RNA–Protein interactions for RNA: ENST00000465980.1

ATG3-203, Transcript of autophagy related 3, humanhuman

TSL 2

Gene ATG3, Length 560 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-203ENST00000465980 AEBP2Q6ZN18 517 aaPredicted RBP31.79■■■□□ 2.68
ATG3-203ENST00000465980 CHIC1Q5VXU3 224 aa30.21■■■□□ 2.43
ATG3-203ENST00000465980 SENP3Q9H4L4 574 aaPredicted RBP27.22■■□□□ 1.95
ATG3-203ENST00000465980 PHF23Q9BUL5 403 aaPredicted RBP26.8■■□□□ 1.88
ATG3-203ENST00000465980 FOXD1Q16676 465 aa25.31■■□□□ 1.64
ATG3-203ENST00000465980 PLPPR3Q6T4P5 718 aa24.14■■□□□ 1.45
ATG3-203ENST00000465980 MSH5O43196 834 aa23.8■■□□□ 1.4
ATG3-203ENST00000465980 PIAS4Q8N2W9 510 aaPredicted RBP23.65■■□□□ 1.38
ATG3-203ENST00000465980 PPP6R1Q9UPN7 881 aa23.57■■□□□ 1.36
ATG3-203ENST00000465980 ADRA2BP18089 450 aa23.49■■□□□ 1.35
ATG3-203ENST00000465980 POTEDQ86YR6 584 aa23.24■■□□□ 1.31
ATG3-203ENST00000465980 NISCHQ9Y2I1 1504 aa23.08■■□□□ 1.28
ATG3-203ENST00000465980 SCAF1Q9H7N4 1312 aaKnown RBP21.63■■□□□ 1.05
ATG3-203ENST00000465980 MAPK8IP2Q13387 824 aaPredicted RBP21.57■■□□□ 1.04
ATG3-203ENST00000465980 DMRT2Q9Y5R5 561 aa21.57■■□□□ 1.04
ATG3-203ENST00000465980 PPP4R3CPQ6ZMV5 832 aa21.1■□□□□ 0.97
ATG3-203ENST00000465980 HOXD11P31277 338 aaPredicted RBP20.77■□□□□ 0.92
ATG3-203ENST00000465980 CNKSR2Q8WXI2 1034 aa20.77■□□□□ 0.92
ATG3-203ENST00000465980 CCDC180Q9P1Z9 1646 aa20.7■□□□□ 0.9
ATG3-203ENST00000465980 RNF216Q9NWF9 866 aaPredicted RBP20.6■□□□□ 0.89
ATG3-203ENST00000465980 DCAF8L1A6NGE4 600 aa20.59■□□□□ 0.89
ATG3-203ENST00000465980 ABCC9O60706 1549 aa20.57■□□□□ 0.88
ATG3-203ENST00000465980 CACNB1Q02641 598 aaPredicted RBP20.38■□□□□ 0.85
ATG3-203ENST00000465980 NCBP3Q53F19 620 aaKnown RBP20.34■□□□□ 0.85
ATG3-203ENST00000465980 RNF39Q9H2S5 420 aa20.26■□□□□ 0.83
ATG3-203ENST00000465980 DNAJC5BQ9UF47 199 aa20.17■□□□□ 0.82
ATG3-203ENST00000465980 C1QBPQ07021 282 aaKnown RBP20■□□□□ 0.79
ATG3-203ENST00000465980 NPM3O75607 178 aaKnown RBP19.98■□□□□ 0.79
ATG3-203ENST00000465980 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.73■□□□□ 0.75
ATG3-203ENST00000465980 RB1CC1Q8TDY2 1594 aa19.61■□□□□ 0.73
ATG3-203ENST00000465980 KCNA4P22459 653 aa19.5■□□□□ 0.71
ATG3-203ENST00000465980 NACADO15069 1562 aa19.48■□□□□ 0.71
ATG3-203ENST00000465980 DCAF8L2P0C7V8 631 aa19.45■□□□□ 0.7
ATG3-203ENST00000465980 U3KPZ7 1027 aaPredicted RBP19.31■□□□□ 0.68
ATG3-203ENST00000465980 UNC13AQ9UPW8 1703 aa19.3■□□□□ 0.68
ATG3-203ENST00000465980 MYO15BQ96JP2 1530 aa19.19■□□□□ 0.66
ATG3-203ENST00000465980 ZCCHC6Q5VYS8 1495 aaKnown RBP19.16■□□□□ 0.66
ATG3-203ENST00000465980 PABPN1Q86U42 306 aaKnown RBP eCLIP19.14■□□□□ 0.65
ATG3-203ENST00000465980 SLC4A2P04920 1241 aa19.07■□□□□ 0.64
ATG3-203ENST00000465980 BICRAQ9NZM4 1560 aa19.04■□□□□ 0.64
ATG3-203ENST00000465980 DCAF1Q9Y4B6 1507 aa19.03■□□□□ 0.64
ATG3-203ENST00000465980 CAPN15O75808 1086 aa19■□□□□ 0.63
ATG3-203ENST00000465980 SPINK5Q9NQ38 1064 aaPredicted RBP19■□□□□ 0.63
ATG3-203ENST00000465980 DSG3P32926 999 aa18.94■□□□□ 0.62
ATG3-203ENST00000465980 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
ATG3-203ENST00000465980 APLP2Q06481 763 aa18.9■□□□□ 0.62
ATG3-203ENST00000465980 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.84■□□□□ 0.61
ATG3-203ENST00000465980 HNRNPUL2Q1KMD3 747 aaKnown RBP18.84■□□□□ 0.61
ATG3-203ENST00000465980 ZNF219Q9P2Y4 722 aaPredicted RBP18.74■□□□□ 0.59
ATG3-203ENST00000465980 SHROOM4Q9ULL8 1493 aa18.71■□□□□ 0.59
ATG3-203ENST00000465980 SAMD1Q6SPF0 538 aaPredicted RBP18.71■□□□□ 0.59
ATG3-203ENST00000465980 TRHP20396 242 aaPredicted RBP18.67■□□□□ 0.58
ATG3-203ENST00000465980 CC2D2AQ9P2K1 1620 aa18.59■□□□□ 0.57
ATG3-203ENST00000465980 EIF4G1Q04637 1599 aaKnown RBP18.56■□□□□ 0.56
ATG3-203ENST00000465980 MYCNP04198 464 aaPredicted RBP18.54■□□□□ 0.56
ATG3-203ENST00000465980 ABCB7O75027 752 aa18.52■□□□□ 0.56
ATG3-203ENST00000465980 CECR2Q9BXF3 1484 aa18.47■□□□□ 0.55
ATG3-203ENST00000465980 SLC4A1APQ9BWU0 796 aaKnown RBP18.43■□□□□ 0.54
ATG3-203ENST00000465980 FOXD4L1Q9NU39 408 aa18.29■□□□□ 0.52
ATG3-203ENST00000465980 POTEHQ6S545 545 aa18.22■□□□□ 0.51
ATG3-203ENST00000465980 POLA2Q14181 598 aa18.17■□□□□ 0.5
ATG3-203ENST00000465980 RBM42Q9BTD8 480 aaKnown RBP18.15■□□□□ 0.5
ATG3-203ENST00000465980 SMARCA4P51532 1647 aa18.02■□□□□ 0.48
ATG3-203ENST00000465980 ATF5Q9Y2D1 282 aaPredicted RBP18■□□□□ 0.47
ATG3-203ENST00000465980 ATAD2BQ9ULI0 1458 aa17.95■□□□□ 0.46
ATG3-203ENST00000465980 NCAPD3P42695 1498 aa17.94■□□□□ 0.46
ATG3-203ENST00000465980 SMARCA2P51531 1590 aa17.92■□□□□ 0.46
ATG3-203ENST00000465980 ZBTB12Q9Y330 459 aaPredicted RBP17.92■□□□□ 0.46
ATG3-203ENST00000465980 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
ATG3-203ENST00000465980 ZBTB22O15209 634 aa17.91■□□□□ 0.46
ATG3-203ENST00000465980 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
ATG3-203ENST00000465980 BAZ1BQ9UIG0 1483 aaKnown RBP17.82■□□□□ 0.44
ATG3-203ENST00000465980 MROH2BQ7Z745 1585 aa17.81■□□□□ 0.44
ATG3-203ENST00000465980 ATXN8OSP0DMR3 200 aa17.8■□□□□ 0.44
ATG3-203ENST00000465980 PEG3Q9GZU2 1588 aa17.79■□□□□ 0.44
ATG3-203ENST00000465980 ERCC6Q03468 1493 aa17.75■□□□□ 0.43
ATG3-203ENST00000465980 NESP48681 1621 aa17.71■□□□□ 0.43
ATG3-203ENST00000465980 AKT1S1Q96B36 256 aa17.7■□□□□ 0.42
ATG3-203ENST00000465980 CHRDL2Q6WN34 429 aa17.69■□□□□ 0.42
ATG3-203ENST00000465980 WIZO95785 1651 aa17.66■□□□□ 0.42
ATG3-203ENST00000465980 CUX2O14529 1486 aa17.6■□□□□ 0.41
ATG3-203ENST00000465980 OSCARQ8IYS5 282 aa17.59■□□□□ 0.41
ATG3-203ENST00000465980 LAMC3Q9Y6N6 1575 aa17.57■□□□□ 0.4
ATG3-203ENST00000465980 KIF21AQ7Z4S6 1674 aa17.56■□□□□ 0.4
ATG3-203ENST00000465980 THOC2Q8NI27 1593 aaKnown RBP17.51■□□□□ 0.39
ATG3-203ENST00000465980 REM2Q8IYK8 340 aaPredicted RBP17.47■□□□□ 0.39
ATG3-203ENST00000465980 RSF1Q96T23 1441 aaPredicted RBP17.46■□□□□ 0.39
ATG3-203ENST00000465980 PDS5BQ9NTI5 1447 aa17.43■□□□□ 0.38
ATG3-203ENST00000465980 CADPSQ9ULU8 1353 aa17.4■□□□□ 0.38
ATG3-203ENST00000465980 FBLN2P98095 1184 aa17.4■□□□□ 0.38
ATG3-203ENST00000465980 DNAJC5Q9H3Z4 198 aa17.4■□□□□ 0.38
ATG3-203ENST00000465980 TOP2AP11388 1531 aaKnown RBP17.39■□□□□ 0.37
ATG3-203ENST00000465980 SPDYE2BA6NHP3 402 aa17.32■□□□□ 0.36
ATG3-203ENST00000465980 SPDYE6P0CI01 402 aa17.32■□□□□ 0.36
ATG3-203ENST00000465980 SPDYE2Q495Y8 402 aa17.32■□□□□ 0.36
ATG3-203ENST00000465980 MRC2Q9UBG0 1479 aa17.31■□□□□ 0.36
ATG3-203ENST00000465980 PITPNM1O00562 1244 aa17.28■□□□□ 0.36
ATG3-203ENST00000465980 CEP164Q9UPV0 1460 aa17.28■□□□□ 0.36
ATG3-203ENST00000465980 FANCD2Q9BXW9 1451 aa17.27■□□□□ 0.36
ATG3-203ENST00000465980 WDR62O43379 1518 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms