RNA–Protein interactions for RNA: ENST00000449600.1

NPHP1-208, Transcript of nephrocystin 1, humanhuman

TSL 3

Gene NPHP1, Length 486 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1-208ENST00000449600 AEBP2Q6ZN18 517 aaPredicted RBP29.76■■■□□ 2.35
NPHP1-208ENST00000449600 CHIC1Q5VXU3 224 aa27.96■■■□□ 2.07
NPHP1-208ENST00000449600 SENP3Q9H4L4 574 aaPredicted RBP25.33■■□□□ 1.65
NPHP1-208ENST00000449600 PHF23Q9BUL5 403 aaPredicted RBP24.98■■□□□ 1.59
NPHP1-208ENST00000449600 FOXD1Q16676 465 aa23.69■■□□□ 1.38
NPHP1-208ENST00000449600 MSH5O43196 834 aa22.21■■□□□ 1.15
NPHP1-208ENST00000449600 PLPPR3Q6T4P5 718 aa22.18■■□□□ 1.14
NPHP1-208ENST00000449600 POTEDQ86YR6 584 aa22.17■■□□□ 1.14
NPHP1-208ENST00000449600 PIAS4Q8N2W9 510 aaPredicted RBP22.02■■□□□ 1.12
NPHP1-208ENST00000449600 PPP6R1Q9UPN7 881 aa21.98■■□□□ 1.11
NPHP1-208ENST00000449600 ADRA2BP18089 450 aa21.84■■□□□ 1.09
NPHP1-208ENST00000449600 MAPK8IP2Q13387 824 aaPredicted RBP20.16■□□□□ 0.82
NPHP1-208ENST00000449600 DMRT2Q9Y5R5 561 aa20.08■□□□□ 0.81
NPHP1-208ENST00000449600 SCAF1Q9H7N4 1312 aaKnown RBP19.9■□□□□ 0.78
NPHP1-208ENST00000449600 PPP4R3CPQ6ZMV5 832 aa19.42■□□□□ 0.7
NPHP1-208ENST00000449600 NISCHQ9Y2I1 1504 aa19.27■□□□□ 0.68
NPHP1-208ENST00000449600 HOXD11P31277 338 aaPredicted RBP19.27■□□□□ 0.68
NPHP1-208ENST00000449600 CACNB1Q02641 598 aaPredicted RBP19.19■□□□□ 0.66
NPHP1-208ENST00000449600 DCAF8L1A6NGE4 600 aa19.15■□□□□ 0.66
NPHP1-208ENST00000449600 CNKSR2Q8WXI2 1034 aa19.11■□□□□ 0.65
NPHP1-208ENST00000449600 RNF216Q9NWF9 866 aaPredicted RBP19.02■□□□□ 0.64
NPHP1-208ENST00000449600 RNF39Q9H2S5 420 aa18.98■□□□□ 0.63
NPHP1-208ENST00000449600 DNAJC5BQ9UF47 199 aa18.66■□□□□ 0.58
NPHP1-208ENST00000449600 C1QBPQ07021 282 aaKnown RBP18.64■□□□□ 0.57
NPHP1-208ENST00000449600 NCBP3Q53F19 620 aaKnown RBP18.52■□□□□ 0.56
NPHP1-208ENST00000449600 ABCC9O60706 1549 aa18.41■□□□□ 0.54
NPHP1-208ENST00000449600 NPM3O75607 178 aaKnown RBP18.35■□□□□ 0.53
NPHP1-208ENST00000449600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.24■□□□□ 0.51
NPHP1-208ENST00000449600 U3KPZ7 1027 aaPredicted RBP17.93■□□□□ 0.46
NPHP1-208ENST00000449600 KCNA4P22459 653 aa17.77■□□□□ 0.44
NPHP1-208ENST00000449600 SPINK5Q9NQ38 1064 aaPredicted RBP17.74■□□□□ 0.43
NPHP1-208ENST00000449600 DSG3P32926 999 aa17.68■□□□□ 0.42
NPHP1-208ENST00000449600 CCDC180Q9P1Z9 1646 aa17.65■□□□□ 0.42
NPHP1-208ENST00000449600 CAPN15O75808 1086 aa17.64■□□□□ 0.41
NPHP1-208ENST00000449600 SLC4A2P04920 1241 aa17.63■□□□□ 0.41
NPHP1-208ENST00000449600 TRHP20396 242 aaPredicted RBP17.3■□□□□ 0.36
NPHP1-208ENST00000449600 POTEHQ6S545 545 aa17.3■□□□□ 0.36
NPHP1-208ENST00000449600 APLP2Q06481 763 aa17.28■□□□□ 0.36
NPHP1-208ENST00000449600 DNAJC5Q9H3Z4 198 aa17.28■□□□□ 0.36
NPHP1-208ENST00000449600 ZNF219Q9P2Y4 722 aaPredicted RBP17.28■□□□□ 0.36
NPHP1-208ENST00000449600 ABCB7O75027 752 aa17.24■□□□□ 0.35
NPHP1-208ENST00000449600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.23■□□□□ 0.35
NPHP1-208ENST00000449600 HNRNPUL2Q1KMD3 747 aaKnown RBP17.23■□□□□ 0.35
NPHP1-208ENST00000449600 RB1CC1Q8TDY2 1594 aa17.21■□□□□ 0.35
NPHP1-208ENST00000449600 SAMD1Q6SPF0 538 aaPredicted RBP17.14■□□□□ 0.33
NPHP1-208ENST00000449600 PABPN1Q86U42 306 aaKnown RBP eCLIP16.99■□□□□ 0.31
NPHP1-208ENST00000449600 MYCNP04198 464 aaPredicted RBP16.94■□□□□ 0.3
NPHP1-208ENST00000449600 NACADO15069 1562 aa16.93■□□□□ 0.3
NPHP1-208ENST00000449600 RBM42Q9BTD8 480 aaKnown RBP16.81■□□□□ 0.28
NPHP1-208ENST00000449600 POLA2Q14181 598 aa16.8■□□□□ 0.28
NPHP1-208ENST00000449600 BICRAQ9NZM4 1560 aa16.76■□□□□ 0.27
NPHP1-208ENST00000449600 CECR2Q9BXF3 1484 aa16.73■□□□□ 0.27
NPHP1-208ENST00000449600 UNC13AQ9UPW8 1703 aa16.72■□□□□ 0.27
NPHP1-208ENST00000449600 SLC4A1APQ9BWU0 796 aaKnown RBP16.67■□□□□ 0.26
NPHP1-208ENST00000449600 FOXD4L1Q9NU39 408 aa16.64■□□□□ 0.25
NPHP1-208ENST00000449600 ATF5Q9Y2D1 282 aaPredicted RBP16.64■□□□□ 0.25
NPHP1-208ENST00000449600 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
NPHP1-208ENST00000449600 CHRDL2Q6WN34 429 aa16.57■□□□□ 0.24
NPHP1-208ENST00000449600 SHROOM4Q9ULL8 1493 aa16.55■□□□□ 0.24
NPHP1-208ENST00000449600 MYO15BQ96JP2 1530 aa16.5■□□□□ 0.23
NPHP1-208ENST00000449600 DCAF8L2P0C7V8 631 aa16.46■□□□□ 0.23
NPHP1-208ENST00000449600 ZBTB12Q9Y330 459 aaPredicted RBP16.41■□□□□ 0.22
NPHP1-208ENST00000449600 EIF4G1Q04637 1599 aaKnown RBP16.4■□□□□ 0.22
NPHP1-208ENST00000449600 AKT1S1Q96B36 256 aa16.4■□□□□ 0.22
NPHP1-208ENST00000449600 ZBTB22O15209 634 aa16.38■□□□□ 0.21
NPHP1-208ENST00000449600 CUX2O14529 1486 aa16.32■□□□□ 0.2
NPHP1-208ENST00000449600 OSCARQ8IYS5 282 aa16.3■□□□□ 0.2
NPHP1-208ENST00000449600 REM2Q8IYK8 340 aaPredicted RBP16.25■□□□□ 0.19
NPHP1-208ENST00000449600 ATXN8OSP0DMR3 200 aa16.15■□□□□ 0.18
NPHP1-208ENST00000449600 PIP4P2Q8N4L2 257 aa16.15■□□□□ 0.18
NPHP1-208ENST00000449600 PITPNM1O00562 1244 aa16.1■□□□□ 0.17
NPHP1-208ENST00000449600 SP7Q8TDD2 431 aaPredicted RBP16.09■□□□□ 0.17
NPHP1-208ENST00000449600 FXR2P51116 673 aaKnown RBP eCLIP16.03■□□□□ 0.16
NPHP1-208ENST00000449600 TRIM41Q8WV44 630 aa16.01■□□□□ 0.15
NPHP1-208ENST00000449600 ERCC6Q03468 1493 aa15.96■□□□□ 0.14
NPHP1-208ENST00000449600 SCRIBQ14160 1630 aa15.95■□□□□ 0.14
NPHP1-208ENST00000449600 DCAF1Q9Y4B6 1507 aa15.94■□□□□ 0.14
NPHP1-208ENST00000449600 SPDYE2BA6NHP3 402 aa15.92■□□□□ 0.14
NPHP1-208ENST00000449600 SPDYE6P0CI01 402 aa15.92■□□□□ 0.14
NPHP1-208ENST00000449600 SPDYE2Q495Y8 402 aa15.92■□□□□ 0.14
NPHP1-208ENST00000449600 FBLN2P98095 1184 aa15.88■□□□□ 0.13
NPHP1-208ENST00000449600 MKRN4PQ13434 485 aaPredicted RBP15.86■□□□□ 0.13
NPHP1-208ENST00000449600 HAX1O00165 279 aa15.85■□□□□ 0.13
NPHP1-208ENST00000449600 ZCCHC6Q5VYS8 1495 aaKnown RBP15.79■□□□□ 0.12
NPHP1-208ENST00000449600 EVX2Q03828 476 aa15.75■□□□□ 0.11
NPHP1-208ENST00000449600 SSUH2Q9Y2M2 353 aa15.74■□□□□ 0.11
NPHP1-208ENST00000449600 SPDYE1Q8NFV5 336 aaPredicted RBP15.68■□□□□ 0.1
NPHP1-208ENST00000449600 NCAPD3P42695 1498 aa15.67■□□□□ 0.1
NPHP1-208ENST00000449600 ZNF692Q9BU19 519 aaPredicted RBP15.65■□□□□ 0.1
NPHP1-208ENST00000449600 PRKAR2AP13861 404 aaKnown RBP15.64■□□□□ 0.09
NPHP1-208ENST00000449600 CLEC11AQ9Y240 323 aa15.64■□□□□ 0.09
NPHP1-208ENST00000449600 THOC2Q8NI27 1593 aaKnown RBP15.63■□□□□ 0.09
NPHP1-208ENST00000449600 NESP48681 1621 aa15.57■□□□□ 0.08
NPHP1-208ENST00000449600 C19orf67A6NJJ6 358 aa15.52■□□□□ 0.08
NPHP1-208ENST00000449600 ATAD2BQ9ULI0 1458 aa15.46■□□□□ 0.06
NPHP1-208ENST00000449600 HMGXB3Q12766 1538 aa15.44■□□□□ 0.06
NPHP1-208ENST00000449600 CHADLQ6NUI6 762 aa15.43■□□□□ 0.06
NPHP1-208ENST00000449600 LAMC3Q9Y6N6 1575 aa15.4■□□□□ 0.06
NPHP1-208ENST00000449600 SMARCA2P51531 1590 aa15.38■□□□□ 0.05
NPHP1-208ENST00000449600 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms