RNA–Protein interactions for RNA: ENST00000454035.5

MDH1-208, Transcript of malate dehydrogenase 1, humanhuman

TSL 3

Gene MDH1, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDH1-208ENST00000454035 AEBP2Q6ZN18 517 aaPredicted RBP17.97■□□□□ 0.47
MDH1-208ENST00000454035 CHIC1Q5VXU3 224 aa16.8■□□□□ 0.28
MDH1-208ENST00000454035 SENP3Q9H4L4 574 aaPredicted RBP15.49■□□□□ 0.07
MDH1-208ENST00000454035 PHF23Q9BUL5 403 aaPredicted RBP15.17■□□□□ 0.02
MDH1-208ENST00000454035 POTEDQ86YR6 584 aa15.07■□□□□ 0
MDH1-208ENST00000454035 FOXD1Q16676 465 aa14.54□□□□□ -0.08
MDH1-208ENST00000454035 NISCHQ9Y2I1 1504 aa14.29□□□□□ -0.12
MDH1-208ENST00000454035 MSH5O43196 834 aa13.94□□□□□ -0.18
MDH1-208ENST00000454035 PLPPR3Q6T4P5 718 aa13.59□□□□□ -0.23
MDH1-208ENST00000454035 PIAS4Q8N2W9 510 aaPredicted RBP13.38□□□□□ -0.27
MDH1-208ENST00000454035 PPP6R1Q9UPN7 881 aa12.94□□□□□ -0.34
MDH1-208ENST00000454035 ADRA2BP18089 450 aa12.85□□□□□ -0.35
MDH1-208ENST00000454035 CCDC180Q9P1Z9 1646 aa12.66□□□□□ -0.38
MDH1-208ENST00000454035 ABCC9O60706 1549 aa12.64□□□□□ -0.39
MDH1-208ENST00000454035 KCNA4P22459 653 aa12.53□□□□□ -0.4
MDH1-208ENST00000454035 CACNB1Q02641 598 aaPredicted RBP12.52□□□□□ -0.41
MDH1-208ENST00000454035 EHMT2Q96KQ7 1210 aa12.44□□□□□ -0.42
MDH1-208ENST00000454035 DMRT2Q9Y5R5 561 aa12.13□□□□□ -0.47
MDH1-208ENST00000454035 PPP4R3CPQ6ZMV5 832 aa12.09□□□□□ -0.47
MDH1-208ENST00000454035 DNAJC5BQ9UF47 199 aa12.09□□□□□ -0.47
MDH1-208ENST00000454035 MAPK8IP2Q13387 824 aaPredicted RBP12.07□□□□□ -0.48
MDH1-208ENST00000454035 SLC4A1APQ9BWU0 796 aaKnown RBP12.02□□□□□ -0.49
MDH1-208ENST00000454035 CSRNP3Q8WYN3 585 aa11.99□□□□□ -0.49
MDH1-208ENST00000454035 NACADO15069 1562 aa11.93□□□□□ -0.5
MDH1-208ENST00000454035 RB1CC1Q8TDY2 1594 aa11.92□□□□□ -0.5
MDH1-208ENST00000454035 DCAF8L2P0C7V8 631 aa11.91□□□□□ -0.5
MDH1-208ENST00000454035 NCBP3Q53F19 620 aaKnown RBP11.9□□□□□ -0.5
MDH1-208ENST00000454035 MYO15BQ96JP2 1530 aa11.9□□□□□ -0.5
MDH1-208ENST00000454035 ZCCHC6Q5VYS8 1495 aaKnown RBP11.89□□□□□ -0.51
MDH1-208ENST00000454035 DCAF1Q9Y4B6 1507 aa11.84□□□□□ -0.51
MDH1-208ENST00000454035 RNF39Q9H2S5 420 aa11.81□□□□□ -0.52
MDH1-208ENST00000454035 UNC13AQ9UPW8 1703 aa11.79□□□□□ -0.52
MDH1-208ENST00000454035 NPM3O75607 178 aaKnown RBP11.78□□□□□ -0.52
MDH1-208ENST00000454035 SCAF1Q9H7N4 1312 aaKnown RBP11.78□□□□□ -0.52
MDH1-208ENST00000454035 DCAF8L1A6NGE4 600 aa11.73□□□□□ -0.53
MDH1-208ENST00000454035 PABPN1Q86U42 306 aaKnown RBP eCLIP11.71□□□□□ -0.53
MDH1-208ENST00000454035 POTEHQ6S545 545 aa11.64□□□□□ -0.55
MDH1-208ENST00000454035 C1QBPQ07021 282 aaKnown RBP11.6□□□□□ -0.55
MDH1-208ENST00000454035 BICRAQ9NZM4 1560 aa11.59□□□□□ -0.55
MDH1-208ENST00000454035 CNKSR2Q8WXI2 1034 aa11.58□□□□□ -0.56
MDH1-208ENST00000454035 ZBTB22O15209 634 aa11.56□□□□□ -0.56
MDH1-208ENST00000454035 SCRIBQ14160 1630 aa11.53□□□□□ -0.56
MDH1-208ENST00000454035 SHROOM4Q9ULL8 1493 aa11.47□□□□□ -0.57
MDH1-208ENST00000454035 CC2D2AQ9P2K1 1620 aa11.42□□□□□ -0.58
MDH1-208ENST00000454035 CECR2Q9BXF3 1484 aa11.38□□□□□ -0.59
MDH1-208ENST00000454035 HOXD11P31277 338 aaPredicted RBP11.35□□□□□ -0.59
MDH1-208ENST00000454035 FOXD4L1Q9NU39 408 aa11.3□□□□□ -0.6
MDH1-208ENST00000454035 EIF4G1Q04637 1599 aaKnown RBP11.28□□□□□ -0.6
MDH1-208ENST00000454035 DNAJC5Q9H3Z4 198 aa11.24□□□□□ -0.61
MDH1-208ENST00000454035 RNF216Q9NWF9 866 aaPredicted RBP11.2□□□□□ -0.62
MDH1-208ENST00000454035 SMARCA4P51532 1647 aa11.06□□□□□ -0.64
MDH1-208ENST00000454035 BAZ1AQ9NRL2 1556 aaPredicted RBP11.05□□□□□ -0.64
MDH1-208ENST00000454035 NCAPD3P42695 1498 aa11.05□□□□□ -0.64
MDH1-208ENST00000454035 ATAD2BQ9ULI0 1458 aa11.03□□□□□ -0.64
MDH1-208ENST00000454035 MROH2BQ7Z745 1585 aa11□□□□□ -0.65
MDH1-208ENST00000454035 SMARCA2P51531 1590 aa10.99□□□□□ -0.65
MDH1-208ENST00000454035 PEG3Q9GZU2 1588 aa10.99□□□□□ -0.65
MDH1-208ENST00000454035 SLC4A2P04920 1241 aa10.98□□□□□ -0.65
MDH1-208ENST00000454035 HMGXB3Q12766 1538 aa10.95□□□□□ -0.66
MDH1-208ENST00000454035 RTN4Q9NQC3 1192 aaKnown RBP10.94□□□□□ -0.66
MDH1-208ENST00000454035 CUX2O14529 1486 aa10.93□□□□□ -0.66
MDH1-208ENST00000454035 ERCC6Q03468 1493 aa10.91□□□□□ -0.66
MDH1-208ENST00000454035 BAZ1BQ9UIG0 1483 aaKnown RBP10.91□□□□□ -0.66
MDH1-208ENST00000454035 RSF1Q96T23 1441 aaPredicted RBP10.9□□□□□ -0.66
MDH1-208ENST00000454035 AMER1Q5JTC6 1135 aaPredicted RBP10.86□□□□□ -0.67
MDH1-208ENST00000454035 WIZO95785 1651 aa10.85□□□□□ -0.67
MDH1-208ENST00000454035 SLC24A1O60721 1099 aa10.85□□□□□ -0.67
MDH1-208ENST00000454035 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.85□□□□□ -0.673e-11■■□□□ 13.1
MDH1-208ENST00000454035 MYCNP04198 464 aaPredicted RBP10.82□□□□□ -0.68
MDH1-208ENST00000454035 ATXN8OSP0DMR3 200 aa10.82□□□□□ -0.68
MDH1-208ENST00000454035 NESP48681 1621 aa10.8□□□□□ -0.68
MDH1-208ENST00000454035 FKBP8Q14318 412 aa10.79□□□□□ -0.68
MDH1-208ENST00000454035 DSG3P32926 999 aa10.76□□□□□ -0.69
MDH1-208ENST00000454035 TOP2AP11388 1531 aaKnown RBP10.75□□□□□ -0.69
MDH1-208ENST00000454035 THOC2Q8NI27 1593 aaKnown RBP10.74□□□□□ -0.69
MDH1-208ENST00000454035 TRIM41Q8WV44 630 aa10.74□□□□□ -0.69
MDH1-208ENST00000454035 KIF21AQ7Z4S6 1674 aa10.73□□□□□ -0.69
MDH1-208ENST00000454035 CADPSQ9ULU8 1353 aa10.72□□□□□ -0.69
MDH1-208ENST00000454035 LAMC3Q9Y6N6 1575 aa10.71□□□□□ -0.69
MDH1-208ENST00000454035 CCDC88BA6NC98 1476 aa10.66□□□□□ -0.7
MDH1-208ENST00000454035 PDS5BQ9NTI5 1447 aa10.66□□□□□ -0.7
MDH1-208ENST00000454035 CAPN15O75808 1086 aa10.65□□□□□ -0.7
MDH1-208ENST00000454035 CFTRP13569 1480 aa10.65□□□□□ -0.7
MDH1-208ENST00000454035 SPINK5Q9NQ38 1064 aaPredicted RBP10.61□□□□□ -0.71
MDH1-208ENST00000454035 SUPT5HO00267 1087 aaKnown RBP10.59□□□□□ -0.71
MDH1-208ENST00000454035 ATF5Q9Y2D1 282 aaPredicted RBP10.58□□□□□ -0.72
MDH1-208ENST00000454035 FANCD2Q9BXW9 1451 aa10.56□□□□□ -0.72
MDH1-208ENST00000454035 CEP164Q9UPV0 1460 aa10.54□□□□□ -0.72
MDH1-208ENST00000454035 MRC2Q9UBG0 1479 aa10.53□□□□□ -0.72
MDH1-208ENST00000454035 SP7Q8TDD2 431 aaPredicted RBP10.51□□□□□ -0.73
MDH1-208ENST00000454035 WDR62O43379 1518 aa10.49□□□□□ -0.73
MDH1-208ENST00000454035 PRDM2Q13029 1718 aa10.48□□□□□ -0.73
MDH1-208ENST00000454035 U3KPZ7 1027 aaPredicted RBP10.48□□□□□ -0.73
MDH1-208ENST00000454035 URB2Q14146 1524 aaKnown RBP10.46□□□□□ -0.74
MDH1-208ENST00000454035 SAMD1Q6SPF0 538 aaPredicted RBP10.43□□□□□ -0.74
MDH1-208ENST00000454035 CHRDL2Q6WN34 429 aa10.43□□□□□ -0.74
MDH1-208ENST00000454035 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.42□□□□□ -0.74
MDH1-208ENST00000454035 HNRNPUL2Q1KMD3 747 aaKnown RBP10.42□□□□□ -0.74
MDH1-208ENST00000454035 ABCC8Q09428 1581 aa10.41□□□□□ -0.74
MDH1-208ENST00000454035 RIMBP3CA6NJZ7 1639 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms