RNA–Protein interactions for RNA: ENST00000441560.6

ATL1-202, Transcript of atlastin GTPase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene ATL1, Length 2,853 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATL1-202ENST00000441560 NISCHQ9Y2I1 1504 aa17.08■□□□□ 0.32
ATL1-202ENST00000441560 PELP1Q8IZL8 1130 aaKnown RBP17.06■□□□□ 0.32
ATL1-202ENST00000441560 HRCP23327 699 aa16.78■□□□□ 0.28
ATL1-202ENST00000441560 MYT1Q01538 1121 aa16.58■□□□□ 0.25
ATL1-202ENST00000441560 PPARGC1BQ86YN6 1023 aaKnown RBP16.49■□□□□ 0.23
ATL1-202ENST00000441560 PCGF6Q9BYE7 350 aa16.31■□□□□ 0.2
ATL1-202ENST00000441560 SCAF1Q9H7N4 1312 aaKnown RBP16.19■□□□□ 0.18
ATL1-202ENST00000441560 MYO15BQ96JP2 1530 aa15.86■□□□□ 0.13
ATL1-202ENST00000441560 SUPT5HO00267 1087 aaKnown RBP15.85■□□□□ 0.13
ATL1-202ENST00000441560 TTBK1Q5TCY1 1321 aaPredicted RBP15.74■□□□□ 0.11
ATL1-202ENST00000441560 SHROOM4Q9ULL8 1493 aa15.72■□□□□ 0.11
ATL1-202ENST00000441560 CHIC1Q5VXU3 224 aa15.66■□□□□ 0.1
ATL1-202ENST00000441560 ACIN1Q9UKV3 1341 aaKnown RBP15.6■□□□□ 0.09
ATL1-202ENST00000441560 TRIM26Q12899 539 aaPredicted RBP15.58■□□□□ 0.09
ATL1-202ENST00000441560 ZEB1P37275 1124 aaPredicted RBP15.58■□□□□ 0.08
ATL1-202ENST00000441560 NEUROD1Q13562 356 aa15.57■□□□□ 0.08
ATL1-202ENST00000441560 DCAF1Q9Y4B6 1507 aa15.56■□□□□ 0.08
ATL1-202ENST00000441560 BCL11AQ9H165 835 aa15.56■□□□□ 0.08
ATL1-202ENST00000441560 GTF3C3Q9Y5Q9 886 aa15.54■□□□□ 0.08
ATL1-202ENST00000441560 PRKCSHP14314 528 aaPredicted RBP15.5■□□□□ 0.07
ATL1-202ENST00000441560 CCDC180Q9P1Z9 1646 aa15.44■□□□□ 0.06
ATL1-202ENST00000441560 FAM9AQ8IZU1 332 aaPredicted RBP15.43■□□□□ 0.06
ATL1-202ENST00000441560 LOC105371045A0A1W2PR82 267 aa15.42■□□□□ 0.06
ATL1-202ENST00000441560 CENPBP07199 599 aaPredicted RBP15.36■□□□□ 0.05
ATL1-202ENST00000441560 DIEXFQ68CQ4 756 aaKnown RBP15.13■□□□□ 0.01
ATL1-202ENST00000441560 ERICH6Q7L0X2 663 aa15.05■□□□□ -0
ATL1-202ENST00000441560 ANP32EQ9BTT0 268 aa15.05■□□□□ -0
ATL1-202ENST00000441560 YTHDC1Q96MU7 727 aaKnown RBP15.02■□□□□ -0
ATL1-202ENST00000441560 CSRNP3Q8WYN3 585 aa14.96□□□□□ -0.01
ATL1-202ENST00000441560 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.95□□□□□ -0.02
ATL1-202ENST00000441560 CCER1Q8TC90 406 aaPredicted RBP14.93□□□□□ -0.02
ATL1-202ENST00000441560 APLP2Q06481 763 aa14.92□□□□□ -0.02
ATL1-202ENST00000441560 TRIM41Q8WV44 630 aa14.79□□□□□ -0.04
ATL1-202ENST00000441560 EHMT2Q96KQ7 1210 aa14.72□□□□□ -0.05
ATL1-202ENST00000441560 TSHZ2Q9NRE2 1034 aa14.71□□□□□ -0.06
ATL1-202ENST00000441560 MIER1Q8N108 512 aa14.7□□□□□ -0.06
ATL1-202ENST00000441560 ZNF316A6NFI3 1004 aaPredicted RBP14.69□□□□□ -0.06
ATL1-202ENST00000441560 SUPT16HQ9Y5B9 1047 aaKnown RBP14.66□□□□□ -0.06
ATL1-202ENST00000441560 ZCCHC6Q5VYS8 1495 aaKnown RBP14.59□□□□□ -0.07
ATL1-202ENST00000441560 ANO8Q9HCE9 1232 aaPredicted RBP14.56□□□□□ -0.08
ATL1-202ENST00000441560 CLSPNQ9HAW4 1339 aa14.52□□□□□ -0.09
ATL1-202ENST00000441560 DCAF8L2P0C7V8 631 aa14.47□□□□□ -0.09
ATL1-202ENST00000441560 BCANQ96GW7 911 aa14.37□□□□□ -0.11
ATL1-202ENST00000441560 RBM19Q9Y4C8 960 aaKnown RBP14.33□□□□□ -0.11
ATL1-202ENST00000441560 SALL2Q9Y467 1007 aaPredicted RBP14.3□□□□□ -0.12
ATL1-202ENST00000441560 CCDC136Q96JN2 1154 aa14.29□□□□□ -0.12
ATL1-202ENST00000441560 UBE2Q2Q8WVN8 375 aa14.25□□□□□ -0.13
ATL1-202ENST00000441560 MSH5O43196 834 aa14.24□□□□□ -0.13
ATL1-202ENST00000441560 FKBP8Q14318 412 aa14.21□□□□□ -0.13
ATL1-202ENST00000441560 DEKP35659 375 aaKnown RBP14.19□□□□□ -0.14
ATL1-202ENST00000441560 EIF5BO60841 1220 aaKnown RBP14.14□□□□□ -0.15
ATL1-202ENST00000441560 ITGAEP38570 1179 aa14.14□□□□□ -0.15
ATL1-202ENST00000441560 HNRNPUL2Q1KMD3 747 aaKnown RBP14.11□□□□□ -0.15
ATL1-202ENST00000441560 SLC24A1O60721 1099 aa14.1□□□□□ -0.15
ATL1-202ENST00000441560 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.09□□□□□ -0.15
ATL1-202ENST00000441560 NEFLP07196 543 aa14.07□□□□□ -0.16
ATL1-202ENST00000441560 MYT1LQ9UL68 1186 aa14.07□□□□□ -0.16
ATL1-202ENST00000441560 KCNH8Q96L42 1107 aa14.06□□□□□ -0.16
ATL1-202ENST00000441560 ERICH6BQ5W0A0 696 aa14.04□□□□□ -0.16
ATL1-202ENST00000441560 WRNQ14191 1432 aaPredicted RBP eCLIP14.03□□□□□ -0.16
ATL1-202ENST00000441560 FANCIQ9NVI1 1328 aa14.03□□□□□ -0.16
ATL1-202ENST00000441560 RB1CC1Q8TDY2 1594 aa14□□□□□ -0.17
ATL1-202ENST00000441560 RTN4Q9NQC3 1192 aaKnown RBP13.97□□□□□ -0.17
ATL1-202ENST00000441560 RSF1Q96T23 1441 aaPredicted RBP13.97□□□□□ -0.17
ATL1-202ENST00000441560 PLEKHG5O94827 1062 aa13.96□□□□□ -0.17
ATL1-202ENST00000441560 PKNOX2Q96KN3 472 aa13.96□□□□□ -0.18
ATL1-202ENST00000441560 ABCC9O60706 1549 aa13.94□□□□□ -0.18
ATL1-202ENST00000441560 CEP162Q5TB80 1403 aa13.94□□□□□ -0.18
ATL1-202ENST00000441560 IL27Q8NEV9 243 aa13.93□□□□□ -0.18
ATL1-202ENST00000441560 NBR1Q14596 966 aa13.92□□□□□ -0.18
ATL1-202ENST00000441560 CDK11AQ9UQ88 783 aaPredicted RBP13.91□□□□□ -0.18
ATL1-202ENST00000441560 TRIM52Q96A61 297 aa13.86□□□□□ -0.19
ATL1-202ENST00000441560 UBTFP17480 764 aaKnown RBP13.8□□□□□ -0.2
ATL1-202ENST00000441560 PODXL2Q9NZ53 605 aa13.8□□□□□ -0.2
ATL1-202ENST00000441560 DAXXQ9UER7 740 aaPredicted RBP13.8□□□□□ -0.2
ATL1-202ENST00000441560 IRX6P78412 446 aaPredicted RBP13.78□□□□□ -0.2
ATL1-202ENST00000441560 NOP58Q9Y2X3 529 aaKnown RBP13.77□□□□□ -0.2
ATL1-202ENST00000441560 TNIKQ9UKE5 1360 aa13.76□□□□□ -0.21
ATL1-202ENST00000441560 PAK3O75914 559 aaPredicted RBP13.74□□□□□ -0.21
ATL1-202ENST00000441560 RTL5Q5HYW3 569 aaPredicted RBP13.74□□□□□ -0.21
ATL1-202ENST00000441560 DHX57Q6P158 1386 aaKnown RBP13.74□□□□□ -0.21
ATL1-202ENST00000441560 DDX10Q13206 875 aaKnown RBP13.74□□□□□ -0.21
ATL1-202ENST00000441560 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
ATL1-202ENST00000441560 TIMELESSQ9UNS1 1208 aa13.62□□□□□ -0.23
ATL1-202ENST00000441560 SOGA1O94964 1423 aa13.62□□□□□ -0.23
ATL1-202ENST00000441560 CCDC88BA6NC98 1476 aa13.62□□□□□ -0.23
ATL1-202ENST00000441560 ANP32CO43423 234 aa13.6□□□□□ -0.23
ATL1-202ENST00000441560 CCER2I3L3R5 266 aa13.59□□□□□ -0.23
ATL1-202ENST00000441560 PPP4R2Q9NY27 417 aa13.59□□□□□ -0.23
ATL1-202ENST00000441560 B4GALNT3Q6L9W6 998 aa13.58□□□□□ -0.24
ATL1-202ENST00000441560 HNRNPUQ00839 825 aaKnown RBP eCLIP13.56□□□□□ -0.24
ATL1-202ENST00000441560 ZMYND15Q9H091 742 aa13.56□□□□□ -0.24
ATL1-202ENST00000441560 PPP1R15AO75807 674 aaPredicted RBP13.55□□□□□ -0.24
ATL1-202ENST00000441560 ANP32AP39687 249 aaKnown RBP13.55□□□□□ -0.24
ATL1-202ENST00000441560 ZBTB47Q9UFB7 747 aaPredicted RBP13.55□□□□□ -0.24
ATL1-202ENST00000441560 NACADO15069 1562 aa13.55□□□□□ -0.24
ATL1-202ENST00000441560 HIRIP3Q9BW71 556 aaPredicted RBP13.54□□□□□ -0.24
ATL1-202ENST00000441560 IPO9Q96P70 1041 aaKnown RBP13.54□□□□□ -0.24
ATL1-202ENST00000441560 VSIG10Q8N0Z9 540 aa13.53□□□□□ -0.24
ATL1-202ENST00000441560 GOLGA3Q08378 1498 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms