RNA–Protein interactions for RNA: ENST00000448246.1

SP4-204, Transcript of Sp4 transcription factor, humanhuman

TSL 5

Gene SP4, Length 4,293 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP4-204ENST00000448246 NISCHQ9Y2I1 1504 aa19.38■□□□□ 0.69
SP4-204ENST00000448246 DCAF8L2P0C7V8 631 aa19.17■□□□□ 0.66
SP4-204ENST00000448246 SUPT5HO00267 1087 aaKnown RBP17.84■□□□□ 0.45
SP4-204ENST00000448246 SHROOM4Q9ULL8 1493 aa17.83■□□□□ 0.45
SP4-204ENST00000448246 EHMT2Q96KQ7 1210 aa16.97■□□□□ 0.31
SP4-204ENST00000448246 ABCC9O60706 1549 aa16.85■□□□□ 0.29
SP4-204ENST00000448246 FAM9AQ8IZU1 332 aaPredicted RBP16.74■□□□□ 0.27
SP4-204ENST00000448246 TRIM41Q8WV44 630 aa16.6■□□□□ 0.25
SP4-204ENST00000448246 APLP2Q06481 763 aa16.57■□□□□ 0.24
SP4-204ENST00000448246 PABPN1Q86U42 306 aaKnown RBP eCLIP16.54■□□□□ 0.24
SP4-204ENST00000448246 RANGAP1P46060 587 aaPredicted RBP16.42■□□□□ 0.22
SP4-204ENST00000448246 PCGF6Q9BYE7 350 aa16.34■□□□□ 0.21
SP4-204ENST00000448246 UBTFP17480 764 aaKnown RBP16.32■□□□□ 0.2
SP4-204ENST00000448246 HRCP23327 699 aa16.31■□□□□ 0.2
SP4-204ENST00000448246 TTBK1Q5TCY1 1321 aaPredicted RBP16.28■□□□□ 0.2
SP4-204ENST00000448246 ATP1B4Q9UN42 357 aaPredicted RBP16.25■□□□□ 0.19
SP4-204ENST00000448246 CCDC180Q9P1Z9 1646 aa16.1■□□□□ 0.17
SP4-204ENST00000448246 ZCCHC6Q5VYS8 1495 aaKnown RBP16.02■□□□□ 0.16
SP4-204ENST00000448246 CHIC1Q5VXU3 224 aa16■□□□□ 0.15
SP4-204ENST00000448246 PPARGC1BQ86YN6 1023 aaKnown RBP15.97■□□□□ 0.15
SP4-204ENST00000448246 SCRIBQ14160 1630 aa15.94■□□□□ 0.14
SP4-204ENST00000448246 PELP1Q8IZL8 1130 aaKnown RBP15.94■□□□□ 0.14
SP4-204ENST00000448246 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.86■□□□□ 0.13
SP4-204ENST00000448246 HNRNPUL2Q1KMD3 747 aaKnown RBP15.86■□□□□ 0.13
SP4-204ENST00000448246 LOC105371045A0A1W2PR82 267 aa15.83■□□□□ 0.12
SP4-204ENST00000448246 ZEB1P37275 1124 aaPredicted RBP15.8■□□□□ 0.12
SP4-204ENST00000448246 RB1CC1Q8TDY2 1594 aa15.78■□□□□ 0.12
SP4-204ENST00000448246 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
SP4-204ENST00000448246 CCER1Q8TC90 406 aaPredicted RBP15.73■□□□□ 0.11
SP4-204ENST00000448246 FBLN2P98095 1184 aa15.68■□□□□ 0.1
SP4-204ENST00000448246 NACADO15069 1562 aa15.67■□□□□ 0.1
SP4-204ENST00000448246 MYT1LQ9UL68 1186 aa15.66■□□□□ 0.1
SP4-204ENST00000448246 ITGAEP38570 1179 aa15.62■□□□□ 0.09
SP4-204ENST00000448246 MYO15BQ96JP2 1530 aa15.56■□□□□ 0.08
SP4-204ENST00000448246 CSRNP3Q8WYN3 585 aa15.48■□□□□ 0.07
SP4-204ENST00000448246 CENPBP07199 599 aaPredicted RBP15.45■□□□□ 0.06
SP4-204ENST00000448246 DCAF1Q9Y4B6 1507 aa15.45■□□□□ 0.06
SP4-204ENST00000448246 MYT1Q01538 1121 aa15.41■□□□□ 0.06
SP4-204ENST00000448246 P3H3Q8IVL6 736 aa15.37■□□□□ 0.05
SP4-204ENST00000448246 RSF1Q96T23 1441 aaPredicted RBP15.37■□□□□ 0.05
SP4-204ENST00000448246 FAM50AQ14320 339 aaKnown RBP15.33■□□□□ 0.05
SP4-204ENST00000448246 BAZ1BQ9UIG0 1483 aaKnown RBP15.29■□□□□ 0.04
SP4-204ENST00000448246 ARID3CA6NKF2 412 aa15.28■□□□□ 0.04
SP4-204ENST00000448246 SCAF1Q9H7N4 1312 aaKnown RBP15.24■□□□□ 0.03
SP4-204ENST00000448246 CECR2Q9BXF3 1484 aa15.24■□□□□ 0.03
SP4-204ENST00000448246 BAZ1AQ9NRL2 1556 aaPredicted RBP15.21■□□□□ 0.03
SP4-204ENST00000448246 CHMP7Q8WUX9 453 aaPredicted RBP15.18■□□□□ 0.02
SP4-204ENST00000448246 CDK11AQ9UQ88 783 aaPredicted RBP15.17■□□□□ 0.02
SP4-204ENST00000448246 TRIM52Q96A61 297 aa15.17■□□□□ 0.02
SP4-204ENST00000448246 POLR3GLQ9BT43 218 aa15.14■□□□□ 0.01
SP4-204ENST00000448246 ACIN1Q9UKV3 1341 aaKnown RBP15.14■□□□□ 0.01
SP4-204ENST00000448246 NPM1P06748 294 aaKnown RBP eCLIP15.13■□□□□ 0.01
SP4-204ENST00000448246 DIEXFQ68CQ4 756 aaKnown RBP15.12■□□□□ 0.01
SP4-204ENST00000448246 GTF3C3Q9Y5Q9 886 aa15.12■□□□□ 0.01
SP4-204ENST00000448246 YTHDC1Q96MU7 727 aaKnown RBP15.12■□□□□ 0.01
SP4-204ENST00000448246 ZNF777Q9ULD5 760 aaPredicted RBP15.09■□□□□ 0.01
SP4-204ENST00000448246 WRNQ14191 1432 aaPredicted RBP eCLIP15.06■□□□□ 0
SP4-204ENST00000448246 ERCC6Q03468 1493 aa15.06■□□□□ 0
SP4-204ENST00000448246 NEUROD1Q13562 356 aa15□□□□□ -0.01
SP4-204ENST00000448246 MROH2BQ7Z745 1585 aa15□□□□□ -0.01
SP4-204ENST00000448246 CNGB1Q14028 1251 aaPredicted RBP14.96□□□□□ -0.01
SP4-204ENST00000448246 SLC4A1APQ9BWU0 796 aaKnown RBP14.93□□□□□ -0.02
SP4-204ENST00000448246 KIF27Q86VH2 1401 aa14.93□□□□□ -0.02
SP4-204ENST00000448246 SMARCA2P51531 1590 aa14.93□□□□□ -0.02
SP4-204ENST00000448246 EEA1Q15075 1411 aa14.92□□□□□ -0.02
SP4-204ENST00000448246 ZNF326Q5BKZ1 582 aaKnown RBP14.9□□□□□ -0.02
SP4-204ENST00000448246 ESF1Q9H501 851 aaKnown RBP14.87□□□□□ -0.03
SP4-204ENST00000448246 CLIP1P30622 1438 aa14.86□□□□□ -0.03
SP4-204ENST00000448246 PDS5BQ9NTI5 1447 aa14.86□□□□□ -0.03
SP4-204ENST00000448246 CCDC88BA6NC98 1476 aa14.85□□□□□ -0.03
SP4-204ENST00000448246 MTUS2Q5JR59 1369 aa14.85□□□□□ -0.03
SP4-204ENST00000448246 NEFLP07196 543 aa14.82□□□□□ -0.04
SP4-204ENST00000448246 ZNF316A6NFI3 1004 aaPredicted RBP14.81□□□□□ -0.04
SP4-204ENST00000448246 KCNH8Q96L42 1107 aa14.81□□□□□ -0.04
SP4-204ENST00000448246 TSPY4P0CV99 314 aa14.8□□□□□ -0.04
SP4-204ENST00000448246 TSPY10P0CW01 314 aa14.8□□□□□ -0.04
SP4-204ENST00000448246 ATAD2BQ9ULI0 1458 aa14.8□□□□□ -0.04
SP4-204ENST00000448246 PLEKHD1A6NEE1 506 aa14.8□□□□□ -0.04
SP4-204ENST00000448246 BCANQ96GW7 911 aa14.79□□□□□ -0.04
SP4-204ENST00000448246 GOLGA3Q08378 1498 aa14.79□□□□□ -0.04
SP4-204ENST00000448246 CADPSQ9ULU8 1353 aa14.78□□□□□ -0.04
SP4-204ENST00000448246 CHIC2Q9UKJ5 165 aa14.78□□□□□ -0.04
SP4-204ENST00000448246 CUX2O14529 1486 aa14.77□□□□□ -0.05
SP4-204ENST00000448246 CARMIL1Q5VZK9 1371 aa14.73□□□□□ -0.05
SP4-204ENST00000448246 PLPPR3Q6T4P5 718 aa14.73□□□□□ -0.05
SP4-204ENST00000448246 CEP164Q9UPV0 1460 aa14.73□□□□□ -0.05
SP4-204ENST00000448246 WIZO95785 1651 aa14.72□□□□□ -0.05
SP4-204ENST00000448246 CHGAP10645 457 aaKnown RBP14.71□□□□□ -0.05
SP4-204ENST00000448246 TDRD9Q8NDG6 1382 aaKnown RBP14.71□□□□□ -0.05
SP4-204ENST00000448246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.71□□□□□ -0.06
SP4-204ENST00000448246 CEP162Q5TB80 1403 aa14.71□□□□□ -0.06
SP4-204ENST00000448246 STAG3Q9UJ98 1225 aa14.7□□□□□ -0.06
SP4-204ENST00000448246 SOGA1O94964 1423 aa14.7□□□□□ -0.06
SP4-204ENST00000448246 TOP2AP11388 1531 aaKnown RBP14.69□□□□□ -0.06
SP4-204ENST00000448246 TNIKQ9UKE5 1360 aa14.68□□□□□ -0.06
SP4-204ENST00000448246 SMARCA4P51532 1647 aa14.67□□□□□ -0.06
SP4-204ENST00000448246 ABCC8Q09428 1581 aa14.63□□□□□ -0.07
SP4-204ENST00000448246 CFDP1Q9UEE9 299 aaPredicted RBP14.62□□□□□ -0.07
SP4-204ENST00000448246 RRP7BPQ9NSQ0 103 aa14.58□□□□□ -0.07
SP4-204ENST00000448246 TONSLQ96HA7 1378 aa14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms