RNA–Protein interactions for RNA: ENST00000467439.1

RPSAP39-201, Transcript of ribosomal protein SA pseudogene 39, humanhuman

BASIC

Gene RPSAP39, Length 883 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPSAP39-201ENST00000467439 CHIC1Q5VXU3 224 aa18.63■□□□□ 0.57
RPSAP39-201ENST00000467439 AEBP2Q6ZN18 517 aaPredicted RBP18.29■□□□□ 0.52
RPSAP39-201ENST00000467439 PHF23Q9BUL5 403 aaPredicted RBP16.53■□□□□ 0.24
RPSAP39-201ENST00000467439 PLPPR3Q6T4P5 718 aa15.48■□□□□ 0.07
RPSAP39-201ENST00000467439 SENP3Q9H4L4 574 aaPredicted RBP15.32■□□□□ 0.04
RPSAP39-201ENST00000467439 NISCHQ9Y2I1 1504 aa14.62□□□□□ -0.07
RPSAP39-201ENST00000467439 ADRA2BP18089 450 aa14.55□□□□□ -0.08
RPSAP39-201ENST00000467439 EHMT2Q96KQ7 1210 aa14.45□□□□□ -0.1
RPSAP39-201ENST00000467439 KCNA4P22459 653 aa14.43□□□□□ -0.1
RPSAP39-201ENST00000467439 PPP6R1Q9UPN7 881 aa14.32□□□□□ -0.12
RPSAP39-201ENST00000467439 FOXD1Q16676 465 aa14.16□□□□□ -0.14
RPSAP39-201ENST00000467439 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
RPSAP39-201ENST00000467439 SLC4A1APQ9BWU0 796 aaKnown RBP13.87□□□□□ -0.19
RPSAP39-201ENST00000467439 PPP4R3CPQ6ZMV5 832 aa13.77□□□□□ -0.21
RPSAP39-201ENST00000467439 NCBP3Q53F19 620 aaKnown RBP13.62□□□□□ -0.23
RPSAP39-201ENST00000467439 PIAS4Q8N2W9 510 aaPredicted RBP13.54□□□□□ -0.24
RPSAP39-201ENST00000467439 ABCC9O60706 1549 aa13.49□□□□□ -0.25
RPSAP39-201ENST00000467439 NPM3O75607 178 aaKnown RBP13.46□□□□□ -0.25
RPSAP39-201ENST00000467439 ZBTB22O15209 634 aa13.31□□□□□ -0.28
RPSAP39-201ENST00000467439 CCDC180Q9P1Z9 1646 aa13.28□□□□□ -0.28
RPSAP39-201ENST00000467439 CNKSR2Q8WXI2 1034 aa13.18□□□□□ -0.3
RPSAP39-201ENST00000467439 SCAF1Q9H7N4 1312 aaKnown RBP13.04□□□□□ -0.32
RPSAP39-201ENST00000467439 FOXD4L1Q9NU39 408 aa13□□□□□ -0.33
RPSAP39-201ENST00000467439 SLC24A1O60721 1099 aa12.98□□□□□ -0.33
RPSAP39-201ENST00000467439 DNAJC5BQ9UF47 199 aa12.92□□□□□ -0.34
RPSAP39-201ENST00000467439 RTN4Q9NQC3 1192 aaKnown RBP12.89□□□□□ -0.35
RPSAP39-201ENST00000467439 AMER1Q5JTC6 1135 aaPredicted RBP12.84□□□□□ -0.35
RPSAP39-201ENST00000467439 MAPK8IP2Q13387 824 aaPredicted RBP12.77□□□□□ -0.37
RPSAP39-201ENST00000467439 RB1CC1Q8TDY2 1594 aa12.75□□□□□ -0.37
RPSAP39-201ENST00000467439 RNF216Q9NWF9 866 aaPredicted RBP12.72□□□□□ -0.37
RPSAP39-201ENST00000467439 POTEDQ86YR6 584 aa12.71□□□□□ -0.37
RPSAP39-201ENST00000467439 MSH5O43196 834 aa12.67□□□□□ -0.38
RPSAP39-201ENST00000467439 NACADO15069 1562 aa12.59□□□□□ -0.39
RPSAP39-201ENST00000467439 SLC4A2P04920 1241 aa12.53□□□□□ -0.4
RPSAP39-201ENST00000467439 FKBP8Q14318 412 aa12.5□□□□□ -0.41
RPSAP39-201ENST00000467439 PABPN1Q86U42 306 aaKnown RBP eCLIP12.49□□□□□ -0.41
RPSAP39-201ENST00000467439 UNC13AQ9UPW8 1703 aa12.48□□□□□ -0.41
RPSAP39-201ENST00000467439 ATXN8OSP0DMR3 200 aa12.46□□□□□ -0.41
RPSAP39-201ENST00000467439 HOXD11P31277 338 aaPredicted RBP12.46□□□□□ -0.41
RPSAP39-201ENST00000467439 DCAF8L2P0C7V8 631 aa12.45□□□□□ -0.42
RPSAP39-201ENST00000467439 MYCNP04198 464 aaPredicted RBP12.39□□□□□ -0.43
RPSAP39-201ENST00000467439 DMRT2Q9Y5R5 561 aa12.38□□□□□ -0.43
RPSAP39-201ENST00000467439 BICRAQ9NZM4 1560 aa12.36□□□□□ -0.43
RPSAP39-201ENST00000467439 MYO15BQ96JP2 1530 aa12.32□□□□□ -0.44
RPSAP39-201ENST00000467439 CC2D2AQ9P2K1 1620 aa12.19□□□□□ -0.46
RPSAP39-201ENST00000467439 CECR2Q9BXF3 1484 aa12.18□□□□□ -0.46
RPSAP39-201ENST00000467439 SHROOM4Q9ULL8 1493 aa12.18□□□□□ -0.46
RPSAP39-201ENST00000467439 EIF4G1Q04637 1599 aaKnown RBP12.09□□□□□ -0.47
RPSAP39-201ENST00000467439 SCRIBQ14160 1630 aa12.07□□□□□ -0.48
RPSAP39-201ENST00000467439 ZCCHC6Q5VYS8 1495 aaKnown RBP12.07□□□□□ -0.48
RPSAP39-201ENST00000467439 DCAF1Q9Y4B6 1507 aa12.06□□□□□ -0.48
RPSAP39-201ENST00000467439 ATF5Q9Y2D1 282 aaPredicted RBP12.06□□□□□ -0.48
RPSAP39-201ENST00000467439 DNAJC5Q9H3Z4 198 aa11.99□□□□□ -0.49
RPSAP39-201ENST00000467439 SAMD1Q6SPF0 538 aaPredicted RBP11.88□□□□□ -0.51
RPSAP39-201ENST00000467439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.87□□□□□ -0.51
RPSAP39-201ENST00000467439 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.86□□□□□ -0.51
RPSAP39-201ENST00000467439 HNRNPUL2Q1KMD3 747 aaKnown RBP11.86□□□□□ -0.51
RPSAP39-201ENST00000467439 PLCB2Q00722 1185 aa11.84□□□□□ -0.51
RPSAP39-201ENST00000467439 DCAF8L1A6NGE4 600 aa11.8□□□□□ -0.52
RPSAP39-201ENST00000467439 U3KPZ7 1027 aaPredicted RBP11.79□□□□□ -0.52
RPSAP39-201ENST00000467439 FBXO3Q9UK99 471 aa11.78□□□□□ -0.52
RPSAP39-201ENST00000467439 CUX2O14529 1486 aa11.74□□□□□ -0.53
RPSAP39-201ENST00000467439 ZNF219Q9P2Y4 722 aaPredicted RBP11.73□□□□□ -0.53
RPSAP39-201ENST00000467439 ERCC6Q03468 1493 aa11.69□□□□□ -0.54
RPSAP39-201ENST00000467439 SPDYE4A6NLX3 237 aa11.68□□□□□ -0.54
RPSAP39-201ENST00000467439 HAP1P54257 671 aaPredicted RBP11.66□□□□□ -0.54
RPSAP39-201ENST00000467439 VASPP50552 380 aaPredicted RBP11.63□□□□□ -0.55
RPSAP39-201ENST00000467439 PROM2Q8N271 834 aa11.61□□□□□ -0.55
RPSAP39-201ENST00000467439 NCAPD3P42695 1498 aa11.6□□□□□ -0.55
RPSAP39-201ENST00000467439 MKRN4PQ13434 485 aaPredicted RBP11.57□□□□□ -0.56
RPSAP39-201ENST00000467439 IFNLR1Q8IU57 520 aaPredicted RBP11.57□□□□□ -0.56
RPSAP39-201ENST00000467439 BCANQ96GW7 911 aa11.57□□□□□ -0.56
RPSAP39-201ENST00000467439 ATAD2BQ9ULI0 1458 aa11.53□□□□□ -0.56
RPSAP39-201ENST00000467439 PRKCSHP14314 528 aaPredicted RBP11.53□□□□□ -0.56
RPSAP39-201ENST00000467439 APLP2Q06481 763 aa11.52□□□□□ -0.57
RPSAP39-201ENST00000467439 HMGXB3Q12766 1538 aa11.51□□□□□ -0.57
RPSAP39-201ENST00000467439 SMARCA2P51531 1590 aa11.51□□□□□ -0.57
RPSAP39-201ENST00000467439 NESP48681 1621 aa11.51□□□□□ -0.57
RPSAP39-201ENST00000467439 PKD2Q13563 968 aa11.51□□□□□ -0.57
RPSAP39-201ENST00000467439 VSIG10Q8N0Z9 540 aa11.5□□□□□ -0.57
RPSAP39-201ENST00000467439 SMARCA4P51532 1647 aa11.48□□□□□ -0.57
RPSAP39-201ENST00000467439 TAOK2Q9UL54 1235 aa11.47□□□□□ -0.57
RPSAP39-201ENST00000467439 THOC2Q8NI27 1593 aaKnown RBP11.46□□□□□ -0.57
RPSAP39-201ENST00000467439 BAZ1BQ9UIG0 1483 aaKnown RBP11.43□□□□□ -0.58
RPSAP39-201ENST00000467439 FBLN2P98095 1184 aa11.42□□□□□ -0.58
RPSAP39-201ENST00000467439 LAMC3Q9Y6N6 1575 aa11.41□□□□□ -0.58
RPSAP39-201ENST00000467439 KIF21AQ7Z4S6 1674 aa11.4□□□□□ -0.59
RPSAP39-201ENST00000467439 BAZ1AQ9NRL2 1556 aaPredicted RBP11.38□□□□□ -0.59
RPSAP39-201ENST00000467439 TRIM41Q8WV44 630 aa11.38□□□□□ -0.59
RPSAP39-201ENST00000467439 PEG3Q9GZU2 1588 aa11.36□□□□□ -0.59
RPSAP39-201ENST00000467439 KDM2AQ9Y2K7 1162 aa11.35□□□□□ -0.59
RPSAP39-201ENST00000467439 PDS5BQ9NTI5 1447 aa11.34□□□□□ -0.59
RPSAP39-201ENST00000467439 BBXQ8WY36 941 aaPredicted RBP11.33□□□□□ -0.6
RPSAP39-201ENST00000467439 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.32□□□□□ -0.6
RPSAP39-201ENST00000467439 POLA2Q14181 598 aa11.29□□□□□ -0.6
RPSAP39-201ENST00000467439 TPRNQ4KMQ1 711 aa11.29□□□□□ -0.6
RPSAP39-201ENST00000467439 NPM1P06748 294 aaKnown RBP eCLIP11.28□□□□□ -0.6
RPSAP39-201ENST00000467439 TRHP20396 242 aaPredicted RBP11.27□□□□□ -0.61
RPSAP39-201ENST00000467439 PAXIP1Q6ZW49 1069 aaPredicted RBP11.27□□□□□ -0.61
RPSAP39-201ENST00000467439 MRC2Q9UBG0 1479 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 172.3 ms