RNA–Protein interactions for RNA: ENST00000445692.5

APLF-203, Transcript of aprataxin and PNKP like factor, humanhuman

TSL 5

Gene APLF, Length 3,906 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APLF-203ENST00000445692 NISCHQ9Y2I1 1504 aa22.26■■□□□ 1.15
APLF-203ENST00000445692 SUPT5HO00267 1087 aaKnown RBP20.62■□□□□ 0.89
APLF-203ENST00000445692 SHROOM4Q9ULL8 1493 aa20.5■□□□□ 0.87
APLF-203ENST00000445692 DCAF8L2P0C7V8 631 aa20.44■□□□□ 0.86
APLF-203ENST00000445692 PCGF6Q9BYE7 350 aa20■□□□□ 0.79
APLF-203ENST00000445692 EHMT2Q96KQ7 1210 aa19.83■□□□□ 0.76
APLF-203ENST00000445692 PPARGC1BQ86YN6 1023 aaKnown RBP19.64■□□□□ 0.73
APLF-203ENST00000445692 CCDC180Q9P1Z9 1646 aa19.59■□□□□ 0.73
APLF-203ENST00000445692 HRCP23327 699 aa19.52■□□□□ 0.72
APLF-203ENST00000445692 FAM9AQ8IZU1 332 aaPredicted RBP19.37■□□□□ 0.69
APLF-203ENST00000445692 LOC105371045A0A1W2PR82 267 aa19.26■□□□□ 0.67
APLF-203ENST00000445692 ABCC9O60706 1549 aa19.24■□□□□ 0.67
APLF-203ENST00000445692 TTBK1Q5TCY1 1321 aaPredicted RBP19.19■□□□□ 0.66
APLF-203ENST00000445692 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
APLF-203ENST00000445692 PELP1Q8IZL8 1130 aaKnown RBP19.14■□□□□ 0.65
APLF-203ENST00000445692 TRIM26Q12899 539 aaPredicted RBP18.86■□□□□ 0.61
APLF-203ENST00000445692 TRIM41Q8WV44 630 aa18.78■□□□□ 0.6
APLF-203ENST00000445692 CCER1Q8TC90 406 aaPredicted RBP18.78■□□□□ 0.6
APLF-203ENST00000445692 YTHDC1Q96MU7 727 aaKnown RBP18.75■□□□□ 0.59
APLF-203ENST00000445692 ZEB1P37275 1124 aaPredicted RBP18.71■□□□□ 0.59
APLF-203ENST00000445692 MYO15BQ96JP2 1530 aa18.61■□□□□ 0.57
APLF-203ENST00000445692 ZCCHC6Q5VYS8 1495 aaKnown RBP18.58■□□□□ 0.56
APLF-203ENST00000445692 CENPBP07199 599 aaPredicted RBP18.57■□□□□ 0.56
APLF-203ENST00000445692 MYT1Q01538 1121 aa18.57■□□□□ 0.56
APLF-203ENST00000445692 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.57■□□□□ 0.56
APLF-203ENST00000445692 RANGAP1P46060 587 aaPredicted RBP18.49■□□□□ 0.55
APLF-203ENST00000445692 SCAF1Q9H7N4 1312 aaKnown RBP18.41■□□□□ 0.54
APLF-203ENST00000445692 GTF3C3Q9Y5Q9 886 aa18.37■□□□□ 0.53
APLF-203ENST00000445692 NACADO15069 1562 aa18.35■□□□□ 0.53
APLF-203ENST00000445692 RB1CC1Q8TDY2 1594 aa18.35■□□□□ 0.53
APLF-203ENST00000445692 DIEXFQ68CQ4 756 aaKnown RBP18.29■□□□□ 0.52
APLF-203ENST00000445692 UNC13AQ9UPW8 1703 aa18.28■□□□□ 0.52
APLF-203ENST00000445692 DCAF1Q9Y4B6 1507 aa18.26■□□□□ 0.51
APLF-203ENST00000445692 UBTFP17480 764 aaKnown RBP18.22■□□□□ 0.51
APLF-203ENST00000445692 NEUROD1Q13562 356 aa18.19■□□□□ 0.5
APLF-203ENST00000445692 ACIN1Q9UKV3 1341 aaKnown RBP18.17■□□□□ 0.5
APLF-203ENST00000445692 APLP2Q06481 763 aa18.16■□□□□ 0.5
APLF-203ENST00000445692 HNRNPUL2Q1KMD3 747 aaKnown RBP18.15■□□□□ 0.5
APLF-203ENST00000445692 SCRIBQ14160 1630 aa18.11■□□□□ 0.49
APLF-203ENST00000445692 BICRAQ9NZM4 1560 aa18.07■□□□□ 0.48
APLF-203ENST00000445692 PABPN1Q86U42 306 aaKnown RBP eCLIP18.06■□□□□ 0.48
APLF-203ENST00000445692 ITGAEP38570 1179 aa17.87■□□□□ 0.45
APLF-203ENST00000445692 BCANQ96GW7 911 aa17.84■□□□□ 0.45
APLF-203ENST00000445692 ZNF316A6NFI3 1004 aaPredicted RBP17.79■□□□□ 0.44
APLF-203ENST00000445692 DNAJC5BQ9UF47 199 aa17.73■□□□□ 0.43
APLF-203ENST00000445692 ATP1B4Q9UN42 357 aaPredicted RBP17.73■□□□□ 0.43
APLF-203ENST00000445692 MIER1Q8N108 512 aa17.68■□□□□ 0.42
APLF-203ENST00000445692 ERICH6Q7L0X2 663 aa17.67■□□□□ 0.42
APLF-203ENST00000445692 NEFLP07196 543 aa17.62■□□□□ 0.41
APLF-203ENST00000445692 CNGB1Q14028 1251 aaPredicted RBP17.53■□□□□ 0.4
APLF-203ENST00000445692 CECR2Q9BXF3 1484 aa17.5■□□□□ 0.39
APLF-203ENST00000445692 EIF4G1Q04637 1599 aaKnown RBP17.46■□□□□ 0.39
APLF-203ENST00000445692 CC2D2AQ9P2K1 1620 aa17.39■□□□□ 0.37
APLF-203ENST00000445692 CSRNP3Q8WYN3 585 aa17.37■□□□□ 0.37
APLF-203ENST00000445692 RSF1Q96T23 1441 aaPredicted RBP17.33■□□□□ 0.37
APLF-203ENST00000445692 FKBP8Q14318 412 aa17.32■□□□□ 0.36
APLF-203ENST00000445692 MROH2BQ7Z745 1585 aa17.28■□□□□ 0.36
APLF-203ENST00000445692 HIRIP3Q9BW71 556 aaPredicted RBP17.27■□□□□ 0.36
APLF-203ENST00000445692 SMARCA4P51532 1647 aa17.26■□□□□ 0.35
APLF-203ENST00000445692 POLR3GLQ9BT43 218 aa17.24■□□□□ 0.35
APLF-203ENST00000445692 FAM50AQ14320 339 aaKnown RBP17.23■□□□□ 0.35
APLF-203ENST00000445692 TRIM52Q96A61 297 aa17.23■□□□□ 0.35
APLF-203ENST00000445692 DDX10Q13206 875 aaKnown RBP17.22■□□□□ 0.35
APLF-203ENST00000445692 BCL11AQ9H165 835 aa17.22■□□□□ 0.35
APLF-203ENST00000445692 IRX6P78412 446 aaPredicted RBP17.16■□□□□ 0.34
APLF-203ENST00000445692 SUPT16HQ9Y5B9 1047 aaKnown RBP17.16■□□□□ 0.34
APLF-203ENST00000445692 WIZO95785 1651 aa17.14■□□□□ 0.33
APLF-203ENST00000445692 BAZ1AQ9NRL2 1556 aaPredicted RBP17.14■□□□□ 0.33
APLF-203ENST00000445692 CEP162Q5TB80 1403 aa17.14■□□□□ 0.33
APLF-203ENST00000445692 ATAD2BQ9ULI0 1458 aa17.11■□□□□ 0.33
APLF-203ENST00000445692 P3H3Q8IVL6 736 aa17.08■□□□□ 0.32
APLF-203ENST00000445692 ANP32CO43423 234 aa17.06■□□□□ 0.32
APLF-203ENST00000445692 ANP32EQ9BTT0 268 aa17.05■□□□□ 0.32
APLF-203ENST00000445692 PEG3Q9GZU2 1588 aa17.03■□□□□ 0.32
APLF-203ENST00000445692 KCNH8Q96L42 1107 aa17■□□□□ 0.31
APLF-203ENST00000445692 NCAPD3P42695 1498 aa17■□□□□ 0.31
APLF-203ENST00000445692 CDK11AQ9UQ88 783 aaPredicted RBP16.99■□□□□ 0.31
APLF-203ENST00000445692 SENP3-EIF4A1A0A087X0R7 540 aa16.99■□□□□ 0.31
APLF-203ENST00000445692 SOGA1O94964 1423 aa16.98■□□□□ 0.31
APLF-203ENST00000445692 TSHZ2Q9NRE2 1034 aa16.97■□□□□ 0.31
APLF-203ENST00000445692 HNRNPUQ00839 825 aaKnown RBP eCLIP16.95■□□□□ 0.3
APLF-203ENST00000445692 SMARCA2P51531 1590 aa16.94■□□□□ 0.3
APLF-203ENST00000445692 CLIP1P30622 1438 aa16.91■□□□□ 0.3
APLF-203ENST00000445692 NBR1Q14596 966 aa16.91■□□□□ 0.3
APLF-203ENST00000445692 HMGXB3Q12766 1538 aa16.9■□□□□ 0.3
APLF-203ENST00000445692 BAZ1BQ9UIG0 1483 aaKnown RBP16.9■□□□□ 0.3
APLF-203ENST00000445692 SIN3AQ96ST3 1273 aa16.88■□□□□ 0.29
APLF-203ENST00000445692 TNIKQ9UKE5 1360 aa16.85■□□□□ 0.29
APLF-203ENST00000445692 CCDC88BA6NC98 1476 aa16.85■□□□□ 0.29
APLF-203ENST00000445692 ABCC8Q09428 1581 aa16.84■□□□□ 0.29
APLF-203ENST00000445692 RTL5Q5HYW3 569 aaPredicted RBP16.84■□□□□ 0.29
APLF-203ENST00000445692 FAM9BQ8IZU0 186 aa16.84■□□□□ 0.29
APLF-203ENST00000445692 ARID3CA6NKF2 412 aa16.83■□□□□ 0.29
APLF-203ENST00000445692 CLSPNQ9HAW4 1339 aa16.82■□□□□ 0.28
APLF-203ENST00000445692 ZNF326Q5BKZ1 582 aaKnown RBP16.82■□□□□ 0.28
APLF-203ENST00000445692 NPM2Q86SE8 214 aaKnown RBP16.8■□□□□ 0.28
APLF-203ENST00000445692 NESP48681 1621 aa16.8■□□□□ 0.28
APLF-203ENST00000445692 RBM19Q9Y4C8 960 aaKnown RBP16.79■□□□□ 0.28
APLF-203ENST00000445692 TOP2AP11388 1531 aaKnown RBP16.77■□□□□ 0.27
APLF-203ENST00000445692 KANK4Q5T7N3 995 aaPredicted RBP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms