaKnown RBP13.76□□□□□ -0.21
CDH23-211ENST00000475158 ZNF316A6NFI3 1004 aaPredicted RBP13.73□□□□□ -0.21
CDH23-211ENST00000475158 SLC4A1APQ9BWU0 796 aaKnown RBP13.68□□□□□ -0.22
CDH23-211ENST00000475158 BCL11AQ9H165 835 aa13.62□□□□□ -0.23
CDH23-211ENST00000475158 DCAF1Q9Y4B6 1507 aa13.59□□□□□ -0.23
CDH23-211ENST00000475158 RSF1Q96T23 1441 aaPredicted RBP13.59□□□□□ -0.23
CDH23-211ENST00000475158 ZNF777Q9ULD5 760 aaPredicted RBP13.58□□□□□ -0.24
CDH23-211ENST00000475158 ANP32CO43423 234 aa13.56□□□□□ -0.24
CDH23-211ENST00000475158 HIRIP3Q9BW71 556 aaPredicted RBP13.54□□□□□ -0.24
CDH23-211ENST00000475158 DDX10Q13206 875 aaKnown RBP13.51□□□□□ -0.25
CDH23-211ENST00000475158 CHIC2Q9UKJ5 165 aa13.51□□□□□ -0.25
CDH23-211ENST00000475158 CCDC180Q9P1Z9 1646 aa13.47□□□□□ -0.25
CDH23-211ENST00000475158 DAXXQ9UER7 740 aaPredicted RBP13.47□□□□□ -0.25
CDH23-211ENST00000475158 RTL5Q5HYW3 569 aaPredicted RBP13.46□□□□□ -0.26
CDH23-211ENST00000475158 EIF5BO60841 1220 aaKnown RBP13.44□□□□□ -0.26
CDH23-211ENST00000475158 MIER1Q8N108 512 aa13.44□□□□□ -0.26
CDH23-211ENST00000475158 CECR2Q9BXF3 1484 aa13.43□□□□□ -0.26
CDH23-211ENST00000475158 ANP32EQ9BTT0 268 aa13.42□□□□□ -0.26
CDH23-211ENST00000475158 CLSPNQ9HAW4 1339 aa13.42□□□□□ -0.26
CDH23-211ENST00000475158 CLIP1P30622 1438 aa13.39□□□□□ -0.27
CDH23-211ENST00000475158 CEP162Q5TB80 1403 aa13.37□□□□□ -0.27
CDH23-211ENST00000475158 FKBP8Q14318 412 aa13.36□□□□□ -0.27
CDH23-211ENST00000475158 SALL2Q9Y467 1007 aaPredicted RBP13.36□□□□□ -0.27
CDH23-211ENST00000475158 TONSLQ96HA7 1378 aa13.36□□□□□ -0.27
CDH23-211ENST00000475158 SENP3-EIF4A1A0A087X0R7 540 aa13.35□□□□□ -0.27
CDH23-211ENST00000475158 FAM9BQ8IZU0 186 aa13.34□□□□□ -0.27
CDH23-211ENST00000475158 HNRNPUQ00839 825 aaKnown RBP eCLIP13.33□□□□□ -0.27
CDH23-211ENST00000475158 RRP7BPQ9NSQ0 103 aa13.31□□□□□ -0.28
CDH23-211ENST00000475158 WRNQ14191 1432 aaPredicted RBP eCLIP13.29□□□□□ -0.28
CDH23-211ENST00000475158 CDK11AQ9UQ88 783 aaPredicted RBP13.29□□□□□ -0.28
CDH23-211ENST00000475158 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.28□□□□□ -0.28
CDH23-211ENST00000475158 IRX6P78412 446 aaPredicted RBP13.28□□□□□ -0.28
CDH23-211ENST00000475158 KDM2AQ9Y2K7 1162 aa13.27□□□□□ -0.29
CDH23-211ENST00000475158 SOGA1O94964 1423 aa13.26□□□□□ -0.29
CDH23-211ENST00000475158 MTUS2Q5JR59 1369 aa13.26□□□□□ -0.29
CDH23-211ENST00000475158 SENP3Q9H4L4 574 aaPredicted RBP13.26□□□□□ -0.29
CDH23-211ENST00000475158 CHGAP10645 457 aaKnown RBP13.24□□□□□ -0.29
CDH23-211ENST00000475158 SIN3AQ96ST3 1273 aa13.22□□□□□ -0.29
CDH23-211ENST00000475158 RB1CC1Q8TDY2 1594 aa13.22□□□□□ -0.29
CDH23-211ENST00000475158 GOLGA3Q08378 1498 aa13.21□□□□□ -0.29
CDH23-211ENST00000475158 NPM2Q86SE8 214 aaKnown RBP13.2□□□□□ -0.3
CDH23-211ENST00000475158 NBR1Q14596 966 aa13.18□□□□□ -0.3
CDH23-211ENST00000475158 PLPPR3Q6T4P5 718 aa13.18□□□□□ -0.3
CDH23-211ENST00000475158 TNIKQ9UKE5 1360 aa13.18□□□□□ -0.3
CDH23-211ENST00000475158 CHMP7Q8WUX9 453 aaPredicted RBP13.17□□□□□ -0.3
CDH23-211ENST00000475158 BAZ1BQ9UIG0 1483 aaKnown RBP13.17□□□□□ -0.3
CDH23-211ENST00000475158 MROH2BQ7Z745 1585 aa13.17□□□□□ -0.3
CDH23-211ENST00000475158 SLC24A1O60721 1099 aa13.16□□□□□ -0.3
CDH23-211ENST00000475158 MRS2Q9HD23 443 aa13.16□□□□□ -0.3
CDH23-211ENST00000475158 CANXP27824 592 aaKnown RBP13.15□□□□□ -0.3
CDH23-211ENST00000475158 ABCC8Q09428 1581 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms