RNA–Protein interactions for RNA: ENST00000462604.1

COL8A1-204, Transcript of collagen type VIII alpha 1 chain, humanhuman

TSL 3

Gene COL8A1, Length 190 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-204ENST00000462604 NISCHQ9Y2I1 1504 aa7.01□□□□□ -1.29
COL8A1-204ENST00000462604 CHIC1Q5VXU3 224 aa6.37□□□□□ -1.39
COL8A1-204ENST00000462604 AEBP2Q6ZN18 517 aaPredicted RBP6.04□□□□□ -1.44
COL8A1-204ENST00000462604 SHROOM4Q9ULL8 1493 aa6.02□□□□□ -1.45
COL8A1-204ENST00000462604 ZCCHC6Q5VYS8 1495 aaKnown RBP5.96□□□□□ -1.45
COL8A1-204ENST00000462604 SUPT5HO00267 1087 aaKnown RBP5.94□□□□□ -1.46
COL8A1-204ENST00000462604 CCDC180Q9P1Z9 1646 aa5.91□□□□□ -1.46
COL8A1-204ENST00000462604 SLC24A1O60721 1099 aa5.83□□□□□ -1.48
COL8A1-204ENST00000462604 HRCP23327 699 aa5.81□□□□□ -1.48
COL8A1-204ENST00000462604 DCAF1Q9Y4B6 1507 aa5.79□□□□□ -1.48
COL8A1-204ENST00000462604 MYO15BQ96JP2 1530 aa5.79□□□□□ -1.48
COL8A1-204ENST00000462604 DCAF8L2P0C7V8 631 aa5.77□□□□□ -1.49
COL8A1-204ENST00000462604 PHF23Q9BUL5 403 aaPredicted RBP5.76□□□□□ -1.49
COL8A1-204ENST00000462604 PCGF6Q9BYE7 350 aa5.71□□□□□ -1.5
COL8A1-204ENST00000462604 ABCC9O60706 1549 aa5.64□□□□□ -1.51
COL8A1-204ENST00000462604 TRIM26Q12899 539 aaPredicted RBP5.63□□□□□ -1.51
COL8A1-204ENST00000462604 EHMT2Q96KQ7 1210 aa5.63□□□□□ -1.51
COL8A1-204ENST00000462604 LOC105371045A0A1W2PR82 267 aa5.61□□□□□ -1.51
COL8A1-204ENST00000462604 ZEB1P37275 1124 aaPredicted RBP5.6□□□□□ -1.51
COL8A1-204ENST00000462604 PPARGC1BQ86YN6 1023 aaKnown RBP5.6□□□□□ -1.51
COL8A1-204ENST00000462604 RSF1Q96T23 1441 aaPredicted RBP5.58□□□□□ -1.52
COL8A1-204ENST00000462604 TRIM41Q8WV44 630 aa5.56□□□□□ -1.52
COL8A1-204ENST00000462604 SCRIBQ14160 1630 aa5.55□□□□□ -1.52
COL8A1-204ENST00000462604 RB1CC1Q8TDY2 1594 aa5.54□□□□□ -1.52
COL8A1-204ENST00000462604 PLPPR3Q6T4P5 718 aa5.49□□□□□ -1.53
COL8A1-204ENST00000462604 NACADO15069 1562 aa5.48□□□□□ -1.53
COL8A1-204ENST00000462604 FAM9AQ8IZU1 332 aaPredicted RBP5.48□□□□□ -1.53
COL8A1-204ENST00000462604 PELP1Q8IZL8 1130 aaKnown RBP5.47□□□□□ -1.53
COL8A1-204ENST00000462604 CSRNP3Q8WYN3 585 aa5.45□□□□□ -1.54
COL8A1-204ENST00000462604 MROH2BQ7Z745 1585 aa5.43□□□□□ -1.54
COL8A1-204ENST00000462604 CECR2Q9BXF3 1484 aa5.43□□□□□ -1.54
COL8A1-204ENST00000462604 RTN4Q9NQC3 1192 aaKnown RBP5.41□□□□□ -1.54
COL8A1-204ENST00000462604 BAZ1AQ9NRL2 1556 aaPredicted RBP5.41□□□□□ -1.54
COL8A1-204ENST00000462604 KCNA4P22459 653 aa5.39□□□□□ -1.55
COL8A1-204ENST00000462604 CCER1Q8TC90 406 aaPredicted RBP5.38□□□□□ -1.55
COL8A1-204ENST00000462604 WRNQ14191 1432 aaPredicted RBP eCLIP5.38□□□□□ -1.55
COL8A1-204ENST00000462604 EEA1Q15075 1411 aa5.37□□□□□ -1.55
COL8A1-204ENST00000462604 TOP2AP11388 1531 aaKnown RBP5.37□□□□□ -1.55
COL8A1-204ENST00000462604 EIF4G1Q04637 1599 aaKnown RBP5.37□□□□□ -1.55
COL8A1-204ENST00000462604 SCAF1Q9H7N4 1312 aaKnown RBP5.36□□□□□ -1.55
COL8A1-204ENST00000462604 WIZO95785 1651 aa5.36□□□□□ -1.55
COL8A1-204ENST00000462604 CEP162Q5TB80 1403 aa5.34□□□□□ -1.55
COL8A1-204ENST00000462604 TNIKQ9UKE5 1360 aa5.34□□□□□ -1.55
COL8A1-204ENST00000462604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.34□□□□□ -1.55
COL8A1-204ENST00000462604 CENPBP07199 599 aaPredicted RBP5.34□□□□□ -1.55
COL8A1-204ENST00000462604 ACIN1Q9UKV3 1341 aaKnown RBP5.32□□□□□ -1.56
COL8A1-204ENST00000462604 CCDC88BA6NC98 1476 aa5.32□□□□□ -1.56
COL8A1-204ENST00000462604 DIEXFQ68CQ4 756 aaKnown RBP5.31□□□□□ -1.56
COL8A1-204ENST00000462604 GOLGA3Q08378 1498 aa5.31□□□□□ -1.56
COL8A1-204ENST00000462604 SMARCA4P51532 1647 aa5.3□□□□□ -1.56
COL8A1-204ENST00000462604 SMARCA2P51531 1590 aa5.3□□□□□ -1.56
COL8A1-204ENST00000462604 AMER1Q5JTC6 1135 aaPredicted RBP5.3□□□□□ -1.56
COL8A1-204ENST00000462604 UBTFP17480 764 aaKnown RBP5.29□□□□□ -1.56
COL8A1-204ENST00000462604 NCBP3Q53F19 620 aaKnown RBP5.29□□□□□ -1.56
COL8A1-204ENST00000462604 SOGA1O94964 1423 aa5.29□□□□□ -1.56
COL8A1-204ENST00000462604 ABCC8Q09428 1581 aa5.29□□□□□ -1.56
COL8A1-204ENST00000462604 TTBK1Q5TCY1 1321 aaPredicted RBP5.27□□□□□ -1.57
COL8A1-204ENST00000462604 CEP164Q9UPV0 1460 aa5.27□□□□□ -1.57
COL8A1-204ENST00000462604 NEUROD1Q13562 356 aa5.27□□□□□ -1.57
COL8A1-204ENST00000462604 ZNF316A6NFI3 1004 aaPredicted RBP5.26□□□□□ -1.57
COL8A1-204ENST00000462604 MYT1Q01538 1121 aa5.25□□□□□ -1.57
COL8A1-204ENST00000462604 GTF3C3Q9Y5Q9 886 aa5.24□□□□□ -1.57
COL8A1-204ENST00000462604 CLIP1P30622 1438 aa5.23□□□□□ -1.57
COL8A1-204ENST00000462604 APLP2Q06481 763 aa5.23□□□□□ -1.57
COL8A1-204ENST00000462604 BAZ1BQ9UIG0 1483 aaKnown RBP5.23□□□□□ -1.57
COL8A1-204ENST00000462604 VPS8Q8N3P4 1428 aa5.23□□□□□ -1.57
COL8A1-204ENST00000462604 KIF21BO75037 1637 aa5.22□□□□□ -1.57
COL8A1-204ENST00000462604 RUSC2Q8N2Y8 1516 aa5.22□□□□□ -1.57
COL8A1-204ENST00000462604 PEG3Q9GZU2 1588 aa5.21□□□□□ -1.57
COL8A1-204ENST00000462604 HNRNPUL2Q1KMD3 747 aaKnown RBP5.2□□□□□ -1.58
COL8A1-204ENST00000462604 PABPN1Q86U42 306 aaKnown RBP eCLIP5.19□□□□□ -1.58
COL8A1-204ENST00000462604 SYNJ1O43426 1573 aa5.18□□□□□ -1.58
COL8A1-204ENST00000462604 ATAD2BQ9ULI0 1458 aa5.18□□□□□ -1.58
COL8A1-204ENST00000462604 CLSPNQ9HAW4 1339 aa5.18□□□□□ -1.58
COL8A1-204ENST00000462604 YTHDC1Q96MU7 727 aaKnown RBP5.17□□□□□ -1.58
COL8A1-204ENST00000462604 BICRAQ9NZM4 1560 aa5.16□□□□□ -1.58
COL8A1-204ENST00000462604 RAPGEF2Q9Y4G8 1499 aa5.16□□□□□ -1.58
COL8A1-204ENST00000462604 MIER1Q8N108 512 aa5.15□□□□□ -1.59
COL8A1-204ENST00000462604 SLC4A1APQ9BWU0 796 aaKnown RBP5.15□□□□□ -1.59
COL8A1-204ENST00000462604 DAXXQ9UER7 740 aaPredicted RBP5.15□□□□□ -1.59
COL8A1-204ENST00000462604 ERICH3Q5RHP9 1530 aa5.14□□□□□ -1.59
COL8A1-204ENST00000462604 TOP2BQ02880 1626 aa5.13□□□□□ -1.59
COL8A1-204ENST00000462604 ARAP1Q96P48 1450 aa5.13□□□□□ -1.59
COL8A1-204ENST00000462604 PRXQ9BXM0 1461 aa5.13□□□□□ -1.59
COL8A1-204ENST00000462604 ADRA2BP18089 450 aa5.12□□□□□ -1.59
COL8A1-204ENST00000462604 RANGAP1P46060 587 aaPredicted RBP5.12□□□□□ -1.59
COL8A1-204ENST00000462604 DHX57Q6P158 1386 aaKnown RBP5.12□□□□□ -1.59
COL8A1-204ENST00000462604 KIF27Q86VH2 1401 aa5.11□□□□□ -1.59
COL8A1-204ENST00000462604 CUX2O14529 1486 aa5.1□□□□□ -1.59
COL8A1-204ENST00000462604 PRKCSHP14314 528 aaPredicted RBP5.1□□□□□ -1.59
COL8A1-204ENST00000462604 RRBP1Q9P2E9 1410 aaKnown RBP5.1□□□□□ -1.59
COL8A1-204ENST00000462604 UNC13AQ9UPW8 1703 aa5.1□□□□□ -1.59
COL8A1-204ENST00000462604 BIVM-ERCC5R4GMW8 1640 aa5.09□□□□□ -1.59
COL8A1-204ENST00000462604 CCNB3Q8WWL7 1395 aa5.09□□□□□ -1.59
COL8A1-204ENST00000462604 HMGXB3Q12766 1538 aa5.08□□□□□ -1.6
COL8A1-204ENST00000462604 NCAPD3P42695 1498 aa5.07□□□□□ -1.6
COL8A1-204ENST00000462604 KANK4Q5T7N3 995 aaPredicted RBP5.07□□□□□ -1.6
COL8A1-204ENST00000462604 CUX1P39880 1505 aa5.07□□□□□ -1.6
COL8A1-204ENST00000462604 CFTRP13569 1480 aa5.06□□□□□ -1.6
COL8A1-204ENST00000462604 MAP3K1Q13233 1512 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms