RNA–Protein interactions for RNA: ENST00000464437.1

RPGR-204, Transcript of retinitis pigmentosa GTPase regulator, humanhuman

TSL 3

Gene RPGR, Length 428 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPGR-204ENST00000464437 AEBP2Q6ZN18 517 aaPredicted RBP22.25■■□□□ 1.15
RPGR-204ENST00000464437 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
RPGR-204ENST00000464437 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
RPGR-204ENST00000464437 PHF23Q9BUL5 403 aaPredicted RBP18.7■□□□□ 0.58
RPGR-204ENST00000464437 FOXD1Q16676 465 aa17.79■□□□□ 0.44
RPGR-204ENST00000464437 POTEDQ86YR6 584 aa17.22■□□□□ 0.35
RPGR-204ENST00000464437 MSH5O43196 834 aa16.77■□□□□ 0.28
RPGR-204ENST00000464437 PIAS4Q8N2W9 510 aaPredicted RBP16.53■□□□□ 0.24
RPGR-204ENST00000464437 PPP6R1Q9UPN7 881 aa16.31■□□□□ 0.2
RPGR-204ENST00000464437 PLPPR3Q6T4P5 718 aa16.26■□□□□ 0.19
RPGR-204ENST00000464437 ADRA2BP18089 450 aa16.25■□□□□ 0.19
RPGR-204ENST00000464437 NISCHQ9Y2I1 1504 aa15.99■□□□□ 0.15
RPGR-204ENST00000464437 MAPK8IP2Q13387 824 aaPredicted RBP15.07■□□□□ 0
RPGR-204ENST00000464437 DMRT2Q9Y5R5 561 aa14.98□□□□□ -0.01
RPGR-204ENST00000464437 SCAF1Q9H7N4 1312 aaKnown RBP14.76□□□□□ -0.05
RPGR-204ENST00000464437 CACNB1Q02641 598 aaPredicted RBP14.74□□□□□ -0.05
RPGR-204ENST00000464437 DCAF8L1A6NGE4 600 aa14.49□□□□□ -0.09
RPGR-204ENST00000464437 RNF39Q9H2S5 420 aa14.3□□□□□ -0.12
RPGR-204ENST00000464437 CCDC180Q9P1Z9 1646 aa14.24□□□□□ -0.13
RPGR-204ENST00000464437 HOXD11P31277 338 aaPredicted RBP14.23□□□□□ -0.13
RPGR-204ENST00000464437 PPP4R3CPQ6ZMV5 832 aa14.22□□□□□ -0.13
RPGR-204ENST00000464437 CNKSR2Q8WXI2 1034 aa14.03□□□□□ -0.16
RPGR-204ENST00000464437 C1QBPQ07021 282 aaKnown RBP14.02□□□□□ -0.17
RPGR-204ENST00000464437 RNF216Q9NWF9 866 aaPredicted RBP14.01□□□□□ -0.17
RPGR-204ENST00000464437 ABCC9O60706 1549 aa13.98□□□□□ -0.17
RPGR-204ENST00000464437 DNAJC5BQ9UF47 199 aa13.75□□□□□ -0.21
RPGR-204ENST00000464437 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.62□□□□□ -0.23
RPGR-204ENST00000464437 NCBP3Q53F19 620 aaKnown RBP13.49□□□□□ -0.25
RPGR-204ENST00000464437 RB1CC1Q8TDY2 1594 aa13.43□□□□□ -0.26
RPGR-204ENST00000464437 POTEHQ6S545 545 aa13.4□□□□□ -0.26
RPGR-204ENST00000464437 DCAF8L2P0C7V8 631 aa13.39□□□□□ -0.27
RPGR-204ENST00000464437 NACADO15069 1562 aa13.39□□□□□ -0.27
RPGR-204ENST00000464437 NPM3O75607 178 aaKnown RBP13.35□□□□□ -0.27
RPGR-204ENST00000464437 ZCCHC6Q5VYS8 1495 aaKnown RBP13.32□□□□□ -0.28
RPGR-204ENST00000464437 MYO15BQ96JP2 1530 aa13.29□□□□□ -0.28
RPGR-204ENST00000464437 U3KPZ7 1027 aaPredicted RBP13.27□□□□□ -0.29
RPGR-204ENST00000464437 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
RPGR-204ENST00000464437 CAPN15O75808 1086 aa13.25□□□□□ -0.29
RPGR-204ENST00000464437 DSG3P32926 999 aa13.25□□□□□ -0.29
RPGR-204ENST00000464437 DCAF1Q9Y4B6 1507 aa13.22□□□□□ -0.29
RPGR-204ENST00000464437 UNC13AQ9UPW8 1703 aa13.1□□□□□ -0.31
RPGR-204ENST00000464437 PABPN1Q86U42 306 aaKnown RBP eCLIP13.04□□□□□ -0.32
RPGR-204ENST00000464437 SCRIBQ14160 1630 aa13.01□□□□□ -0.33
RPGR-204ENST00000464437 BICRAQ9NZM4 1560 aa12.99□□□□□ -0.33
RPGR-204ENST00000464437 ABCB7O75027 752 aa12.94□□□□□ -0.34
RPGR-204ENST00000464437 TRHP20396 242 aaPredicted RBP12.93□□□□□ -0.34
RPGR-204ENST00000464437 SHROOM4Q9ULL8 1493 aa12.88□□□□□ -0.35
RPGR-204ENST00000464437 SLC4A2P04920 1241 aa12.87□□□□□ -0.35
RPGR-204ENST00000464437 ZNF219Q9P2Y4 722 aaPredicted RBP12.82□□□□□ -0.36
RPGR-204ENST00000464437 APLP2Q06481 763 aa12.77□□□□□ -0.37
RPGR-204ENST00000464437 KCNA4P22459 653 aa12.71□□□□□ -0.37
RPGR-204ENST00000464437 EIF4G1Q04637 1599 aaKnown RBP12.68□□□□□ -0.38
RPGR-204ENST00000464437 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.66□□□□□ -0.38
RPGR-204ENST00000464437 HNRNPUL2Q1KMD3 747 aaKnown RBP12.66□□□□□ -0.38
RPGR-204ENST00000464437 CC2D2AQ9P2K1 1620 aa12.63□□□□□ -0.39
RPGR-204ENST00000464437 SAMD1Q6SPF0 538 aaPredicted RBP12.6□□□□□ -0.39
RPGR-204ENST00000464437 RBM42Q9BTD8 480 aaKnown RBP12.6□□□□□ -0.39
RPGR-204ENST00000464437 CHRDL2Q6WN34 429 aa12.56□□□□□ -0.4
RPGR-204ENST00000464437 CECR2Q9BXF3 1484 aa12.56□□□□□ -0.4
RPGR-204ENST00000464437 POLA2Q14181 598 aa12.45□□□□□ -0.42
RPGR-204ENST00000464437 SMARCA4P51532 1647 aa12.42□□□□□ -0.42
RPGR-204ENST00000464437 BAZ1AQ9NRL2 1556 aaPredicted RBP12.41□□□□□ -0.42
RPGR-204ENST00000464437 SMARCA2P51531 1590 aa12.35□□□□□ -0.43
RPGR-204ENST00000464437 ATAD2BQ9ULI0 1458 aa12.35□□□□□ -0.43
RPGR-204ENST00000464437 NCAPD3P42695 1498 aa12.34□□□□□ -0.43
RPGR-204ENST00000464437 SP7Q8TDD2 431 aaPredicted RBP12.33□□□□□ -0.44
RPGR-204ENST00000464437 MROH2BQ7Z745 1585 aa12.32□□□□□ -0.44
RPGR-204ENST00000464437 MYCNP04198 464 aaPredicted RBP12.32□□□□□ -0.44
RPGR-204ENST00000464437 HMGXB3Q12766 1538 aa12.3□□□□□ -0.44
RPGR-204ENST00000464437 PEG3Q9GZU2 1588 aa12.29□□□□□ -0.44
RPGR-204ENST00000464437 BAZ1BQ9UIG0 1483 aaKnown RBP12.27□□□□□ -0.44
RPGR-204ENST00000464437 AKT1S1Q96B36 256 aa12.23□□□□□ -0.45
RPGR-204ENST00000464437 WIZO95785 1651 aa12.19□□□□□ -0.46
RPGR-204ENST00000464437 PIP4P2Q8N4L2 257 aa12.18□□□□□ -0.46
RPGR-204ENST00000464437 RSF1Q96T23 1441 aaPredicted RBP12.16□□□□□ -0.46
RPGR-204ENST00000464437 REM2Q8IYK8 340 aaPredicted RBP12.15□□□□□ -0.46
RPGR-204ENST00000464437 ATF5Q9Y2D1 282 aaPredicted RBP12.15□□□□□ -0.46
RPGR-204ENST00000464437 OSCARQ8IYS5 282 aa12.11□□□□□ -0.47
RPGR-204ENST00000464437 HAX1O00165 279 aa12.09□□□□□ -0.47
RPGR-204ENST00000464437 ZBTB12Q9Y330 459 aaPredicted RBP12.09□□□□□ -0.47
RPGR-204ENST00000464437 NESP48681 1621 aa12.08□□□□□ -0.48
RPGR-204ENST00000464437 TOP2AP11388 1531 aaKnown RBP12.07□□□□□ -0.48
RPGR-204ENST00000464437 ERCC6Q03468 1493 aa12.07□□□□□ -0.48
RPGR-204ENST00000464437 PITPNM1O00562 1244 aa12.05□□□□□ -0.48
RPGR-204ENST00000464437 LAMC3Q9Y6N6 1575 aa12.05□□□□□ -0.48
RPGR-204ENST00000464437 FXR2P51116 673 aaKnown RBP eCLIP11.99□□□□□ -0.49
RPGR-204ENST00000464437 CADPSQ9ULU8 1353 aa11.99□□□□□ -0.49
RPGR-204ENST00000464437 PDS5BQ9NTI5 1447 aa11.96□□□□□ -0.49
RPGR-204ENST00000464437 FOXD4L1Q9NU39 408 aa11.96□□□□□ -0.49
RPGR-204ENST00000464437 KIF21AQ7Z4S6 1674 aa11.94□□□□□ -0.5
RPGR-204ENST00000464437 EVX2Q03828 476 aa11.93□□□□□ -0.5
RPGR-204ENST00000464437 CUX2O14529 1486 aa11.93□□□□□ -0.5
RPGR-204ENST00000464437 CCDC88BA6NC98 1476 aa11.91□□□□□ -0.5
RPGR-204ENST00000464437 CFTRP13569 1480 aa11.91□□□□□ -0.5
RPGR-204ENST00000464437 THOC2Q8NI27 1593 aaKnown RBP11.91□□□□□ -0.5
RPGR-204ENST00000464437 SLC4A1APQ9BWU0 796 aaKnown RBP11.89□□□□□ -0.51
RPGR-204ENST00000464437 FANCD2Q9BXW9 1451 aa11.87□□□□□ -0.51
RPGR-204ENST00000464437 CEP164Q9UPV0 1460 aa11.87□□□□□ -0.51
RPGR-204ENST00000464437 MRC2Q9UBG0 1479 aa11.85□□□□□ -0.51
RPGR-204ENST00000464437 SUPT5HO00267 1087 aaKnown RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms