RNA–Protein interactions for RNA: ENST00000439068.6

LSMEM1-202, Transcript of leucine rich single-pass membrane protein 1, humanhuman

APPRIS P1 TSL 3 BASIC

Gene LSMEM1, Length 730 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSMEM1-202ENST00000439068 AEBP2Q6ZN18 517 aaPredicted RBP28.96■■■□□ 2.23
LSMEM1-202ENST00000439068 CHIC1Q5VXU3 224 aa28.71■■■□□ 2.19
LSMEM1-202ENST00000439068 PHF23Q9BUL5 403 aaPredicted RBP25.43■■□□□ 1.66
LSMEM1-202ENST00000439068 SENP3Q9H4L4 574 aaPredicted RBP24.3■■□□□ 1.48
LSMEM1-202ENST00000439068 PLPPR3Q6T4P5 718 aa23.51■■□□□ 1.35
LSMEM1-202ENST00000439068 FOXD1Q16676 465 aa22.61■■□□□ 1.21
LSMEM1-202ENST00000439068 ADRA2BP18089 450 aa22.29■■□□□ 1.16
LSMEM1-202ENST00000439068 PPP6R1Q9UPN7 881 aa22.29■■□□□ 1.16
LSMEM1-202ENST00000439068 NISCHQ9Y2I1 1504 aa21.7■■□□□ 1.07
LSMEM1-202ENST00000439068 PIAS4Q8N2W9 510 aaPredicted RBP21.41■■□□□ 1.02
LSMEM1-202ENST00000439068 KCNA4P22459 653 aa21.1■□□□□ 0.97
LSMEM1-202ENST00000439068 PPP4R3CPQ6ZMV5 832 aa20.87■□□□□ 0.93
LSMEM1-202ENST00000439068 MSH5O43196 834 aa20.46■□□□□ 0.87
LSMEM1-202ENST00000439068 NCBP3Q53F19 620 aaKnown RBP20.38■□□□□ 0.85
LSMEM1-202ENST00000439068 EHMT2Q96KQ7 1210 aa20.31■□□□□ 0.84
LSMEM1-202ENST00000439068 NPM3O75607 178 aaKnown RBP20.2■□□□□ 0.82
LSMEM1-202ENST00000439068 SCAF1Q9H7N4 1312 aaKnown RBP20.16■□□□□ 0.82
LSMEM1-202ENST00000439068 SLC4A1APQ9BWU0 796 aaKnown RBP20.13■□□□□ 0.81
LSMEM1-202ENST00000439068 MAPK8IP2Q13387 824 aaPredicted RBP20.1■□□□□ 0.81
LSMEM1-202ENST00000439068 CNKSR2Q8WXI2 1034 aa20.09■□□□□ 0.81
LSMEM1-202ENST00000439068 ABCC9O60706 1549 aa19.85■□□□□ 0.77
LSMEM1-202ENST00000439068 CSRNP3Q8WYN3 585 aa19.78■□□□□ 0.76
LSMEM1-202ENST00000439068 RNF216Q9NWF9 866 aaPredicted RBP19.54■□□□□ 0.72
LSMEM1-202ENST00000439068 DMRT2Q9Y5R5 561 aa19.52■□□□□ 0.72
LSMEM1-202ENST00000439068 CCDC180Q9P1Z9 1646 aa19.5■□□□□ 0.71
LSMEM1-202ENST00000439068 ZBTB22O15209 634 aa19.47■□□□□ 0.71
LSMEM1-202ENST00000439068 DNAJC5BQ9UF47 199 aa19.35■□□□□ 0.69
LSMEM1-202ENST00000439068 HOXD11P31277 338 aaPredicted RBP19.33■□□□□ 0.68
LSMEM1-202ENST00000439068 FOXD4L1Q9NU39 408 aa19.14■□□□□ 0.65
LSMEM1-202ENST00000439068 SLC4A2P04920 1241 aa18.98■□□□□ 0.63
LSMEM1-202ENST00000439068 RB1CC1Q8TDY2 1594 aa18.79■□□□□ 0.6
LSMEM1-202ENST00000439068 DCAF8L1A6NGE4 600 aa18.73■□□□□ 0.59
LSMEM1-202ENST00000439068 DCAF8L2P0C7V8 631 aa18.68■□□□□ 0.58
LSMEM1-202ENST00000439068 NACADO15069 1562 aa18.6■□□□□ 0.57
LSMEM1-202ENST00000439068 MYCNP04198 464 aaPredicted RBP18.56■□□□□ 0.56
LSMEM1-202ENST00000439068 PABPN1Q86U42 306 aaKnown RBP eCLIP18.53■□□□□ 0.56
LSMEM1-202ENST00000439068 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.47■□□□□ 0.55
LSMEM1-202ENST00000439068 ATXN8OSP0DMR3 200 aa18.35■□□□□ 0.53
LSMEM1-202ENST00000439068 U3KPZ7 1027 aaPredicted RBP18.26■□□□□ 0.51
LSMEM1-202ENST00000439068 MYO15BQ96JP2 1530 aa18.25■□□□□ 0.51
LSMEM1-202ENST00000439068 ATF5Q9Y2D1 282 aaPredicted RBP18.21■□□□□ 0.51
LSMEM1-202ENST00000439068 UNC13AQ9UPW8 1703 aa18.16■□□□□ 0.5
LSMEM1-202ENST00000439068 BICRAQ9NZM4 1560 aa18.13■□□□□ 0.49
LSMEM1-202ENST00000439068 SAMD1Q6SPF0 538 aaPredicted RBP18.06■□□□□ 0.48
LSMEM1-202ENST00000439068 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.04■□□□□ 0.48
LSMEM1-202ENST00000439068 HNRNPUL2Q1KMD3 747 aaKnown RBP18.04■□□□□ 0.48
LSMEM1-202ENST00000439068 SHROOM4Q9ULL8 1493 aa17.98■□□□□ 0.47
LSMEM1-202ENST00000439068 CECR2Q9BXF3 1484 aa17.94■□□□□ 0.46
LSMEM1-202ENST00000439068 DCAF1Q9Y4B6 1507 aa17.91■□□□□ 0.46
LSMEM1-202ENST00000439068 ZCCHC6Q5VYS8 1495 aaKnown RBP17.88■□□□□ 0.45
LSMEM1-202ENST00000439068 CC2D2AQ9P2K1 1620 aa17.87■□□□□ 0.45
LSMEM1-202ENST00000439068 FKBP8Q14318 412 aa17.83■□□□□ 0.44
LSMEM1-202ENST00000439068 SCRIBQ14160 1630 aa17.78■□□□□ 0.44
LSMEM1-202ENST00000439068 POTEDQ86YR6 584 aa17.77■□□□□ 0.44
LSMEM1-202ENST00000439068 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.44
LSMEM1-202ENST00000439068 ZNF219Q9P2Y4 722 aaPredicted RBP17.75■□□□□ 0.43
LSMEM1-202ENST00000439068 APLP2Q06481 763 aa17.67■□□□□ 0.42
LSMEM1-202ENST00000439068 RNF39Q9H2S5 420 aa17.67■□□□□ 0.42
LSMEM1-202ENST00000439068 SPINK5Q9NQ38 1064 aaPredicted RBP17.64■□□□□ 0.41
LSMEM1-202ENST00000439068 DNAJC5Q9H3Z4 198 aa17.62■□□□□ 0.41
LSMEM1-202ENST00000439068 TRHP20396 242 aaPredicted RBP17.57■□□□□ 0.4
LSMEM1-202ENST00000439068 CAPN15O75808 1086 aa17.47■□□□□ 0.39
LSMEM1-202ENST00000439068 C1QBPQ07021 282 aaKnown RBP17.43■□□□□ 0.38
LSMEM1-202ENST00000439068 MKRN4PQ13434 485 aaPredicted RBP17.41■□□□□ 0.38
LSMEM1-202ENST00000439068 POLA2Q14181 598 aa17.39■□□□□ 0.37
LSMEM1-202ENST00000439068 RTN4Q9NQC3 1192 aaKnown RBP17.28■□□□□ 0.36
LSMEM1-202ENST00000439068 ABCB7O75027 752 aa17.27■□□□□ 0.36
LSMEM1-202ENST00000439068 CUX2O14529 1486 aa17.24■□□□□ 0.35
LSMEM1-202ENST00000439068 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
LSMEM1-202ENST00000439068 SPDYE4A6NLX3 237 aa17.22■□□□□ 0.35
LSMEM1-202ENST00000439068 FBLN2P98095 1184 aa17.22■□□□□ 0.35
LSMEM1-202ENST00000439068 NCAPD3P42695 1498 aa17.2■□□□□ 0.34
LSMEM1-202ENST00000439068 AMER1Q5JTC6 1135 aaPredicted RBP17.13■□□□□ 0.33
LSMEM1-202ENST00000439068 ATAD2BQ9ULI0 1458 aa17.08■□□□□ 0.32
LSMEM1-202ENST00000439068 DSG3P32926 999 aa17.04■□□□□ 0.32
LSMEM1-202ENST00000439068 SMARCA2P51531 1590 aa17.03■□□□□ 0.32
LSMEM1-202ENST00000439068 PROM2Q8N271 834 aa16.98■□□□□ 0.31
LSMEM1-202ENST00000439068 HMGXB3Q12766 1538 aa16.97■□□□□ 0.31
LSMEM1-202ENST00000439068 ZBTB12Q9Y330 459 aaPredicted RBP16.97■□□□□ 0.31
LSMEM1-202ENST00000439068 NESP48681 1621 aa16.93■□□□□ 0.3
LSMEM1-202ENST00000439068 SMARCA4P51532 1647 aa16.93■□□□□ 0.3
LSMEM1-202ENST00000439068 BAZ1BQ9UIG0 1483 aaKnown RBP16.93■□□□□ 0.3
LSMEM1-202ENST00000439068 FBXO3Q9UK99 471 aa16.89■□□□□ 0.29
LSMEM1-202ENST00000439068 BAZ1AQ9NRL2 1556 aaPredicted RBP16.88■□□□□ 0.29
LSMEM1-202ENST00000439068 PDS5BQ9NTI5 1447 aa16.84■□□□□ 0.29
LSMEM1-202ENST00000439068 CACNB1Q02641 598 aaPredicted RBP16.82■□□□□ 0.28
LSMEM1-202ENST00000439068 LAMC3Q9Y6N6 1575 aa16.81■□□□□ 0.28
LSMEM1-202ENST00000439068 OSCARQ8IYS5 282 aa16.78■□□□□ 0.28
LSMEM1-202ENST00000439068 PEG3Q9GZU2 1588 aa16.77■□□□□ 0.28
LSMEM1-202ENST00000439068 TRIM41Q8WV44 630 aa16.76■□□□□ 0.27
LSMEM1-202ENST00000439068 VASPP50552 380 aaPredicted RBP16.75■□□□□ 0.27
LSMEM1-202ENST00000439068 THOC2Q8NI27 1593 aaKnown RBP16.73■□□□□ 0.27
LSMEM1-202ENST00000439068 ZNF692Q9BU19 519 aaPredicted RBP16.72■□□□□ 0.27
LSMEM1-202ENST00000439068 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
LSMEM1-202ENST00000439068 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
LSMEM1-202ENST00000439068 SPDYE2BA6NHP3 402 aa16.63■□□□□ 0.25
LSMEM1-202ENST00000439068 SPDYE6P0CI01 402 aa16.63■□□□□ 0.25
LSMEM1-202ENST00000439068 SPDYE2Q495Y8 402 aa16.63■□□□□ 0.25
LSMEM1-202ENST00000439068 KIF21AQ7Z4S6 1674 aa16.62■□□□□ 0.25
LSMEM1-202ENST00000439068 IFNLR1Q8IU57 520 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms